Wall clock time and date at job start Tue Mar 31 2020 12:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38385 * 119.84935 * 2 1 4 4 C 1.37940 * 120.14076 * 180.02562 * 3 2 1 5 5 C 1.39590 * 119.85467 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14667 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00079 * 186.17174 * 6 5 4 8 8 N 1.34781 * 119.99770 * 6.17771 * 6 5 4 9 9 C 1.46507 * 119.99867 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46795 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.89014 * 302.57073 * 10 9 8 12 12 C 1.54913 * 111.00669 * 66.45452 * 10 9 8 13 13 N 1.47417 * 104.83230 * 155.07906 * 12 10 9 14 14 C 1.36944 * 125.64875 * 155.83790 * 13 12 10 15 15 H 1.08004 * 119.99648 * 5.27041 * 14 13 12 16 16 C 1.38806 * 120.00282 * 185.27544 * 14 13 12 17 17 N 1.31624 * 119.99845 * 351.65446 * 16 14 13 18 18 Si 1.86797 * 120.00072 * 171.65643 * 16 14 13 19 19 H 1.48506 * 109.47038 * 94.97903 * 18 16 14 20 20 H 1.48500 * 109.47262 * 214.97415 * 18 16 14 21 21 H 1.48502 * 109.47212 * 334.97897 * 18 16 14 22 22 C 1.47020 * 108.70694 * 335.87426 * 13 12 10 23 23 C 1.54325 * 107.26970 * 1.06047 * 22 13 12 24 24 H 1.08995 * 110.72026 * 140.56011 * 23 22 13 25 25 O 1.42898 * 110.71665 * 263.82723 * 23 22 13 26 26 C 1.39557 * 119.71157 * 359.70395 * 5 4 3 27 27 C 1.50700 * 120.07749 * 180.31679 * 26 5 4 28 28 C 1.37982 * 119.85299 * 0.57118 * 26 5 4 29 29 H 1.09009 * 109.46875 * 270.02255 * 1 2 3 30 30 H 1.09003 * 109.47490 * 30.02069 * 1 2 3 31 31 H 1.08995 * 109.47298 * 150.02346 * 1 2 3 32 32 H 1.08000 * 119.93145 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.07169 * 180.02562 * 4 3 2 34 34 H 0.97002 * 120.00040 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46975 * 300.00063 * 9 8 6 36 36 H 1.09004 * 109.46848 * 59.99835 * 9 8 6 37 37 H 1.08994 * 110.36867 * 273.92201 * 12 10 9 38 38 H 1.09002 * 110.36065 * 36.13235 * 12 10 9 39 39 H 0.97006 * 119.99686 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.88398 * 120.47575 * 22 13 12 41 41 H 1.09000 * 109.88582 * 241.48590 * 22 13 12 42 42 H 0.96701 * 114.00453 * 293.52183 * 25 23 22 43 43 H 1.09006 * 109.47227 * 277.21240 * 27 26 5 44 44 H 1.08999 * 109.47064 * 37.20845 * 27 26 5 45 45 H 1.09002 * 109.47615 * 157.21329 * 27 26 5 46 46 H 1.07993 * 119.92828 * 179.72664 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2762 0.0002 -0.0016 6 6 5.7546 0.0002 -0.0028 7 8 6.3623 -1.0464 -0.1169 8 7 6.4286 1.1606 0.1228 9 6 7.8937 1.1605 0.1223 10 6 8.4037 2.5947 0.2770 11 1 8.0161 3.2328 -0.5171 12 6 8.0446 3.1643 1.6721 13 7 9.0528 4.2100 1.9236 14 6 8.8998 5.2805 2.7639 15 1 8.0129 5.3653 3.3744 16 6 9.8844 6.2566 2.8308 17 7 11.0339 6.0751 2.2158 18 14 9.5782 7.8277 3.7937 19 1 10.1266 7.6820 5.1661 20 1 10.2470 8.9647 3.1116 21 1 8.1176 8.0854 3.8691 22 6 10.2493 3.9140 1.1223 23 6 9.9543 2.6324 0.3147 24 1 10.3629 2.7089 -0.6928 25 8 10.4719 1.4818 0.9856 26 6 3.5754 -1.2067 0.0041 27 6 4.3239 -2.5146 0.0102 28 6 2.1956 -1.1998 -0.0011 29 1 -0.3633 0.0004 1.0278 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5134 32 1 1.6522 2.1335 -0.0004 33 1 4.1116 2.1447 -0.0001 34 1 5.9436 1.9958 0.2136 35 1 8.2573 0.5537 0.9515 36 1 8.2566 0.7456 -0.8181 37 1 7.0443 3.5969 1.6593 38 1 8.1095 2.3826 2.4290 39 1 11.7221 6.7571 2.2629 40 1 10.4546 4.7413 0.4429 41 1 11.1045 3.7527 1.7787 42 1 11.4372 1.4570 1.0364 43 1 4.6163 -2.7707 -1.0082 44 1 5.2148 -2.4205 0.6311 45 1 3.6821 -3.2988 0.4120 46 1 1.6521 -2.1330 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958644317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:19 Heat of formation + Delta-G solvation = -39.970332 kcal Electronic energy + Delta-G solvation = -26457.003115 eV Core-core repulsion = 22732.924240 eV Total energy + Delta-G solvation = -3724.078875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45674 -38.83976 -38.07875 -35.05051 -34.64165 -33.50315 -32.61493 -31.82122 -29.73905 -28.02092 -27.51095 -27.08134 -25.38052 -23.60257 -22.78810 -21.36537 -20.55470 -20.07078 -19.63982 -17.79353 -17.34463 -16.42744 -16.13193 -15.35266 -15.19286 -15.03257 -14.88826 -14.73958 -14.25501 -13.97766 -13.73661 -13.60104 -13.38714 -13.28205 -13.02008 -12.79335 -12.59652 -12.55361 -12.04923 -11.87937 -11.84250 -11.74726 -11.42058 -11.23979 -11.19934 -10.82757 -10.64272 -10.47076 -10.11096 -10.06218 -9.83674 -9.51696 -9.19074 -9.04615 -8.97402 -8.66846 -8.64379 -6.88686 -5.78523 -3.09808 0.70876 1.16766 2.84376 3.26903 3.36764 3.42449 3.44318 3.70244 4.44353 4.48926 4.52791 4.66820 4.69180 4.78309 5.01503 5.07766 5.12278 5.26850 5.30468 5.34535 5.40290 5.42750 5.51749 5.57348 5.58570 5.70893 5.77127 5.78654 5.89777 6.04627 6.07902 6.08428 6.13356 6.29814 6.36225 6.39014 6.43258 6.52958 6.64277 6.72167 6.88032 7.36715 7.45679 7.60956 7.72341 8.18153 8.22122 8.30968 9.15463 9.76589 10.42658 11.34090 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002908 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.691424 B = 9627.038640 C =11109.637097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.076 4.076 5 C -0.143 4.143 6 C 0.555 3.445 7 O -0.536 6.536 8 N -0.722 5.722 9 C 0.141 3.859 10 C -0.110 4.110 11 H 0.088 0.912 12 C 0.145 3.855 13 N -0.603 5.603 14 C -0.228 4.228 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.152 3.848 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.564 6.564 26 C -0.020 4.020 27 C -0.120 4.120 28 C -0.135 4.135 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.375 0.625 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.055 0.945 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -12.306 -7.492 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.095 4.095 5 C -0.146 4.146 6 C 0.342 3.658 7 O -0.415 6.415 8 N -0.373 5.373 9 C 0.018 3.982 10 C -0.130 4.130 11 H 0.106 0.894 12 C 0.019 3.981 13 N -0.329 5.329 14 C -0.356 4.356 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.027 3.973 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.369 6.369 26 C -0.021 4.021 27 C -0.176 4.176 28 C -0.153 4.153 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.222 0.778 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.311 -12.976 -7.454 22.135 hybrid contribution 0.320 1.672 0.505 1.776 sum -15.992 -11.303 -6.948 20.779 Atomic orbital electron populations 1.20856 0.90963 1.02988 1.02623 1.20115 0.96244 0.93127 0.96599 1.20959 0.93861 0.97804 1.02819 1.21333 0.94549 0.97073 0.96548 1.19846 0.93049 0.93934 1.07799 1.18227 0.86924 0.83834 0.76768 1.90715 1.70035 1.30823 1.49924 1.46059 1.08259 1.09068 1.73899 1.21192 0.77465 0.97044 1.02545 1.22681 0.95101 0.94943 1.00245 0.89357 1.21562 0.92954 0.91364 0.92217 1.44380 1.11853 1.25825 1.50839 1.19063 1.03844 0.96703 1.16002 0.90374 1.24810 0.96197 0.98824 1.00575 1.69956 1.04934 1.34247 1.47858 0.86116 0.77505 0.83188 0.79078 1.21665 1.21613 1.20598 1.21869 0.90490 0.91546 0.93431 1.23101 0.92522 0.87328 0.94715 0.92506 1.86404 1.25739 1.44076 1.80703 1.20047 0.93328 0.94954 0.93728 1.21071 1.00792 0.92056 1.03699 1.20914 0.93161 0.97795 1.03417 0.90793 0.91271 0.91366 0.85465 0.85415 0.76607 0.90086 0.91774 0.94589 0.95714 0.93731 0.92945 0.93283 0.77780 0.90703 0.88552 0.92631 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.06 -0.54 5.89 -104.53 -0.62 -1.16 16 3 C -0.14 -1.27 9.68 -39.64 -0.38 -1.65 16 4 C -0.08 -0.81 9.53 -39.19 -0.37 -1.18 16 5 C -0.14 -1.82 5.87 -104.97 -0.62 -2.43 16 6 C 0.55 8.23 7.70 -12.33 -0.09 8.13 16 7 O -0.54 -9.31 13.37 5.32 0.07 -9.24 16 8 N -0.72 -10.04 5.36 -61.25 -0.33 -10.37 16 9 C 0.14 2.21 4.74 -4.04 -0.02 2.19 16 10 C -0.11 -1.87 3.03 -88.47 -0.27 -2.13 16 11 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.15 2.96 6.40 -2.53 -0.02 2.94 16 13 N -0.60 -15.14 3.39 -170.08 -0.58 -15.71 16 14 C -0.23 -6.29 10.26 -15.06 -0.15 -6.44 16 15 H 0.08 2.08 7.84 -52.48 -0.41 1.67 16 16 C -0.01 -0.22 5.47 -17.43 -0.10 -0.32 16 17 N -0.92 -26.62 10.37 55.49 0.58 -26.04 16 18 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 C 0.15 3.55 5.15 -3.06 -0.02 3.54 16 23 C 0.08 1.51 4.09 -24.90 -0.10 1.41 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 O -0.56 -9.83 12.09 -35.23 -0.43 -10.25 16 26 C -0.02 -0.23 5.91 -104.22 -0.62 -0.85 16 27 C -0.12 -1.38 8.70 36.01 0.31 -1.06 16 28 C -0.13 -1.31 9.31 -39.64 -0.37 -1.68 16 29 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.13 1.14 6.45 -52.48 -0.34 0.80 16 34 H 0.40 4.79 6.41 -40.82 -0.26 4.52 16 35 H 0.08 1.46 7.42 -51.93 -0.39 1.07 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.03 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.05 1.34 7.33 -51.93 -0.38 0.96 16 41 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 42 H 0.38 5.16 9.12 45.56 0.42 5.57 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.32 5.91 -51.93 -0.31 1.02 16 45 H 0.05 0.51 8.04 -51.93 -0.42 0.09 16 46 H 0.13 0.96 8.05 -52.49 -0.42 0.54 16 LS Contribution 370.68 15.07 5.59 5.59 Total: -1.00 -33.02 370.68 -9.44 -42.46 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.25 Total: 7.83 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -3.07 Total: -1.06 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.33 Total: -52.12 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.36 Total: -19.49 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.02 -9.44 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958644317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.489 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds