Wall clock time and date at job start Tue Mar 31 2020 12:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00216 * 3 2 1 5 5 H 1.48499 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46775 * 120.00503 * 3 2 1 7 7 C 1.38815 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64983 * 359.97375 * 9 7 2 11 11 C 1.54912 * 104.83344 * 155.90825 * 10 9 7 12 12 C 1.55156 * 101.58128 * 37.01007 * 11 10 9 13 13 H 1.08998 * 110.71968 * 83.04339 * 12 11 10 14 14 C 1.52999 * 110.71990 * 206.13530 * 12 11 10 15 15 H 1.08999 * 109.50109 * 59.93388 * 14 12 11 16 16 C 1.53051 * 109.49902 * 299.84044 * 14 12 11 17 17 C 1.53037 * 109.53995 * 178.68389 * 16 14 12 18 18 C 1.53194 * 109.31251 * 61.36048 * 17 16 14 19 19 N 1.46921 * 108.77720 * 305.36940 * 18 17 16 20 20 C 1.34780 * 120.62794 * 233.58607 * 19 18 17 21 21 O 1.21698 * 120.00107 * 172.66988 * 20 19 18 22 22 C 1.46663 * 120.00143 * 352.66448 * 20 19 18 23 23 C 1.36542 * 125.98743 * 172.40017 * 22 20 19 24 24 C 1.40364 * 106.70319 * 179.97438 * 23 22 20 25 25 C 1.35124 * 107.11987 * 359.97438 * 24 23 22 26 26 O 1.33933 * 108.76567 * 359.75835 * 25 24 23 27 27 C 1.46927 * 118.74325 * 53.60739 * 19 18 17 28 28 C 1.47030 * 125.65273 * 180.02562 * 9 7 2 29 29 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36536 * 37.06888 * 10 9 7 31 31 H 1.08994 * 110.37001 * 274.75128 * 10 9 7 32 32 H 1.09011 * 111.00438 * 278.93531 * 11 10 9 33 33 H 1.09002 * 111.03703 * 155.10270 * 11 10 9 34 34 H 1.09000 * 109.45566 * 298.70313 * 16 14 12 35 35 H 1.08996 * 109.45667 * 58.66233 * 16 14 12 36 36 H 1.09007 * 109.49629 * 301.41514 * 17 16 14 37 37 H 1.08998 * 109.52150 * 181.33131 * 17 16 14 38 38 H 1.08996 * 109.58809 * 185.57652 * 18 17 16 39 39 H 1.09001 * 109.58286 * 65.15233 * 18 17 16 40 40 H 1.07998 * 126.64791 * 359.97438 * 23 22 20 41 41 H 1.08006 * 126.43622 * 179.97438 * 24 23 22 42 42 H 1.08003 * 125.61627 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58909 * 186.60270 * 27 19 18 44 44 H 1.08999 * 109.58305 * 66.17907 * 27 19 18 45 45 H 1.09003 * 109.87590 * 61.60559 * 28 9 7 46 46 H 1.09000 * 109.87656 * 300.44708 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1416 -2.5332 0.0005 11 6 -0.4021 -3.9324 -0.6112 12 6 0.7783 -4.7524 -0.0270 13 1 0.5453 -5.1007 0.9792 14 6 1.1224 -5.9313 -0.9395 15 1 1.4049 -5.5589 -1.9242 16 6 -0.0955 -6.8489 -1.0698 17 6 0.2372 -8.0109 -2.0085 18 6 1.3940 -8.8236 -1.4185 19 7 2.5213 -7.9190 -1.1548 20 6 3.7453 -8.1839 -1.6531 21 8 4.6379 -7.3641 -1.5422 22 6 4.0015 -9.4601 -2.3289 23 6 5.1406 -9.7968 -3.0023 24 6 4.9532 -11.1015 -3.4848 25 6 3.7239 -11.4992 -3.0893 26 8 3.1557 -10.5095 -2.3883 27 6 2.2892 -6.7205 -0.3373 28 6 1.9317 -3.7276 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 -0.5998 -1.7589 -0.6147 31 1 -0.5266 -2.4868 1.0191 32 1 -0.3533 -3.8982 -1.6996 33 1 -1.3593 -4.3332 -0.2776 34 1 -0.3621 -7.2402 -0.0880 35 1 -0.9345 -6.2834 -1.4752 36 1 0.5278 -7.6193 -2.9834 37 1 -0.6378 -8.6513 -2.1198 38 1 1.7002 -9.5919 -2.1283 39 1 1.0745 -9.2905 -0.4867 40 1 6.0161 -9.1790 -3.1374 41 1 5.6591 -11.6790 -4.0634 42 1 3.2749 -12.4585 -3.3006 43 1 3.1861 -6.1011 -0.3339 44 1 2.0428 -7.0160 0.6825 45 1 2.5286 -3.8642 0.9012 46 1 2.5578 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961100877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:20 Heat of formation + Delta-G solvation = 11.218206 kcal Electronic energy + Delta-G solvation = -27141.926969 eV Core-core repulsion = 23420.067796 eV Total energy + Delta-G solvation = -3721.859173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.03976 -40.15462 -38.27268 -36.71309 -33.87131 -33.27712 -32.26734 -31.27398 -30.14990 -28.95131 -27.07100 -25.85154 -24.58339 -23.01419 -22.70883 -22.04229 -20.87166 -19.93281 -19.81838 -19.36446 -17.78632 -16.99958 -16.78467 -16.62137 -15.92733 -15.35276 -14.77364 -14.56880 -14.45851 -14.17593 -13.83456 -13.60222 -13.47491 -13.24787 -13.15990 -12.98911 -12.88656 -12.44874 -12.14334 -11.70297 -11.53498 -11.18512 -11.03365 -10.94533 -10.79572 -10.70213 -10.65173 -10.39085 -10.31504 -10.07444 -9.95425 -9.71948 -9.69560 -9.41163 -9.07381 -8.66535 -8.57378 -6.74612 -5.58107 -2.99005 0.80612 2.05909 2.33500 2.86761 3.04192 3.45773 3.49317 3.51051 4.20847 4.53689 4.56794 4.61230 4.72037 4.83216 4.87287 4.98359 5.17672 5.19428 5.39806 5.42927 5.48684 5.52100 5.53977 5.65654 5.69061 5.71107 5.79520 5.82838 5.91948 5.99512 6.00990 6.07267 6.10823 6.30165 6.33059 6.45901 6.50771 6.56227 6.67771 6.70801 6.85721 7.06769 7.20045 7.59398 7.70908 7.90095 7.92968 8.44261 9.30235 9.91342 10.56956 11.45840 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002850 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.822674 B = 9822.246074 C =10776.655799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.136 4.136 12 C -0.092 4.092 13 H 0.071 0.929 14 C -0.087 4.087 15 H 0.076 0.924 16 C -0.115 4.115 17 C -0.134 4.134 18 C 0.096 3.904 19 N -0.601 5.601 20 C 0.598 3.402 21 O -0.517 6.517 22 C -0.072 4.072 23 C -0.123 4.123 24 C -0.223 4.223 25 C -0.019 4.019 26 O -0.158 6.158 27 C 0.115 3.885 28 C 0.140 3.860 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.010 0.990 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.208 0.792 43 H 0.099 0.901 44 H 0.071 0.929 45 H 0.019 0.981 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -26.291 -5.809 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.112 4.112 13 H 0.089 0.911 14 C -0.106 4.106 15 H 0.094 0.906 16 C -0.152 4.152 17 C -0.172 4.172 18 C -0.026 4.026 19 N -0.333 5.333 20 C 0.385 3.615 21 O -0.394 6.394 22 C -0.123 4.123 23 C -0.143 4.143 24 C -0.242 4.242 25 C -0.089 4.089 26 O -0.055 6.055 27 C -0.006 4.006 28 C 0.014 3.986 29 H 0.062 0.938 30 H 0.122 0.878 31 H 0.028 0.972 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.178 0.822 41 H 0.173 0.827 42 H 0.225 0.775 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.037 0.963 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.613 -25.588 -5.582 26.240 hybrid contribution 0.610 0.599 -0.071 0.858 sum 2.223 -24.989 -5.653 25.717 Atomic orbital electron populations 1.69793 1.04867 1.24726 1.57981 1.24772 0.95719 0.97652 1.02696 0.86158 0.78389 0.83108 0.77910 1.21186 1.21621 1.21257 1.19063 0.90512 0.82585 1.42624 0.90599 1.44509 1.01999 0.99799 1.86776 1.21917 0.84707 0.92699 0.98016 1.23025 0.95794 0.98701 0.99901 1.22141 0.97529 0.93543 0.97968 0.91106 1.21519 0.94071 0.94859 1.00198 0.90582 1.21600 0.98282 0.95854 0.99497 1.21931 0.97618 0.97861 0.99781 1.22170 0.86556 0.92323 1.01546 1.48035 1.08344 1.25522 1.51357 1.16723 0.82940 0.83555 0.78261 1.90910 1.44444 1.45923 1.58152 1.22170 0.91891 0.89651 1.08611 1.22007 0.98317 0.96289 0.97725 1.21859 0.98513 0.96842 1.06952 1.24513 0.94428 0.93467 0.96446 1.84246 1.41115 1.21686 1.58417 1.21872 1.00480 0.85150 0.93085 1.21346 0.93697 0.85861 0.97723 0.93803 0.87775 0.97245 0.92301 0.92573 0.91814 0.90922 0.91512 0.90666 0.88130 0.91138 0.82221 0.82693 0.77516 0.88316 0.91096 0.96332 0.95829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.62 10.09 55.49 0.56 -27.06 16 2 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.36 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -16.09 3.39 -170.07 -0.58 -16.67 16 10 C 0.15 3.76 5.89 -2.53 -0.01 3.74 16 11 C -0.14 -2.55 5.38 -24.58 -0.13 -2.68 16 12 C -0.09 -1.59 2.49 -88.79 -0.22 -1.81 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.09 -1.23 1.74 -90.50 -0.16 -1.39 16 15 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 16 C -0.11 -1.29 4.97 -26.69 -0.13 -1.42 16 17 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 18 C 0.10 0.93 6.10 -3.71 -0.02 0.90 16 19 N -0.60 -7.65 2.97 -174.32 -0.52 -8.17 16 20 C 0.60 8.57 7.65 -12.86 -0.10 8.47 16 21 O -0.52 -9.18 16.30 5.19 0.08 -9.10 16 22 C -0.07 -0.84 6.76 -36.80 -0.25 -1.09 16 23 C -0.12 -1.28 10.63 -39.39 -0.42 -1.70 16 24 C -0.22 -1.66 10.87 -39.89 -0.43 -2.10 16 25 C -0.02 -0.13 12.08 29.62 0.36 0.23 16 26 O -0.16 -1.46 7.27 4.99 0.04 -1.42 16 27 C 0.12 1.59 5.48 -3.71 -0.02 1.57 16 28 C 0.14 3.03 6.10 -3.06 -0.02 3.02 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.10 2.91 5.87 -51.93 -0.31 2.60 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 1.11 8.05 -51.92 -0.42 0.70 16 33 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.84 7.20 -51.93 -0.37 0.46 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.90 4.26 -52.94 -0.23 0.68 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.10 1.60 6.55 -51.93 -0.34 1.26 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.02 0.53 7.77 -51.93 -0.40 0.13 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -33.73 360.16 -9.09 -42.81 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.10 Total: -0.89 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.97 Total: -2.66 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.54 Total: -51.90 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.12 Total: -10.52 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.73 -9.09 -42.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961100877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.030 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds