Wall clock time and date at job start Tue Mar 31 2020 12:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38382 * 119.92849 * 2 1 4 4 C 1.38335 * 120.29357 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14475 * 359.97438 * 4 3 2 6 6 C 1.39555 * 119.84922 * 0.02655 * 5 4 3 7 7 C 1.47852 * 120.14128 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99862 * 173.80029 * 7 6 5 9 9 N 1.34775 * 119.99823 * 353.80385 * 7 6 5 10 10 C 1.46503 * 119.99705 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.64205 * 56.69247 * 11 10 9 13 13 C 1.54323 * 110.71895 * 293.54711 * 11 10 9 14 14 N 1.47026 * 107.26854 * 219.44442 * 13 11 10 15 15 C 1.36937 * 125.64657 * 178.90953 * 14 13 11 16 16 H 1.07999 * 120.00394 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99877 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46856 * 89.99718 * 19 17 15 21 21 H 1.48496 * 109.46631 * 209.99824 * 19 17 15 22 22 H 1.48497 * 109.47108 * 329.99672 * 19 17 15 23 23 C 1.47420 * 108.70422 * 358.94187 * 14 13 11 24 24 C 1.54910 * 104.83369 * 24.12995 * 23 14 13 25 25 H 1.08997 * 111.00620 * 81.06380 * 24 23 14 26 26 O 1.42900 * 111.00234 * 204.91675 * 24 23 14 27 27 C 1.37932 * 119.92762 * 180.26004 * 2 1 3 28 28 C 1.50698 * 120.07412 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47315 * 89.99466 * 1 2 3 30 30 H 1.09002 * 109.47083 * 210.00098 * 1 2 3 31 31 H 1.09007 * 109.46606 * 329.99862 * 1 2 3 32 32 H 1.08001 * 119.85420 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.92881 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.07603 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00480 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.47009 * 299.99998 * 10 9 7 37 37 H 1.09001 * 109.47297 * 60.00030 * 10 9 7 38 38 H 1.08993 * 109.88465 * 338.86040 * 13 11 10 39 39 H 1.08995 * 109.88337 * 99.87516 * 13 11 10 40 40 H 0.97001 * 119.99577 * 179.97438 * 18 17 15 41 41 H 1.09007 * 110.36812 * 142.96841 * 23 14 13 42 42 H 1.09004 * 110.37026 * 265.17944 * 23 14 13 43 43 H 0.96698 * 114.00411 * 292.19139 * 26 24 23 44 44 H 1.08999 * 109.47331 * 263.73546 * 28 27 2 45 45 H 1.09005 * 109.47114 * 23.73921 * 28 27 2 46 46 H 1.09004 * 109.47598 * 143.74132 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2813 0.0193 -0.0005 6 6 3.5911 -1.1936 -0.0006 7 6 4.3352 -2.4712 -0.0011 8 8 3.7368 -3.5231 0.1125 9 7 5.6770 -2.4695 -0.1276 10 6 6.4144 -3.7354 -0.1276 11 6 7.9101 -3.4543 -0.2846 12 1 8.2605 -2.7873 0.5031 13 6 8.2109 -2.8605 -1.6769 14 7 9.4697 -3.4595 -2.1441 15 6 10.0731 -3.2112 -3.3481 16 1 9.6210 -2.5231 -4.0470 17 6 11.2653 -3.8448 -3.6707 18 7 11.8161 -4.6838 -2.8192 19 14 12.0881 -3.5066 -5.3133 20 1 13.0228 -2.3614 -5.1722 21 1 12.8418 -4.7104 -5.7465 22 1 11.0534 -3.1790 -6.3270 23 6 9.9743 -4.3723 -1.1023 24 6 8.7198 -4.7779 -0.2889 25 1 8.1680 -5.5719 -0.7919 26 8 9.0744 -5.1658 1.0399 27 6 2.1952 -1.1954 -0.0054 28 6 1.4417 -2.5005 -0.0119 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 1.6539 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3612 0.0275 -0.0014 35 1 6.1545 -1.6301 -0.2186 36 1 6.2392 -4.2579 0.8128 37 1 6.0725 -4.3550 -0.9567 38 1 7.4043 -3.1072 -2.3672 39 1 8.3176 -1.7783 -1.6032 40 1 12.6490 -5.1268 -3.0448 41 1 10.4321 -5.2509 -1.5569 42 1 10.6929 -3.8587 -0.4635 43 1 9.5816 -5.9877 1.0877 44 1 1.3568 -2.8761 1.0078 45 1 0.4455 -2.3428 -0.4253 46 1 1.9779 -3.2266 -0.6230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958641167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:13 Heat of formation + Delta-G solvation = -37.982009 kcal Electronic energy + Delta-G solvation = -26445.892525 eV Core-core repulsion = 22721.899870 eV Total energy + Delta-G solvation = -3723.992655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53976 -38.86763 -38.03311 -35.25490 -34.79875 -33.59560 -32.42180 -32.07280 -29.82281 -28.03801 -27.36696 -26.64634 -25.58790 -24.03815 -22.79976 -21.12499 -20.69840 -20.02744 -19.67993 -17.62717 -17.05755 -16.70792 -16.21459 -15.86445 -15.51310 -15.20087 -15.01577 -14.58785 -14.40427 -13.96198 -13.82365 -13.34963 -13.19378 -13.08376 -12.98038 -12.76215 -12.58208 -12.44261 -12.11314 -11.98246 -11.96064 -11.82154 -11.53254 -11.26730 -11.09792 -10.97843 -10.83321 -10.64980 -10.08377 -9.96388 -9.75429 -9.56893 -9.18981 -9.14625 -8.86669 -8.75156 -8.73286 -6.93921 -5.73996 -3.16596 0.70459 1.12258 2.81731 3.19318 3.35623 3.40685 3.42638 3.66936 4.38731 4.49951 4.55213 4.63732 4.69356 4.79437 4.97554 4.99880 5.06094 5.22213 5.31588 5.36319 5.41447 5.43978 5.48285 5.55504 5.65033 5.69273 5.75481 5.81146 5.92432 6.01537 6.04271 6.08160 6.14215 6.17924 6.22039 6.36595 6.42044 6.49493 6.59993 6.70993 6.78761 7.33155 7.51891 7.54999 7.71893 8.13999 8.24619 8.26552 9.12216 9.73015 10.36110 11.30046 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002763 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.218722 B =10130.766424 C =11023.741233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.134 4.134 7 C 0.555 3.445 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.134 3.866 11 C -0.105 4.105 12 H 0.086 0.914 13 C 0.141 3.859 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.128 3.872 24 C 0.082 3.918 25 H 0.061 0.939 26 O -0.569 6.569 27 C -0.024 4.024 28 C -0.123 4.123 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.024 0.976 40 H 0.253 0.747 41 H 0.109 0.891 42 H 0.022 0.978 43 H 0.377 0.623 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.571 8.454 7.606 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.105 4.105 6 C -0.137 4.137 7 C 0.343 3.657 8 O -0.414 6.414 9 N -0.371 5.371 10 C 0.011 3.989 11 C -0.125 4.125 12 H 0.104 0.896 13 C 0.015 3.985 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.747 3.253 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.003 3.997 24 C 0.021 3.979 25 H 0.079 0.921 26 O -0.374 6.374 27 C -0.025 4.025 28 C -0.179 4.179 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.040 0.960 43 H 0.224 0.776 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.112 8.158 7.704 22.163 hybrid contribution 1.229 0.336 -1.003 1.622 sum -17.883 8.494 6.700 20.901 Atomic orbital electron populations 1.20826 0.90856 1.02962 1.02485 1.19769 0.96330 0.92337 1.01697 1.21210 0.94317 0.97502 0.98187 1.21057 0.94229 0.98032 1.01594 1.21332 0.99918 0.91793 0.97486 1.19832 0.93751 0.93132 1.06943 1.18239 0.82044 0.88727 0.76702 1.90713 1.67808 1.33034 1.49870 1.45988 1.06575 1.10593 1.73900 1.21442 0.90140 0.85017 1.02323 1.22410 0.92586 0.98242 0.99229 0.89594 1.21362 0.90206 0.95702 0.91237 1.44315 1.22362 1.49641 1.16483 1.19091 1.03068 1.21427 0.91679 0.90277 1.24809 0.97688 0.99404 0.98711 1.69762 1.20279 1.32218 1.34884 0.86036 0.79259 0.77227 0.82766 1.21552 1.21579 1.20611 1.22545 0.91111 0.97092 0.88979 1.23308 0.97568 0.94271 0.82736 0.92097 1.86368 1.76833 1.46345 1.27834 1.19894 0.92036 0.95723 0.94839 1.21126 0.98893 0.94291 1.03626 0.91064 0.91012 0.91523 0.85738 0.85400 0.85496 0.76457 0.91056 0.91168 0.95299 0.95829 0.93606 0.87314 0.95979 0.77616 0.90739 0.92265 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.18 36.01 0.33 -0.47 16 2 C -0.10 -0.98 5.87 -104.68 -0.61 -1.59 16 3 C -0.09 -0.82 9.69 -39.49 -0.38 -1.20 16 4 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 5 C -0.09 -0.90 9.53 -39.18 -0.37 -1.28 16 6 C -0.13 -1.68 5.87 -104.97 -0.62 -2.30 16 7 C 0.56 8.13 7.70 -12.33 -0.09 8.04 16 8 O -0.54 -9.16 13.35 5.32 0.07 -9.09 16 9 N -0.72 -9.90 5.35 -61.24 -0.33 -10.23 16 10 C 0.13 2.08 4.99 -4.04 -0.02 2.06 16 11 C -0.11 -1.82 2.75 -88.78 -0.24 -2.07 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 13 C 0.14 2.82 6.52 -3.06 -0.02 2.80 16 14 N -0.60 -15.03 3.39 -170.07 -0.58 -15.61 16 15 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.33 10.09 55.49 0.56 -25.77 16 19 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.13 3.03 5.62 -2.53 -0.01 3.02 16 24 C 0.08 1.54 3.88 -24.58 -0.10 1.44 16 25 H 0.06 1.13 8.05 -51.93 -0.42 0.71 16 26 O -0.57 -9.77 13.47 -35.23 -0.47 -10.25 16 27 C -0.02 -0.28 5.91 -104.23 -0.62 -0.90 16 28 C -0.12 -1.40 8.08 36.00 0.29 -1.11 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.48 6.58 -51.93 -0.34 0.14 16 31 H 0.07 0.37 8.08 -51.92 -0.42 -0.05 16 32 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.11 6.45 -52.49 -0.34 0.77 16 35 H 0.40 4.74 6.40 -40.82 -0.26 4.48 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 38 H 0.03 0.58 7.76 -51.93 -0.40 0.18 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.11 2.86 5.87 -51.92 -0.30 2.55 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.38 5.03 9.12 45.56 0.42 5.44 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.53 6.36 -51.93 -0.33 0.20 16 46 H 0.10 1.31 5.86 -51.93 -0.30 1.01 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -32.41 367.63 -9.40 -41.82 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.05 Total: 8.70 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.12 Total: -1.81 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.35 Total: -51.61 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.40 Total: -19.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.41 -9.40 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958641167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.837 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds