Wall clock time and date at job start Tue Mar 31 2020 12:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38385 * 119.84935 * 2 1 4 4 C 1.37940 * 120.14076 * 180.02562 * 3 2 1 5 5 C 1.39590 * 119.85467 * 0.02562 * 4 3 2 6 6 C 1.47844 * 120.14667 * 179.97438 * 5 4 3 7 7 O 1.21552 * 120.00079 * 186.17174 * 6 5 4 8 8 N 1.34781 * 119.99770 * 6.17771 * 6 5 4 9 9 C 1.46507 * 119.99867 * 179.97438 * 8 6 5 10 10 C 1.52995 * 109.46795 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.89014 * 302.57073 * 10 9 8 12 12 C 1.54913 * 111.00669 * 66.45452 * 10 9 8 13 13 N 1.47417 * 104.83230 * 155.07906 * 12 10 9 14 14 C 1.36944 * 125.64875 * 155.83790 * 13 12 10 15 15 H 1.08004 * 119.99648 * 5.27041 * 14 13 12 16 16 C 1.38806 * 120.00282 * 185.27544 * 14 13 12 17 17 N 1.31624 * 119.99845 * 351.65446 * 16 14 13 18 18 Si 1.86797 * 120.00072 * 171.65643 * 16 14 13 19 19 H 1.48506 * 109.47038 * 94.97903 * 18 16 14 20 20 H 1.48500 * 109.47262 * 214.97415 * 18 16 14 21 21 H 1.48502 * 109.47212 * 334.97897 * 18 16 14 22 22 C 1.47020 * 108.70694 * 335.87426 * 13 12 10 23 23 C 1.54325 * 107.26970 * 1.06047 * 22 13 12 24 24 H 1.08995 * 110.72026 * 140.56011 * 23 22 13 25 25 O 1.42898 * 110.71665 * 263.82723 * 23 22 13 26 26 C 1.39557 * 119.71157 * 359.70395 * 5 4 3 27 27 C 1.50700 * 120.07749 * 180.31679 * 26 5 4 28 28 C 1.37982 * 119.85299 * 0.57118 * 26 5 4 29 29 H 1.09009 * 109.46875 * 270.02255 * 1 2 3 30 30 H 1.09003 * 109.47490 * 30.02069 * 1 2 3 31 31 H 1.08995 * 109.47298 * 150.02346 * 1 2 3 32 32 H 1.08000 * 119.93145 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.07169 * 180.02562 * 4 3 2 34 34 H 0.97002 * 120.00040 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46975 * 300.00063 * 9 8 6 36 36 H 1.09004 * 109.46848 * 59.99835 * 9 8 6 37 37 H 1.08994 * 110.36867 * 273.92201 * 12 10 9 38 38 H 1.09002 * 110.36065 * 36.13235 * 12 10 9 39 39 H 0.97006 * 119.99686 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.88398 * 120.47575 * 22 13 12 41 41 H 1.09000 * 109.88582 * 241.48590 * 22 13 12 42 42 H 0.96701 * 114.00453 * 293.52183 * 25 23 22 43 43 H 1.09006 * 109.47227 * 277.21240 * 27 26 5 44 44 H 1.08999 * 109.47064 * 37.20845 * 27 26 5 45 45 H 1.09002 * 109.47615 * 157.21329 * 27 26 5 46 46 H 1.07993 * 119.92828 * 179.72664 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5752 1.2073 -0.0005 5 6 4.2762 0.0002 -0.0016 6 6 5.7546 0.0002 -0.0028 7 8 6.3623 -1.0464 -0.1169 8 7 6.4286 1.1606 0.1228 9 6 7.8937 1.1605 0.1223 10 6 8.4037 2.5947 0.2770 11 1 8.0161 3.2328 -0.5171 12 6 8.0446 3.1643 1.6721 13 7 9.0528 4.2100 1.9236 14 6 8.8998 5.2805 2.7639 15 1 8.0129 5.3653 3.3744 16 6 9.8844 6.2566 2.8308 17 7 11.0339 6.0751 2.2158 18 14 9.5782 7.8277 3.7937 19 1 10.1266 7.6820 5.1661 20 1 10.2470 8.9647 3.1116 21 1 8.1176 8.0854 3.8691 22 6 10.2493 3.9140 1.1223 23 6 9.9543 2.6324 0.3147 24 1 10.3629 2.7089 -0.6928 25 8 10.4719 1.4818 0.9856 26 6 3.5754 -1.2067 0.0041 27 6 4.3239 -2.5146 0.0102 28 6 2.1956 -1.1998 -0.0011 29 1 -0.3633 0.0004 1.0278 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3633 -0.8901 -0.5134 32 1 1.6522 2.1335 -0.0004 33 1 4.1116 2.1447 -0.0001 34 1 5.9436 1.9958 0.2136 35 1 8.2573 0.5537 0.9515 36 1 8.2566 0.7456 -0.8181 37 1 7.0443 3.5969 1.6593 38 1 8.1095 2.3826 2.4290 39 1 11.7221 6.7571 2.2629 40 1 10.4546 4.7413 0.4429 41 1 11.1045 3.7527 1.7787 42 1 11.4372 1.4570 1.0364 43 1 4.6163 -2.7707 -1.0082 44 1 5.2148 -2.4205 0.6311 45 1 3.6821 -3.2988 0.4120 46 1 1.6521 -2.1330 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958644317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:17 Heat of formation + Delta-G solvation = -62.598916 kcal Electronic energy + Delta-G solvation = -26457.984364 eV Core-core repulsion = 22732.924240 eV Total energy + Delta-G solvation = -3725.060124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44896 -40.12370 -39.30026 -36.43606 -36.20511 -34.27292 -34.08958 -33.03206 -31.31470 -29.54594 -28.39426 -28.05195 -27.05858 -25.14960 -23.61821 -22.49608 -21.96989 -21.43430 -20.89716 -19.15966 -18.81600 -18.00524 -17.18669 -16.82832 -16.49666 -16.00238 -15.92171 -15.84646 -15.74964 -15.34253 -15.13962 -14.66372 -14.41752 -14.38590 -14.19940 -14.06523 -13.88670 -13.53511 -13.26476 -13.18270 -13.04859 -12.76833 -12.68482 -12.61124 -12.49373 -12.33836 -12.08029 -11.95440 -11.90114 -11.77717 -11.57536 -10.78798 -10.71998 -10.64394 -10.14447 -9.77857 -9.53545 -8.92145 -7.88582 -5.22159 -0.13000 0.40553 1.46299 1.47022 1.56873 1.85630 2.14884 2.48247 2.83729 3.24822 3.35877 3.54792 3.68700 3.80333 3.89716 3.90386 3.94315 3.99214 4.01846 4.37580 4.39786 4.42465 4.57234 4.62248 4.65841 4.74664 4.81008 4.82167 4.82556 4.88627 4.90819 4.98615 5.05023 5.19233 5.27261 5.32837 5.34419 5.42453 5.44454 5.51888 5.60460 5.60951 5.68757 5.98462 6.16441 6.52036 6.92446 7.07758 7.19826 7.74503 8.39509 9.22438 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.002908 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.691424 B = 9627.038640 C =11109.637097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.080 4.080 5 C -0.169 4.169 6 C 0.552 3.448 7 O -0.569 6.569 8 N -0.715 5.715 9 C 0.157 3.843 10 C -0.093 4.093 11 H 0.108 0.892 12 C 0.144 3.856 13 N -0.624 5.624 14 C -0.243 4.243 15 H 0.082 0.918 16 C -0.064 4.064 17 N -0.950 5.950 18 Si 0.977 3.023 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.266 1.266 22 C 0.159 3.841 23 C 0.096 3.904 24 H 0.088 0.912 25 O -0.571 6.571 26 C -0.037 4.037 27 C -0.115 4.115 28 C -0.138 4.138 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.141 0.859 34 H 0.409 0.591 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.010 0.990 39 H 0.247 0.753 40 H 0.025 0.975 41 H 0.013 0.987 42 H 0.391 0.609 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.173 -12.168 -8.115 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.172 4.172 6 C 0.341 3.659 7 O -0.450 6.450 8 N -0.367 5.367 9 C 0.033 3.967 10 C -0.112 4.112 11 H 0.126 0.874 12 C 0.019 3.981 13 N -0.350 5.350 14 C -0.372 4.372 15 H 0.100 0.900 16 C -0.257 4.257 17 N -0.599 5.599 18 Si 0.805 3.195 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.191 1.191 22 C 0.033 3.967 23 C 0.035 3.965 24 H 0.106 0.894 25 O -0.379 6.379 26 C -0.038 4.038 27 C -0.171 4.171 28 C -0.156 4.156 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.169 0.831 33 H 0.158 0.842 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.031 0.969 42 H 0.240 0.760 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.244 -12.846 -8.077 24.507 hybrid contribution 1.161 1.579 0.746 2.097 sum -18.083 -11.267 -7.331 22.532 Atomic orbital electron populations 1.20930 0.88627 1.04213 1.03551 1.20532 0.97958 0.92638 0.94596 1.21310 0.93415 0.99126 1.01927 1.21525 0.95383 0.96765 0.96181 1.19796 0.91636 0.95322 1.10411 1.18647 0.88021 0.83329 0.75892 1.90700 1.70940 1.31905 1.51488 1.45935 1.07479 1.09561 1.73753 1.20872 0.78554 0.95491 1.01806 1.22574 0.94277 0.95768 0.98616 0.87385 1.21654 0.92751 0.89972 0.93766 1.44704 1.13518 1.26207 1.50588 1.19449 1.03848 0.97594 1.16342 0.90020 1.25639 0.96091 1.01840 1.02138 1.70164 1.05563 1.34794 1.49338 0.85087 0.77953 0.79115 0.77326 1.21774 1.21886 1.19060 1.21699 0.89110 0.93297 0.92573 1.22951 0.93563 0.84934 0.95004 0.89444 1.86387 1.27425 1.43245 1.80799 1.20221 0.94445 0.94609 0.94561 1.20967 1.00181 0.93090 1.02862 1.21174 0.92298 0.99281 1.02822 0.89825 0.90075 0.90226 0.83060 0.84157 0.75387 0.92521 0.91160 0.92997 0.97265 0.94328 0.95715 0.96925 0.75976 0.91339 0.91288 0.90378 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.01 71.24 0.71 -0.27 16 2 C -0.06 -0.85 5.89 -19.81 -0.12 -0.97 16 3 C -0.14 -2.21 9.68 22.23 0.22 -2.00 16 4 C -0.08 -1.55 9.53 22.53 0.21 -1.34 16 5 C -0.17 -4.18 5.87 -20.09 -0.12 -4.29 16 6 C 0.55 16.38 7.70 86.79 0.67 17.04 16 7 O -0.57 -20.28 13.37 -3.88 -0.05 -20.33 16 8 N -0.72 -19.35 5.36 -465.96 -2.50 -21.85 16 9 C 0.16 4.79 4.74 86.38 0.41 5.20 16 10 C -0.09 -3.04 3.03 -9.40 -0.03 -3.06 16 11 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 12 C 0.14 5.80 6.40 86.86 0.56 6.35 16 13 N -0.62 -31.68 3.39 -692.00 -2.35 -34.03 16 14 C -0.24 -13.54 10.26 84.03 0.86 -12.67 16 15 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 16 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 17 N -0.95 -56.24 10.37 21.65 0.22 -56.01 16 18 Si 0.98 45.16 29.56 68.60 2.03 47.19 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.16 7.59 5.15 86.73 0.45 8.03 16 23 C 0.10 3.40 4.09 31.78 0.13 3.53 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 O -0.57 -19.66 12.09 -148.98 -1.80 -21.46 16 26 C -0.04 -0.86 5.91 -19.61 -0.12 -0.97 16 27 C -0.11 -2.64 8.70 71.24 0.62 -2.02 16 28 C -0.14 -2.38 9.31 22.23 0.21 -2.18 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.14 2.23 6.45 -2.91 -0.02 2.21 16 34 H 0.41 9.22 6.41 -92.71 -0.59 8.62 16 35 H 0.06 2.04 7.42 -2.39 -0.02 2.02 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.01 0.41 8.00 -2.39 -0.02 0.40 16 39 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 40 H 0.02 1.30 7.33 -2.39 -0.02 1.29 16 41 H 0.01 0.68 7.51 -2.39 -0.02 0.67 16 42 H 0.39 10.60 9.12 -74.06 -0.68 9.93 16 43 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.07 1.98 5.91 -2.39 -0.01 1.97 16 45 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 46 H 0.15 1.82 8.05 -2.91 -0.02 1.80 16 Total: -1.00 -73.45 370.68 0.41 -73.04 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.27 Total: 26.21 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.13 Total: 7.24 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.62 Total: -111.89 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.85 Total: -41.79 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -73.45 0.41 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958644317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.442 kcal (2) G-P(sol) polarization free energy of solvation -73.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds