Wall clock time and date at job start Tue Mar 31 2020 12:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48504 * 109.47175 * 269.99446 * 3 2 1 5 5 H 1.48498 * 109.47281 * 29.99632 * 3 2 1 6 6 H 1.48501 * 109.47188 * 149.99885 * 3 2 1 7 7 C 1.38812 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64772 * 0.04148 * 9 7 2 11 11 C 1.54375 * 107.28767 * 181.05517 * 10 9 7 12 12 C 1.55156 * 102.92099 * 22.13967 * 11 10 9 13 13 H 1.09003 * 111.00159 * 82.63771 * 12 11 10 14 14 C 1.52994 * 111.00115 * 206.45163 * 12 11 10 15 15 H 1.08997 * 109.49884 * 56.75856 * 14 12 11 16 16 C 1.53041 * 109.49700 * 176.82356 * 14 12 11 17 17 C 1.53042 * 109.54026 * 181.35002 * 16 14 12 18 18 C 1.53191 * 109.30786 * 298.63008 * 17 16 14 19 19 N 1.46920 * 108.77652 * 54.63900 * 18 17 16 20 20 C 1.34782 * 120.63430 * 126.38685 * 19 18 17 21 21 O 1.21694 * 120.00034 * 174.14042 * 20 19 18 22 22 C 1.46655 * 119.99695 * 354.13938 * 20 19 18 23 23 C 1.36541 * 125.98941 * 173.03721 * 22 20 19 24 24 C 1.40366 * 106.71254 * 179.97438 * 23 22 20 25 25 C 1.35132 * 107.11090 * 359.97438 * 24 23 22 26 26 O 1.33929 * 108.76642 * 359.75574 * 25 24 23 27 27 C 1.46922 * 118.73726 * 306.38698 * 19 18 17 28 28 C 1.47423 * 125.65201 * 180.02562 * 9 7 2 29 29 H 0.97006 * 119.99536 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.88107 * 300.44147 * 10 9 7 31 31 H 1.09003 * 109.88058 * 61.45418 * 10 9 7 32 32 H 1.09002 * 110.70081 * 263.79280 * 11 10 9 33 33 H 1.09004 * 110.75332 * 140.51210 * 11 10 9 34 34 H 1.09001 * 109.46335 * 61.32307 * 16 14 12 35 35 H 1.09000 * 109.44776 * 301.36574 * 16 14 12 36 36 H 1.08998 * 109.49629 * 58.58353 * 17 16 14 37 37 H 1.09007 * 109.49622 * 178.68086 * 17 16 14 38 38 H 1.09005 * 109.58177 * 174.42356 * 18 17 16 39 39 H 1.08997 * 109.59005 * 294.84839 * 18 17 16 40 40 H 1.08001 * 126.64575 * 359.97438 * 23 22 20 41 41 H 1.07995 * 126.44493 * 179.97438 * 24 23 22 42 42 H 1.08004 * 125.61342 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.58728 * 293.81768 * 27 19 18 44 44 H 1.09007 * 109.58957 * 173.39400 * 27 19 18 45 45 H 1.08997 * 110.36865 * 37.06853 * 28 9 7 46 46 H 1.08999 * 110.36513 * 274.74610 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4491 -4.0444 0.0269 12 6 0.8512 -4.6560 0.6121 13 1 0.8555 -4.5963 1.7005 14 6 1.0366 -6.1007 0.1442 15 1 1.0401 -6.1327 -0.9453 16 6 2.3654 -6.6432 0.6754 17 6 2.5677 -8.0770 0.1801 18 6 1.4365 -8.9616 0.7137 19 7 0.1494 -8.3664 0.3295 20 6 -0.7742 -9.0938 -0.3296 21 8 -1.8756 -8.6247 -0.5484 22 6 -0.4518 -10.4507 -0.7832 23 6 -1.3264 -11.3402 -1.3384 24 6 -0.5942 -12.5041 -1.6199 25 6 0.6794 -12.2768 -1.2296 26 8 0.7624 -11.0364 -0.7312 27 6 -0.1119 -6.9631 0.6774 28 6 1.9333 -3.7311 0.0016 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5585 -2.0519 0.8821 31 1 -0.5538 -2.0822 -0.9020 32 1 -0.6320 -4.4187 -0.9804 33 1 -1.2994 -4.2517 0.6767 34 1 2.3517 -6.6340 1.7653 35 1 3.1823 -6.0166 0.3174 36 1 2.5567 -8.0903 -0.9097 37 1 3.5251 -8.4544 0.5395 38 1 1.5200 -9.9600 0.2845 39 1 1.5013 -9.0220 1.8001 40 1 -2.3780 -11.1793 -1.5248 41 1 -0.9767 -13.4109 -2.0647 42 1 1.4968 -12.9781 -1.3106 43 1 -0.1734 -6.8605 1.7608 44 1 -1.0501 -6.6427 0.2241 45 1 2.8320 -3.7404 0.6182 46 1 2.1675 -4.0423 -1.0164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961100873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:17 Heat of formation + Delta-G solvation = 12.322203 kcal Electronic energy + Delta-G solvation = -27094.595261 eV Core-core repulsion = 23372.783961 eV Total energy + Delta-G solvation = -3721.811300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.06615 -40.16479 -38.28143 -36.74244 -33.87756 -33.28161 -32.32905 -31.27217 -30.15220 -28.88348 -27.25272 -25.76603 -24.58912 -22.98319 -22.79566 -22.08484 -20.91016 -19.85651 -19.82587 -19.48068 -17.83119 -17.01369 -16.74548 -16.56305 -15.99272 -15.38966 -14.80361 -14.60082 -14.51106 -14.14656 -13.87075 -13.70996 -13.49039 -13.28155 -13.09357 -13.05375 -12.76636 -12.27469 -12.12231 -11.84305 -11.74727 -11.19223 -11.01566 -10.89591 -10.81021 -10.77125 -10.58442 -10.40095 -10.34048 -10.06488 -9.93667 -9.75021 -9.63860 -9.55128 -9.09636 -8.68760 -8.54304 -6.76185 -5.65459 -2.98649 0.78305 2.04322 2.29469 2.87602 2.99441 3.42969 3.47507 3.49770 4.18167 4.52877 4.54500 4.59590 4.72346 4.83400 4.86718 4.97542 5.14740 5.17828 5.38385 5.41494 5.47361 5.52406 5.55985 5.59008 5.70061 5.74249 5.78797 5.84125 5.96754 5.98486 6.00314 6.05987 6.10450 6.28460 6.33003 6.44390 6.49621 6.54610 6.63374 6.66420 6.81032 7.04183 7.17685 7.62613 7.72278 7.86767 7.89950 8.32866 9.28263 9.89028 10.56032 11.46198 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.002610 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.460659 B =10724.504365 C =11263.809502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.141 4.141 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.087 4.087 15 H 0.074 0.926 16 C -0.117 4.117 17 C -0.132 4.132 18 C 0.089 3.911 19 N -0.600 5.600 20 C 0.598 3.402 21 O -0.520 6.520 22 C -0.073 4.073 23 C -0.122 4.122 24 C -0.223 4.223 25 C -0.020 4.020 26 O -0.157 6.157 27 C 0.118 3.882 28 C 0.145 3.855 29 H 0.251 0.749 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.208 0.792 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.036 0.964 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -27.059 0.389 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.155 4.155 17 C -0.170 4.170 18 C -0.032 4.032 19 N -0.332 5.332 20 C 0.386 3.614 21 O -0.398 6.398 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.242 4.242 25 C -0.088 4.088 26 O -0.053 6.053 27 C -0.004 4.004 28 C 0.019 3.981 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.225 0.775 43 H 0.089 0.911 44 H 0.115 0.885 45 H 0.054 0.946 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 2.302 -26.384 0.417 26.487 hybrid contribution 0.417 0.665 -0.146 0.799 sum 2.719 -25.718 0.271 25.863 Atomic orbital electron populations 1.69981 1.04863 1.24909 1.57214 1.24807 0.95716 0.97641 1.02465 0.86129 0.78546 0.83622 0.77530 1.21667 1.21713 1.20746 1.19053 0.90380 0.82522 1.43552 0.90556 1.44496 1.01813 0.99927 1.87108 1.21136 0.84244 0.88450 1.00897 1.22945 0.96063 0.99411 0.99503 1.22307 0.97647 0.91580 0.99937 0.90712 1.21479 0.93873 0.94466 1.00823 0.90763 1.21623 0.97916 0.95096 1.00819 1.21907 0.97692 0.95932 1.01492 1.22332 0.82312 0.98263 1.00317 1.48047 1.16458 1.12773 1.55876 1.16728 0.84495 0.82029 0.78159 1.90892 1.21493 1.69715 1.57691 1.22175 0.83751 0.96007 1.10474 1.21996 1.01137 0.92291 0.98845 1.21854 0.93846 1.00661 1.07829 1.24569 0.99559 0.85408 0.99307 1.84210 1.31753 1.25444 1.63901 1.21833 1.00199 0.77960 1.00377 1.21508 0.94121 0.85974 0.96500 0.93821 0.93758 0.94140 0.92559 0.92288 0.91717 0.90873 0.91487 0.90687 0.87524 0.91126 0.82250 0.82698 0.77534 0.91087 0.88464 0.94596 0.96652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.79 10.31 55.49 0.57 -27.22 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.61 16 8 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 9 N -0.61 -15.89 3.39 -170.06 -0.58 -16.47 16 10 C 0.18 4.45 5.38 -3.03 -0.02 4.43 16 11 C -0.14 -2.71 5.56 -24.87 -0.14 -2.85 16 12 C -0.09 -1.62 2.56 -88.49 -0.23 -1.85 16 13 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 14 C -0.09 -1.19 1.84 -90.50 -0.17 -1.36 16 15 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 16 C -0.12 -1.34 5.02 -26.69 -0.13 -1.47 16 17 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 18 C 0.09 0.85 6.33 -3.71 -0.02 0.83 16 19 N -0.60 -7.41 2.97 -174.32 -0.52 -7.92 16 20 C 0.60 8.26 7.65 -12.86 -0.10 8.17 16 21 O -0.52 -8.81 16.31 5.19 0.08 -8.73 16 22 C -0.07 -0.82 6.83 -36.80 -0.25 -1.08 16 23 C -0.12 -1.22 10.63 -39.39 -0.42 -1.64 16 24 C -0.22 -1.60 10.88 -39.89 -0.43 -2.04 16 25 C -0.02 -0.12 12.08 29.63 0.36 0.23 16 26 O -0.16 -1.41 7.14 5.00 0.04 -1.38 16 27 C 0.12 1.56 5.42 -3.71 -0.02 1.54 16 28 C 0.15 3.00 5.80 -2.54 -0.01 2.99 16 29 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 31 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 32 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.11 0.94 3.79 -55.03 -0.21 0.73 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.21 0.43 8.06 -52.48 -0.42 0.00 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.47 6.51 -51.93 -0.34 1.13 16 45 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 46 H 0.02 0.33 8.03 -51.93 -0.42 -0.09 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -33.70 360.84 -9.13 -42.83 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.15 Total: -1.55 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.00 Total: -2.48 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.52 Total: -51.61 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.12 Total: -10.10 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.70 -9.13 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961100873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.150 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds