Wall clock time and date at job start Tue Mar 31 2020 12:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38384 * 119.85366 * 2 1 4 4 C 1.37932 * 120.14380 * 179.72480 * 3 2 1 5 5 C 1.39589 * 119.85336 * 0.53052 * 4 3 2 6 6 C 1.47850 * 120.14219 * 179.74966 * 5 4 3 7 7 O 1.21555 * 119.99719 * 173.74344 * 6 5 4 8 8 N 1.34777 * 120.00253 * 353.74195 * 6 5 4 9 9 C 1.46497 * 120.00047 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46992 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.63941 * 51.85479 * 10 9 8 12 12 C 1.54318 * 110.71697 * 288.51848 * 10 9 8 13 13 N 1.47029 * 107.26912 * 219.44458 * 12 10 9 14 14 C 1.36938 * 125.64559 * 178.98727 * 13 12 10 15 15 H 1.07997 * 119.99892 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99420 * 179.97438 * 14 13 12 17 17 N 1.31610 * 120.00408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99831 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47183 * 89.99791 * 18 16 14 20 20 H 1.48498 * 109.47424 * 210.00357 * 18 16 14 21 21 H 1.48506 * 109.46911 * 329.99739 * 18 16 14 22 22 C 1.47428 * 108.70179 * 358.94070 * 13 12 10 23 23 C 1.54907 * 104.83082 * 24.12851 * 22 13 12 24 24 H 1.09003 * 111.03552 * 204.90106 * 23 22 13 25 25 O 1.42903 * 111.00456 * 81.06691 * 23 22 13 26 26 C 1.39555 * 119.71228 * 359.47071 * 5 4 3 27 27 C 1.50708 * 120.07184 * 180.23174 * 26 5 4 28 28 C 1.37974 * 119.85382 * 0.25366 * 26 5 4 29 29 H 1.09003 * 109.47302 * 270.01517 * 1 2 3 30 30 H 1.09001 * 109.47648 * 30.01911 * 1 2 3 31 31 H 1.09008 * 109.47315 * 150.02500 * 1 2 3 32 32 H 1.07998 * 119.92388 * 359.97438 * 3 2 1 33 33 H 1.08008 * 120.07123 * 180.27558 * 4 3 2 34 34 H 0.97003 * 119.99561 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47488 * 59.99452 * 9 8 6 36 36 H 1.08998 * 109.46661 * 299.99505 * 9 8 6 37 37 H 1.09004 * 109.88690 * 338.86069 * 12 10 9 38 38 H 1.09003 * 109.88409 * 100.02827 * 12 10 9 39 39 H 0.97005 * 120.00385 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.36570 * 265.29014 * 22 13 12 41 41 H 1.08999 * 110.36322 * 142.96831 * 22 13 12 42 42 H 0.96701 * 113.99859 * 67.80162 * 25 23 22 43 43 H 1.09000 * 109.46827 * 83.41277 * 27 26 5 44 44 H 1.08998 * 109.46598 * 203.40915 * 27 26 5 45 45 H 1.08994 * 109.47146 * 323.40860 * 27 26 5 46 46 H 1.07993 * 119.93007 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2072 0.0057 5 6 4.2761 0.0001 0.0003 6 6 5.7546 0.0002 0.0008 7 8 6.3623 -1.0468 0.1109 8 7 6.4285 1.1610 -0.1207 9 6 7.8935 1.1610 -0.1208 10 6 8.4035 2.5956 -0.2717 11 1 7.9376 3.2486 0.4663 12 6 8.1532 3.1163 -1.7026 13 7 9.3328 3.9021 -2.0937 14 6 9.5149 4.5207 -3.3018 15 1 8.7527 4.4521 -4.0639 16 6 10.6791 5.2358 -3.5467 17 7 11.6081 5.3189 -2.6182 18 14 10.9273 6.0803 -5.1944 19 1 10.3874 7.4621 -5.1287 20 1 12.3771 6.1298 -5.5119 21 1 10.2147 5.3201 -6.2525 22 6 10.2864 3.9146 -0.9695 23 6 9.9495 2.6443 -0.1496 24 1 10.2559 2.7571 0.8904 25 8 10.5462 1.4845 -0.7335 26 6 3.5753 -1.2067 0.0003 27 6 4.3240 -2.5147 -0.0002 28 6 2.1956 -1.1998 0.0004 29 1 -0.3634 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8903 -0.5135 32 1 1.6522 2.1334 -0.0004 33 1 4.1115 2.1446 0.0102 34 1 5.9435 1.9964 -0.2090 35 1 8.2568 0.5572 -0.9523 36 1 8.2568 0.7427 0.8179 37 1 8.0242 2.2766 -2.3855 38 1 7.2653 3.7484 -1.7171 39 1 12.4216 5.8189 -2.7892 40 1 10.1439 4.8077 -0.3611 41 1 11.3103 3.8665 -1.3401 42 1 11.5117 1.4703 -0.6811 43 1 4.6072 -2.7716 1.0205 44 1 3.6858 -3.2984 -0.4084 45 1 5.2203 -2.4201 -0.6131 46 1 1.6521 -2.1330 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958644318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:21 Heat of formation + Delta-G solvation = -37.455227 kcal Electronic energy + Delta-G solvation = -26459.333736 eV Core-core repulsion = 22735.363924 eV Total energy + Delta-G solvation = -3723.969812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46585 -38.83220 -38.04953 -35.01709 -34.56050 -33.51070 -32.64464 -31.83713 -29.72944 -28.02995 -27.50666 -27.07771 -25.35981 -23.58887 -22.79702 -21.35802 -20.58742 -20.07785 -19.55727 -17.77042 -17.30236 -16.41328 -16.12717 -15.35962 -15.20593 -15.04100 -14.85023 -14.78752 -14.34806 -14.01911 -13.79655 -13.57183 -13.37480 -13.24720 -12.93919 -12.76693 -12.61520 -12.33131 -12.06305 -11.88805 -11.86206 -11.77949 -11.35956 -11.25609 -11.21081 -10.82017 -10.64729 -10.36619 -10.16244 -9.99716 -9.83478 -9.51008 -9.10761 -9.05247 -8.98366 -8.69720 -8.66807 -6.84845 -5.69479 -3.09439 0.69814 1.15558 2.83660 3.26320 3.38421 3.43710 3.45659 3.69462 4.45693 4.48102 4.51360 4.65646 4.71647 4.78591 5.00689 5.07389 5.15894 5.25233 5.31753 5.33798 5.39483 5.40925 5.51140 5.56787 5.62178 5.69985 5.76903 5.77909 5.90921 6.05234 6.08048 6.11837 6.12967 6.28543 6.34258 6.42456 6.45156 6.55486 6.67679 6.71234 6.85716 7.27709 7.57254 7.60061 7.74912 8.23315 8.30237 8.37581 9.18207 9.79616 10.43602 11.35457 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002750 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.977897 B =10178.042832 C =11118.789332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.077 4.077 5 C -0.143 4.143 6 C 0.554 3.446 7 O -0.535 6.535 8 N -0.722 5.722 9 C 0.141 3.859 10 C -0.106 4.106 11 H 0.085 0.915 12 C 0.145 3.855 13 N -0.598 5.598 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.126 3.874 23 C 0.082 3.918 24 H 0.054 0.946 25 O -0.557 6.557 26 C -0.019 4.019 27 C -0.122 4.122 28 C -0.135 4.135 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.398 0.602 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.019 0.981 41 H 0.112 0.888 42 H 0.375 0.625 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -9.935 9.002 22.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.061 4.061 3 C -0.155 4.155 4 C -0.096 4.096 5 C -0.146 4.146 6 C 0.342 3.658 7 O -0.414 6.414 8 N -0.374 5.374 9 C 0.019 3.981 10 C -0.126 4.126 11 H 0.103 0.897 12 C 0.019 3.981 13 N -0.323 5.323 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.208 4.208 17 N -0.575 5.575 18 Si 0.746 3.254 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.207 1.207 22 C 0.001 3.999 23 C 0.021 3.979 24 H 0.072 0.928 25 O -0.362 6.362 26 C -0.020 4.020 27 C -0.178 4.178 28 C -0.153 4.153 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.233 0.767 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.130 0.870 42 H 0.222 0.778 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.834 -10.691 8.829 22.589 hybrid contribution 0.418 1.324 -0.709 1.560 sum -17.416 -9.366 8.119 21.376 Atomic orbital electron populations 1.20854 0.90959 1.03066 1.02549 1.20114 0.96244 0.93126 0.96614 1.20949 0.93847 0.97791 1.02868 1.21319 0.94538 0.97042 0.96654 1.19850 0.93056 0.93940 1.07752 1.18232 0.86921 0.83856 0.76780 1.90716 1.70021 1.30772 1.49863 1.46079 1.08303 1.08974 1.74009 1.21250 0.77276 0.96956 1.02668 1.22510 0.95654 0.95145 0.99272 0.89668 1.21320 0.90998 0.94063 0.91743 1.44349 1.15602 1.59366 1.13028 1.19088 1.01771 1.23862 0.89904 0.90486 1.24760 0.96776 1.00887 0.98337 1.69742 1.09029 1.46270 1.32481 0.86051 0.77077 0.79306 0.82959 1.21672 1.21641 1.20677 1.22588 0.98717 0.90908 0.87688 1.23203 0.91311 0.88175 0.95161 0.92792 1.86398 1.24397 1.42189 1.83261 1.20052 0.93328 0.94973 0.93669 1.21093 1.00936 0.92047 1.03687 1.20918 0.93166 0.97807 1.03369 0.90858 0.91240 0.91331 0.85489 0.85464 0.76714 0.90147 0.91649 0.95344 0.96380 0.93747 0.96339 0.87046 0.77826 0.90711 0.92609 0.88417 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.00 36.00 0.36 -0.34 16 2 C -0.06 -0.54 5.89 -104.53 -0.62 -1.15 16 3 C -0.14 -1.24 9.68 -39.64 -0.38 -1.63 16 4 C -0.08 -0.80 9.52 -39.19 -0.37 -1.17 16 5 C -0.14 -1.81 5.87 -104.97 -0.62 -2.43 16 6 C 0.55 8.27 7.70 -12.33 -0.09 8.17 16 7 O -0.53 -9.41 13.34 5.32 0.07 -9.34 16 8 N -0.72 -10.06 5.42 -61.25 -0.33 -10.39 16 9 C 0.14 2.27 4.50 -4.04 -0.02 2.25 16 10 C -0.11 -1.81 2.89 -88.79 -0.26 -2.07 16 11 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.14 3.00 6.75 -3.06 -0.02 2.98 16 13 N -0.60 -15.18 3.40 -170.07 -0.58 -15.76 16 14 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 17 N -0.93 -26.58 10.09 55.49 0.56 -26.02 16 18 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.13 2.96 5.62 -2.53 -0.01 2.94 16 23 C 0.08 1.51 4.17 -24.59 -0.10 1.41 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 O -0.56 -10.35 12.33 -35.23 -0.43 -10.79 16 26 C -0.02 -0.23 5.91 -104.22 -0.62 -0.84 16 27 C -0.12 -1.41 8.73 36.01 0.31 -1.09 16 28 C -0.13 -1.31 9.31 -39.64 -0.37 -1.68 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.08 -51.92 -0.42 -0.07 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.09 6.46 -52.48 -0.34 0.76 16 34 H 0.40 4.67 6.54 -40.82 -0.27 4.40 16 35 H 0.08 1.51 7.51 -51.93 -0.39 1.12 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.03 0.63 7.68 -51.93 -0.40 0.23 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 2.92 5.87 -51.93 -0.31 2.62 16 42 H 0.37 5.69 9.12 45.56 0.42 6.10 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.51 8.04 -51.93 -0.42 0.10 16 45 H 0.10 1.37 5.85 -51.93 -0.30 1.06 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -33.11 370.27 -9.41 -42.52 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -6.20 Total: 8.48 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.06 Total: -1.33 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.35 Total: -52.17 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.36 Total: -20.12 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.11 -9.41 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958644318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.065 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds