Wall clock time and date at job start Tue Mar 31 2020 12:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38384 * 119.85366 * 2 1 4 4 C 1.37932 * 120.14380 * 179.72480 * 3 2 1 5 5 C 1.39589 * 119.85336 * 0.53052 * 4 3 2 6 6 C 1.47850 * 120.14219 * 179.74966 * 5 4 3 7 7 O 1.21555 * 119.99719 * 173.74344 * 6 5 4 8 8 N 1.34777 * 120.00253 * 353.74195 * 6 5 4 9 9 C 1.46497 * 120.00047 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.46992 * 179.97438 * 9 8 6 11 11 H 1.09001 * 110.63941 * 51.85479 * 10 9 8 12 12 C 1.54318 * 110.71697 * 288.51848 * 10 9 8 13 13 N 1.47029 * 107.26912 * 219.44458 * 12 10 9 14 14 C 1.36938 * 125.64559 * 178.98727 * 13 12 10 15 15 H 1.07997 * 119.99892 * 359.97438 * 14 13 12 16 16 C 1.38813 * 119.99420 * 179.97438 * 14 13 12 17 17 N 1.31610 * 120.00408 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99831 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47183 * 89.99791 * 18 16 14 20 20 H 1.48498 * 109.47424 * 210.00357 * 18 16 14 21 21 H 1.48506 * 109.46911 * 329.99739 * 18 16 14 22 22 C 1.47428 * 108.70179 * 358.94070 * 13 12 10 23 23 C 1.54907 * 104.83082 * 24.12851 * 22 13 12 24 24 H 1.09003 * 111.03552 * 204.90106 * 23 22 13 25 25 O 1.42903 * 111.00456 * 81.06691 * 23 22 13 26 26 C 1.39555 * 119.71228 * 359.47071 * 5 4 3 27 27 C 1.50708 * 120.07184 * 180.23174 * 26 5 4 28 28 C 1.37974 * 119.85382 * 0.25366 * 26 5 4 29 29 H 1.09003 * 109.47302 * 270.01517 * 1 2 3 30 30 H 1.09001 * 109.47648 * 30.01911 * 1 2 3 31 31 H 1.09008 * 109.47315 * 150.02500 * 1 2 3 32 32 H 1.07998 * 119.92388 * 359.97438 * 3 2 1 33 33 H 1.08008 * 120.07123 * 180.27558 * 4 3 2 34 34 H 0.97003 * 119.99561 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.47488 * 59.99452 * 9 8 6 36 36 H 1.08998 * 109.46661 * 299.99505 * 9 8 6 37 37 H 1.09004 * 109.88690 * 338.86069 * 12 10 9 38 38 H 1.09003 * 109.88409 * 100.02827 * 12 10 9 39 39 H 0.97005 * 120.00385 * 180.02562 * 17 16 14 40 40 H 1.08998 * 110.36570 * 265.29014 * 22 13 12 41 41 H 1.08999 * 110.36322 * 142.96831 * 22 13 12 42 42 H 0.96701 * 113.99859 * 67.80162 * 25 23 22 43 43 H 1.09000 * 109.46827 * 83.41277 * 27 26 5 44 44 H 1.08998 * 109.46598 * 203.40915 * 27 26 5 45 45 H 1.08994 * 109.47146 * 323.40860 * 27 26 5 46 46 H 1.07993 * 119.93007 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5751 1.2072 0.0057 5 6 4.2761 0.0001 0.0003 6 6 5.7546 0.0002 0.0008 7 8 6.3623 -1.0468 0.1109 8 7 6.4285 1.1610 -0.1207 9 6 7.8935 1.1610 -0.1208 10 6 8.4035 2.5956 -0.2717 11 1 7.9376 3.2486 0.4663 12 6 8.1532 3.1163 -1.7026 13 7 9.3328 3.9021 -2.0937 14 6 9.5149 4.5207 -3.3018 15 1 8.7527 4.4521 -4.0639 16 6 10.6791 5.2358 -3.5467 17 7 11.6081 5.3189 -2.6182 18 14 10.9273 6.0803 -5.1944 19 1 10.3874 7.4621 -5.1287 20 1 12.3771 6.1298 -5.5119 21 1 10.2147 5.3201 -6.2525 22 6 10.2864 3.9146 -0.9695 23 6 9.9495 2.6443 -0.1496 24 1 10.2559 2.7571 0.8904 25 8 10.5462 1.4845 -0.7335 26 6 3.5753 -1.2067 0.0003 27 6 4.3240 -2.5147 -0.0002 28 6 2.1956 -1.1998 0.0004 29 1 -0.3634 0.0003 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8903 -0.5135 32 1 1.6522 2.1334 -0.0004 33 1 4.1115 2.1446 0.0102 34 1 5.9435 1.9964 -0.2090 35 1 8.2568 0.5572 -0.9523 36 1 8.2568 0.7427 0.8179 37 1 8.0242 2.2766 -2.3855 38 1 7.2653 3.7484 -1.7171 39 1 12.4216 5.8189 -2.7892 40 1 10.1439 4.8077 -0.3611 41 1 11.3103 3.8665 -1.3401 42 1 11.5117 1.4703 -0.6811 43 1 4.6072 -2.7716 1.0205 44 1 3.6858 -3.2984 -0.4084 45 1 5.2203 -2.4201 -0.6131 46 1 1.6521 -2.1330 0.0000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958644318.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:20 Heat of formation + Delta-G solvation = -60.253637 kcal Electronic energy + Delta-G solvation = -26460.322349 eV Core-core repulsion = 22735.363924 eV Total energy + Delta-G solvation = -3724.958425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.45961 -40.10293 -39.29774 -36.35715 -36.21877 -34.27957 -34.13049 -33.03108 -31.32229 -29.53859 -28.38929 -28.05894 -27.05102 -25.13801 -23.62140 -22.48843 -21.99202 -21.42169 -20.85149 -19.16269 -18.78980 -17.98726 -17.20078 -16.84482 -16.51275 -16.04347 -15.93330 -15.86691 -15.81514 -15.51287 -14.97570 -14.65532 -14.42001 -14.29334 -14.08461 -14.02268 -13.82846 -13.65144 -13.28768 -13.18016 -13.02393 -12.77793 -12.65720 -12.59822 -12.50879 -12.32922 -12.05464 -11.92680 -11.86969 -11.83509 -11.59788 -10.82356 -10.69313 -10.62723 -10.16421 -9.78376 -9.54245 -8.86476 -7.79446 -5.21775 -0.13664 0.40114 1.45680 1.47168 1.55826 1.84650 2.14048 2.48343 2.83193 3.27270 3.34989 3.59795 3.68762 3.80069 3.88867 3.89535 3.95630 3.99359 4.02117 4.37063 4.39850 4.43189 4.59312 4.63942 4.65096 4.74077 4.78997 4.82307 4.83681 4.88190 4.91438 4.99859 5.04685 5.18846 5.26569 5.31525 5.33331 5.39097 5.44696 5.50765 5.60003 5.60705 5.76997 5.97990 6.28384 6.51445 6.96151 7.10601 7.19353 7.77270 8.40096 9.22732 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018049 B = 0.002750 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.977897 B =10178.042832 C =11118.789332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.139 4.139 4 C -0.079 4.079 5 C -0.169 4.169 6 C 0.551 3.449 7 O -0.570 6.570 8 N -0.715 5.715 9 C 0.158 3.842 10 C -0.091 4.091 11 H 0.115 0.885 12 C 0.143 3.857 13 N -0.621 5.621 14 C -0.237 4.237 15 H 0.076 0.924 16 C -0.065 4.065 17 N -0.948 5.948 18 Si 0.978 3.022 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.274 1.274 22 C 0.127 3.873 23 C 0.093 3.907 24 H 0.090 0.910 25 O -0.570 6.570 26 C -0.038 4.038 27 C -0.116 4.116 28 C -0.138 4.138 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.410 0.590 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.011 0.989 38 H 0.032 0.968 39 H 0.247 0.753 40 H 0.003 0.997 41 H 0.080 0.920 42 H 0.388 0.612 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 -9.652 9.614 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.172 4.172 6 C 0.340 3.660 7 O -0.451 6.451 8 N -0.367 5.367 9 C 0.034 3.966 10 C -0.110 4.110 11 H 0.133 0.867 12 C 0.018 3.982 13 N -0.346 5.346 14 C -0.366 4.366 15 H 0.094 0.906 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.807 3.193 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.002 3.998 23 C 0.032 3.968 24 H 0.108 0.892 25 O -0.377 6.377 26 C -0.039 4.039 27 C -0.173 4.173 28 C -0.156 4.156 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.160 0.840 34 H 0.247 0.753 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.021 0.979 41 H 0.098 0.902 42 H 0.237 0.763 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.555 -10.404 9.449 24.901 hybrid contribution 1.175 1.217 -0.913 1.922 sum -19.380 -9.187 8.536 23.084 Atomic orbital electron populations 1.20930 0.88605 1.04165 1.03619 1.20537 0.97970 0.92639 0.94567 1.21312 0.93388 0.99128 1.01870 1.21530 0.95384 0.96735 0.96148 1.19791 0.91546 0.95387 1.10456 1.18684 0.88084 0.83345 0.75866 1.90701 1.70982 1.31942 1.51513 1.45936 1.07412 1.09530 1.73813 1.20896 0.78517 0.95619 1.01569 1.22453 0.94978 0.95981 0.97570 0.86673 1.21435 0.90044 0.93148 0.93616 1.44653 1.17546 1.59567 1.12878 1.19412 1.01930 1.24130 0.91149 0.90625 1.25559 0.96682 1.01909 1.01612 1.69983 1.09124 1.46741 1.33917 0.85077 0.76614 0.78311 0.79318 1.21150 1.21889 1.19894 1.22449 0.96880 0.92874 0.87616 1.23120 0.92176 0.85663 0.95830 0.89216 1.86386 1.25827 1.41931 1.83571 1.20217 0.94466 0.94596 0.94602 1.20984 1.00248 0.93163 1.02857 1.21171 0.92268 0.99320 1.02845 0.89625 0.90109 0.90362 0.82927 0.83991 0.75301 0.93271 0.91140 0.97083 0.94974 0.94278 0.97940 0.90242 0.76293 0.91321 0.90402 0.91300 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.00 71.23 0.71 -0.24 16 2 C -0.06 -0.84 5.89 -19.81 -0.12 -0.95 16 3 C -0.14 -2.13 9.68 22.23 0.22 -1.91 16 4 C -0.08 -1.51 9.52 22.52 0.21 -1.29 16 5 C -0.17 -4.18 5.87 -20.09 -0.12 -4.30 16 6 C 0.55 16.55 7.70 86.79 0.67 17.22 16 7 O -0.57 -20.77 13.34 -3.89 -0.05 -20.82 16 8 N -0.71 -19.42 5.42 -465.97 -2.53 -21.95 16 9 C 0.16 4.96 4.50 86.38 0.39 5.35 16 10 C -0.09 -2.96 2.89 -9.61 -0.03 -2.98 16 11 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 12 C 0.14 5.87 6.75 86.73 0.59 6.45 16 13 N -0.62 -31.85 3.40 -691.97 -2.35 -34.20 16 14 C -0.24 -13.41 10.27 84.03 0.86 -12.55 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 16 C -0.07 -3.69 5.49 84.86 0.47 -3.22 16 17 N -0.95 -55.54 10.09 21.65 0.22 -55.32 16 18 Si 0.98 45.78 29.55 68.60 2.03 47.80 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 C 0.13 6.01 5.62 86.85 0.49 6.50 16 23 C 0.09 3.31 4.17 31.98 0.13 3.45 16 24 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 25 O -0.57 -21.01 12.33 -148.98 -1.84 -22.85 16 26 C -0.04 -0.87 5.91 -19.61 -0.12 -0.99 16 27 C -0.12 -2.73 8.73 71.24 0.62 -2.11 16 28 C -0.14 -2.39 9.31 22.23 0.21 -2.19 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.51 8.08 -2.39 -0.02 0.49 16 31 H 0.08 0.52 8.08 -2.38 -0.02 0.50 16 32 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.14 2.12 6.46 -2.91 -0.02 2.10 16 34 H 0.41 8.98 6.54 -92.71 -0.61 8.37 16 35 H 0.05 1.88 7.51 -2.39 -0.02 1.86 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.01 0.50 7.68 -2.39 -0.02 0.48 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.25 14.09 8.31 -92.70 -0.77 13.31 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.08 4.29 5.87 -2.39 -0.01 4.28 16 42 H 0.39 11.71 9.12 -74.06 -0.68 11.03 16 43 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 45 H 0.07 2.03 5.85 -2.39 -0.01 2.02 16 46 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -73.82 370.27 0.39 -73.43 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: -0.28 Total: 27.67 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.19 Total: 6.23 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -4.66 Total: -111.46 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -1.89 Total: -43.66 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -73.82 0.39 -73.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958644318.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.172 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds