Wall clock time and date at job start Tue Mar 31 2020 12:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38382 * 119.92849 * 2 1 4 4 C 1.38335 * 120.29357 * 180.02562 * 3 2 1 5 5 C 1.37983 * 120.14475 * 359.97438 * 4 3 2 6 6 C 1.39555 * 119.84922 * 0.02655 * 5 4 3 7 7 C 1.47852 * 120.14128 * 179.97438 * 6 5 4 8 8 O 1.21554 * 119.99862 * 173.80029 * 7 6 5 9 9 N 1.34775 * 119.99823 * 353.80385 * 7 6 5 10 10 C 1.46503 * 119.99705 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.64205 * 56.69247 * 11 10 9 13 13 C 1.54323 * 110.71895 * 293.54711 * 11 10 9 14 14 N 1.47026 * 107.26854 * 219.44442 * 13 11 10 15 15 C 1.36937 * 125.64657 * 178.90953 * 14 13 11 16 16 H 1.07999 * 120.00394 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99906 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99877 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99791 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46856 * 89.99718 * 19 17 15 21 21 H 1.48496 * 109.46631 * 209.99824 * 19 17 15 22 22 H 1.48497 * 109.47108 * 329.99672 * 19 17 15 23 23 C 1.47420 * 108.70422 * 358.94187 * 14 13 11 24 24 C 1.54910 * 104.83369 * 24.12995 * 23 14 13 25 25 H 1.08997 * 111.00620 * 81.06380 * 24 23 14 26 26 O 1.42900 * 111.00234 * 204.91675 * 24 23 14 27 27 C 1.37932 * 119.92762 * 180.26004 * 2 1 3 28 28 C 1.50698 * 120.07412 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47315 * 89.99466 * 1 2 3 30 30 H 1.09002 * 109.47083 * 210.00098 * 1 2 3 31 31 H 1.09007 * 109.46606 * 329.99862 * 1 2 3 32 32 H 1.08001 * 119.85420 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.92881 * 180.02562 * 4 3 2 34 34 H 1.07998 * 120.07603 * 179.97438 * 5 4 3 35 35 H 0.96997 * 120.00480 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.47009 * 299.99998 * 10 9 7 37 37 H 1.09001 * 109.47297 * 60.00030 * 10 9 7 38 38 H 1.08993 * 109.88465 * 338.86040 * 13 11 10 39 39 H 1.08995 * 109.88337 * 99.87516 * 13 11 10 40 40 H 0.97001 * 119.99577 * 179.97438 * 18 17 15 41 41 H 1.09007 * 110.36812 * 142.96841 * 23 14 13 42 42 H 1.09004 * 110.37026 * 265.17944 * 23 14 13 43 43 H 0.96698 * 114.00411 * 292.19139 * 26 24 23 44 44 H 1.08999 * 109.47331 * 263.73546 * 28 27 2 45 45 H 1.09005 * 109.47114 * 23.73921 * 28 27 2 46 46 H 1.09004 * 109.47598 * 143.74132 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.2813 0.0193 -0.0005 6 6 3.5911 -1.1936 -0.0006 7 6 4.3352 -2.4712 -0.0011 8 8 3.7368 -3.5231 0.1125 9 7 5.6770 -2.4695 -0.1276 10 6 6.4144 -3.7354 -0.1276 11 6 7.9101 -3.4543 -0.2846 12 1 8.2605 -2.7873 0.5031 13 6 8.2109 -2.8605 -1.6769 14 7 9.4697 -3.4595 -2.1441 15 6 10.0731 -3.2112 -3.3481 16 1 9.6210 -2.5231 -4.0470 17 6 11.2653 -3.8448 -3.6707 18 7 11.8161 -4.6838 -2.8192 19 14 12.0881 -3.5066 -5.3133 20 1 13.0228 -2.3614 -5.1722 21 1 12.8418 -4.7104 -5.7465 22 1 11.0534 -3.1790 -6.3270 23 6 9.9743 -4.3723 -1.1023 24 6 8.7198 -4.7779 -0.2889 25 1 8.1680 -5.5719 -0.7919 26 8 9.0744 -5.1658 1.0399 27 6 2.1952 -1.1954 -0.0054 28 6 1.4417 -2.5005 -0.0119 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5139 32 1 1.6539 2.1326 -0.0004 33 1 4.1136 2.1475 -0.0001 34 1 5.3612 0.0275 -0.0014 35 1 6.1545 -1.6301 -0.2186 36 1 6.2392 -4.2579 0.8128 37 1 6.0725 -4.3550 -0.9567 38 1 7.4043 -3.1072 -2.3672 39 1 8.3176 -1.7783 -1.6032 40 1 12.6490 -5.1268 -3.0448 41 1 10.4321 -5.2509 -1.5569 42 1 10.6929 -3.8587 -0.4635 43 1 9.5816 -5.9877 1.0877 44 1 1.3568 -2.8761 1.0078 45 1 0.4455 -2.3428 -0.4253 46 1 1.9779 -3.2266 -0.6230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958641167.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:11 Heat of formation + Delta-G solvation = -60.112565 kcal Electronic energy + Delta-G solvation = -26446.852178 eV Core-core repulsion = 22721.899870 eV Total energy + Delta-G solvation = -3724.952307 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.51108 -40.11858 -39.30709 -36.68478 -36.26505 -34.54742 -33.84986 -33.10563 -31.42190 -29.44268 -28.55904 -27.36037 -27.21882 -25.46929 -23.96212 -22.35719 -21.92487 -21.33253 -21.00830 -19.01415 -18.62887 -18.14112 -17.26762 -17.03619 -16.61253 -16.58657 -16.10325 -15.82785 -15.70975 -15.35796 -14.96168 -14.75623 -14.31478 -14.29427 -14.04443 -13.92556 -13.66584 -13.59043 -13.37115 -13.22150 -13.11737 -12.92621 -12.76353 -12.68916 -12.53758 -12.39862 -12.32601 -11.91334 -11.87569 -11.79262 -11.38741 -10.90447 -10.75459 -10.63756 -10.22880 -9.75246 -9.52167 -8.94422 -7.81207 -5.26593 -0.12245 0.38352 1.46919 1.48257 1.57114 1.84350 2.08006 2.46655 2.83244 3.18199 3.29384 3.55904 3.64558 3.76626 3.82121 3.89845 3.92062 4.08015 4.09885 4.27981 4.38596 4.40788 4.43749 4.57690 4.64578 4.70968 4.75964 4.79911 4.85377 4.86583 4.90920 4.94484 4.98041 5.17926 5.24013 5.28435 5.37228 5.41148 5.43815 5.46835 5.50293 5.66092 5.72218 5.99351 6.23181 6.47556 6.87157 7.06072 7.14931 7.72117 8.34807 9.20762 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.002763 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.218722 B =10130.766424 C =11023.741233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.106 4.106 3 C -0.090 4.090 4 C -0.131 4.131 5 C -0.093 4.093 6 C -0.158 4.158 7 C 0.552 3.448 8 O -0.567 6.567 9 N -0.713 5.713 10 C 0.148 3.852 11 C -0.088 4.088 12 H 0.093 0.907 13 C 0.140 3.860 14 N -0.623 5.623 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.949 5.949 19 Si 0.982 3.018 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.134 3.866 24 C 0.097 3.903 25 H 0.067 0.933 26 O -0.568 6.568 27 C -0.046 4.046 28 C -0.117 4.117 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.248 0.752 41 H 0.079 0.921 42 H -0.007 1.007 43 H 0.394 0.606 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.186 10.752 7.641 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.106 4.106 3 C -0.108 4.108 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.161 4.161 7 C 0.341 3.659 8 O -0.449 6.449 9 N -0.365 5.365 10 C 0.024 3.976 11 C -0.107 4.107 12 H 0.111 0.889 13 C 0.015 3.985 14 N -0.350 5.350 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.810 3.190 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.194 1.194 23 C 0.008 3.992 24 C 0.036 3.964 25 H 0.085 0.915 26 O -0.375 6.375 27 C -0.047 4.047 28 C -0.173 4.173 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.157 0.843 35 H 0.247 0.753 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.011 0.989 43 H 0.244 0.756 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.741 10.478 7.752 24.496 hybrid contribution 1.697 -0.321 -0.981 1.986 sum -19.044 10.157 6.771 22.621 Atomic orbital electron populations 1.20888 0.88995 1.03936 1.03289 1.20098 0.97787 0.91877 1.00829 1.21633 0.94481 0.98326 0.96350 1.21430 0.94670 0.98463 1.00308 1.21539 1.00705 0.91604 0.97343 1.19798 0.94188 0.92705 1.09382 1.18663 0.82040 0.89318 0.75842 1.90698 1.68396 1.34384 1.51383 1.45866 1.06488 1.10385 1.73779 1.21147 0.88841 0.85722 1.01861 1.22237 0.93515 0.97176 0.97798 0.88909 1.21497 0.88193 0.96272 0.92528 1.44597 1.23774 1.50419 1.16255 1.19469 1.03390 1.21244 0.92756 0.89796 1.25650 0.98542 0.99625 1.02061 1.70004 1.20319 1.33112 1.36433 0.85029 0.78230 0.76666 0.79111 1.21342 1.21968 1.19362 1.22319 0.92703 0.95413 0.88771 1.22986 0.95306 0.95215 0.82877 0.91485 1.86343 1.77116 1.47686 1.26401 1.20077 0.92027 0.96573 0.95995 1.21014 0.99697 0.93868 1.02747 0.90228 0.91052 0.89616 0.82701 0.82734 0.84294 0.75258 0.91105 0.92170 0.95121 0.94530 0.94199 0.90281 0.98901 0.75617 0.91487 0.90141 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.18 71.24 0.65 -0.64 16 2 C -0.11 -1.81 5.87 -19.90 -0.12 -1.93 16 3 C -0.09 -1.26 9.69 22.33 0.22 -1.04 16 4 C -0.13 -1.95 10.03 22.23 0.22 -1.72 16 5 C -0.09 -1.78 9.53 22.53 0.21 -1.56 16 6 C -0.16 -3.87 5.87 -20.09 -0.12 -3.99 16 7 C 0.55 16.20 7.70 86.79 0.67 16.87 16 8 O -0.57 -19.92 13.35 -3.88 -0.05 -19.98 16 9 N -0.71 -19.13 5.35 -465.95 -2.49 -21.63 16 10 C 0.15 4.50 4.99 86.38 0.43 4.93 16 11 C -0.09 -2.97 2.75 -9.60 -0.03 -2.99 16 12 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.14 5.52 6.52 86.73 0.57 6.08 16 14 N -0.62 -31.47 3.39 -691.98 -2.35 -33.82 16 15 C -0.24 -13.20 10.27 84.03 0.86 -12.34 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.70 5.49 84.86 0.47 -3.23 16 18 N -0.95 -55.54 10.09 21.65 0.22 -55.32 16 19 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 20 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.13 6.48 5.62 86.86 0.49 6.97 16 24 C 0.10 3.63 3.88 31.99 0.12 3.76 16 25 H 0.07 2.46 8.05 -2.39 -0.02 2.44 16 26 O -0.57 -18.98 13.47 -148.98 -2.01 -20.99 16 27 C -0.05 -1.04 5.91 -19.61 -0.12 -1.16 16 28 C -0.12 -2.69 8.08 71.24 0.58 -2.11 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.81 6.58 -2.39 -0.02 0.79 16 31 H 0.09 0.64 8.08 -2.38 -0.02 0.62 16 32 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 34 H 0.14 2.16 6.45 -2.91 -0.02 2.15 16 35 H 0.41 9.18 6.40 -92.71 -0.59 8.59 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 38 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.08 4.32 5.87 -2.38 -0.01 4.30 16 42 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.39 10.17 9.12 -74.06 -0.68 9.49 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.40 6.36 -2.38 -0.02 1.39 16 46 H 0.07 1.98 5.86 -2.38 -0.01 1.96 16 Total: -1.00 -71.38 367.63 0.20 -71.18 By element: Atomic # 1 Polarization: 27.97 SS G_CDS: -0.26 Total: 27.71 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 5.11 Total: 5.89 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -4.62 Total: -110.77 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.06 Total: -40.97 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.38 0.20 -71.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958641167.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.069 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds