Wall clock time and date at job start Tue Mar 31 2020 12:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00143 * 2 1 4 4 H 1.48504 * 109.47175 * 269.99446 * 3 2 1 5 5 H 1.48498 * 109.47281 * 29.99632 * 3 2 1 6 6 H 1.48501 * 109.47188 * 149.99885 * 3 2 1 7 7 C 1.38812 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00092 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00121 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64772 * 0.04148 * 9 7 2 11 11 C 1.54375 * 107.28767 * 181.05517 * 10 9 7 12 12 C 1.55156 * 102.92099 * 22.13967 * 11 10 9 13 13 H 1.09003 * 111.00159 * 82.63771 * 12 11 10 14 14 C 1.52994 * 111.00115 * 206.45163 * 12 11 10 15 15 H 1.08997 * 109.49884 * 56.75856 * 14 12 11 16 16 C 1.53041 * 109.49700 * 176.82356 * 14 12 11 17 17 C 1.53042 * 109.54026 * 181.35002 * 16 14 12 18 18 C 1.53191 * 109.30786 * 298.63008 * 17 16 14 19 19 N 1.46920 * 108.77652 * 54.63900 * 18 17 16 20 20 C 1.34782 * 120.63430 * 126.38685 * 19 18 17 21 21 O 1.21694 * 120.00034 * 174.14042 * 20 19 18 22 22 C 1.46655 * 119.99695 * 354.13938 * 20 19 18 23 23 C 1.36541 * 125.98941 * 173.03721 * 22 20 19 24 24 C 1.40366 * 106.71254 * 179.97438 * 23 22 20 25 25 C 1.35132 * 107.11090 * 359.97438 * 24 23 22 26 26 O 1.33929 * 108.76642 * 359.75574 * 25 24 23 27 27 C 1.46922 * 118.73726 * 306.38698 * 19 18 17 28 28 C 1.47423 * 125.65201 * 180.02562 * 9 7 2 29 29 H 0.97006 * 119.99536 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.88107 * 300.44147 * 10 9 7 31 31 H 1.09003 * 109.88058 * 61.45418 * 10 9 7 32 32 H 1.09002 * 110.70081 * 263.79280 * 11 10 9 33 33 H 1.09004 * 110.75332 * 140.51210 * 11 10 9 34 34 H 1.09001 * 109.46335 * 61.32307 * 16 14 12 35 35 H 1.09000 * 109.44776 * 301.36574 * 16 14 12 36 36 H 1.08998 * 109.49629 * 58.58353 * 17 16 14 37 37 H 1.09007 * 109.49622 * 178.68086 * 17 16 14 38 38 H 1.09005 * 109.58177 * 174.42356 * 18 17 16 39 39 H 1.08997 * 109.59005 * 294.84839 * 18 17 16 40 40 H 1.08001 * 126.64575 * 359.97438 * 23 22 20 41 41 H 1.07995 * 126.44493 * 179.97438 * 24 23 22 42 42 H 1.08004 * 125.61342 * 180.02562 * 25 24 23 43 43 H 1.09002 * 109.58728 * 293.81768 * 27 19 18 44 44 H 1.09007 * 109.58957 * 173.39400 * 27 19 18 45 45 H 1.08997 * 110.36865 * 37.06853 * 28 9 7 46 46 H 1.08999 * 110.36513 * 274.74610 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4491 -4.0444 0.0269 12 6 0.8512 -4.6560 0.6121 13 1 0.8555 -4.5963 1.7005 14 6 1.0366 -6.1007 0.1442 15 1 1.0401 -6.1327 -0.9453 16 6 2.3654 -6.6432 0.6754 17 6 2.5677 -8.0770 0.1801 18 6 1.4365 -8.9616 0.7137 19 7 0.1494 -8.3664 0.3295 20 6 -0.7742 -9.0938 -0.3296 21 8 -1.8756 -8.6247 -0.5484 22 6 -0.4518 -10.4507 -0.7832 23 6 -1.3264 -11.3402 -1.3384 24 6 -0.5942 -12.5041 -1.6199 25 6 0.6794 -12.2768 -1.2296 26 8 0.7624 -11.0364 -0.7312 27 6 -0.1119 -6.9631 0.6774 28 6 1.9333 -3.7311 0.0016 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5585 -2.0519 0.8821 31 1 -0.5538 -2.0822 -0.9020 32 1 -0.6320 -4.4187 -0.9804 33 1 -1.2994 -4.2517 0.6767 34 1 2.3517 -6.6340 1.7653 35 1 3.1823 -6.0166 0.3174 36 1 2.5567 -8.0903 -0.9097 37 1 3.5251 -8.4544 0.5395 38 1 1.5200 -9.9600 0.2845 39 1 1.5013 -9.0220 1.8001 40 1 -2.3780 -11.1793 -1.5248 41 1 -0.9767 -13.4109 -2.0647 42 1 1.4968 -12.9781 -1.3106 43 1 -0.1734 -6.8605 1.7608 44 1 -1.0501 -6.6427 0.2241 45 1 2.8320 -3.7404 0.6182 46 1 2.1675 -4.0423 -1.0164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961100873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:16 Heat of formation + Delta-G solvation = -8.289164 kcal Electronic energy + Delta-G solvation = -27095.489037 eV Core-core repulsion = 23372.783961 eV Total energy + Delta-G solvation = -3722.705076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.71707 -41.18279 -39.65109 -38.09850 -35.28376 -34.12620 -33.63659 -32.61459 -31.10471 -30.56438 -28.80034 -26.75626 -26.41144 -24.15870 -23.68058 -22.71645 -22.03326 -21.60880 -20.94087 -20.65483 -18.89325 -18.59491 -17.78395 -17.29384 -16.96154 -16.84026 -16.44109 -15.88276 -15.58892 -15.49573 -15.28519 -14.73065 -14.29063 -14.23048 -14.10083 -13.99823 -13.87830 -13.75224 -13.56371 -13.48083 -13.17654 -12.81431 -12.74980 -12.31321 -12.12808 -12.00724 -11.97530 -11.74646 -11.71913 -11.55506 -11.40596 -11.16482 -11.05536 -10.95823 -10.71488 -9.90900 -9.51695 -8.89917 -7.84797 -5.20821 0.02809 1.43999 1.44571 1.47300 1.55160 1.56032 2.03246 2.12162 2.49649 3.33077 3.42738 3.60347 3.70739 3.83128 3.89286 3.97086 4.06600 4.11783 4.18174 4.23795 4.34997 4.40264 4.49769 4.54445 4.69605 4.72173 4.76239 4.82592 4.86918 4.90069 4.92424 4.95841 5.04921 5.09766 5.13607 5.18326 5.34135 5.38983 5.41590 5.45261 5.54325 5.55698 5.66352 5.76890 5.89407 6.19871 6.27555 6.89721 7.09797 7.78298 8.43813 9.25993 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.002610 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.460659 B =10724.504365 C =11263.809502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.981 3.019 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.186 3.814 11 C -0.128 4.128 12 C -0.076 4.076 13 H 0.082 0.918 14 C -0.074 4.074 15 H 0.059 0.941 16 C -0.115 4.115 17 C -0.124 4.124 18 C 0.087 3.913 19 N -0.599 5.599 20 C 0.591 3.409 21 O -0.568 6.568 22 C -0.106 4.106 23 C -0.127 4.127 24 C -0.234 4.234 25 C 0.006 3.994 26 O -0.159 6.159 27 C 0.121 3.879 28 C 0.142 3.858 29 H 0.246 0.754 30 H 0.010 0.990 31 H -0.001 1.001 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.181 0.819 42 H 0.256 0.744 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.339 -30.157 0.923 30.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.265 4.265 3 Si 0.809 3.191 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.357 5.357 10 C 0.060 3.940 11 C -0.166 4.166 12 C -0.096 4.096 13 H 0.100 0.900 14 C -0.094 4.094 15 H 0.078 0.922 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.034 4.034 19 N -0.329 5.329 20 C 0.381 3.619 21 O -0.450 6.450 22 C -0.157 4.157 23 C -0.148 4.148 24 C -0.252 4.252 25 C -0.062 4.062 26 O -0.055 6.055 27 C -0.001 4.001 28 C 0.017 3.983 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.017 0.983 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.171 0.829 41 H 0.199 0.801 42 H 0.272 0.728 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.014 -29.525 0.961 29.963 hybrid contribution -0.374 1.505 -0.366 1.594 sum 4.640 -28.019 0.595 28.407 Atomic orbital electron populations 1.70224 1.06480 1.25205 1.58514 1.25729 0.96643 1.01293 1.02794 0.85034 0.77712 0.78885 0.77444 1.21390 1.22133 1.18966 1.19505 0.91077 0.83749 1.42682 0.89726 1.44848 1.02415 1.01452 1.86946 1.20878 0.83995 0.91799 0.97283 1.22788 0.98079 0.95282 1.00447 1.22175 0.94508 0.92941 0.99938 0.90004 1.21305 0.95874 0.92259 0.99924 0.92216 1.21613 0.95750 0.96334 1.01534 1.21868 0.98991 0.94403 1.00937 1.22571 0.80682 0.98672 1.01452 1.48127 1.17348 1.12147 1.55321 1.17093 0.84068 0.83016 0.77708 1.90850 1.23394 1.71114 1.59656 1.21695 0.85128 0.95562 1.13337 1.22244 1.01139 0.93367 0.98013 1.22185 0.94016 1.00632 1.08405 1.25547 1.00511 0.84323 0.95870 1.84154 1.30557 1.26574 1.64261 1.21667 0.98790 0.78842 1.00845 1.21691 0.95389 0.84176 0.97009 0.94508 0.97163 0.98288 0.92313 0.90566 0.90454 0.91304 0.92403 0.87750 0.86388 0.89429 0.82909 0.80120 0.72803 0.89758 0.90819 0.93404 0.96501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.99 10.31 21.65 0.22 -59.77 16 2 C -0.07 -4.25 5.49 84.86 0.47 -3.79 16 3 Si 0.98 47.01 29.55 68.60 2.03 49.03 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.24 -13.95 10.28 84.03 0.86 -13.09 16 8 H 0.08 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.63 -33.76 3.39 -691.93 -2.35 -36.11 16 10 C 0.19 9.77 5.38 86.75 0.47 10.24 16 11 C -0.13 -5.03 5.56 31.80 0.18 -4.85 16 12 C -0.08 -2.55 2.56 -9.41 -0.02 -2.57 16 13 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 14 C -0.07 -1.95 1.84 -10.72 -0.02 -1.97 16 15 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 16 C -0.11 -2.32 5.02 30.62 0.15 -2.16 16 17 C -0.12 -1.93 6.08 30.67 0.19 -1.74 16 18 C 0.09 1.40 6.33 86.36 0.55 1.95 16 19 N -0.60 -14.22 2.97 -823.64 -2.45 -16.67 16 20 C 0.59 16.49 7.65 86.44 0.66 17.15 16 21 O -0.57 -20.22 16.31 -4.33 -0.07 -20.29 16 22 C -0.11 -2.32 6.83 24.07 0.16 -2.15 16 23 C -0.13 -2.43 10.63 22.39 0.24 -2.19 16 24 C -0.23 -2.67 10.88 22.07 0.24 -2.43 16 25 C 0.01 0.05 12.08 67.10 0.81 0.86 16 26 O -0.16 -2.41 7.14 -5.01 -0.04 -2.45 16 27 C 0.12 3.13 5.42 86.36 0.47 3.59 16 28 C 0.14 5.84 5.80 86.85 0.50 6.34 16 29 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 30 H 0.01 0.59 7.38 -2.39 -0.02 0.58 16 31 H 0.00 -0.07 7.50 -2.39 -0.02 -0.09 16 32 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 33 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.48 7.32 -2.39 -0.02 1.46 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.07 16 38 H 0.12 1.70 3.79 -51.56 -0.20 1.51 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 42 H 0.26 -0.52 8.06 -2.91 -0.02 -0.55 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.07 2.28 6.51 -2.38 -0.02 2.26 16 45 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 46 H 0.02 0.71 8.03 -2.39 -0.02 0.69 16 Total: -1.00 -78.14 360.84 4.03 -74.11 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 0.78 Total: 8.95 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 5.90 Total: 3.19 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -4.57 Total: -112.54 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.11 Total: -22.74 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.03 kcal Total: -78.14 4.03 -74.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961100873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.821 kcal (2) G-P(sol) polarization free energy of solvation -78.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds