Wall clock time and date at job start Tue Mar 31 2020 12:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47175 * 240.00216 * 3 2 1 5 5 H 1.48499 * 109.47060 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46775 * 120.00503 * 3 2 1 7 7 C 1.38815 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00428 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.47429 * 125.64983 * 359.97375 * 9 7 2 11 11 C 1.54912 * 104.83344 * 155.90825 * 10 9 7 12 12 C 1.55156 * 101.58128 * 37.01007 * 11 10 9 13 13 H 1.08998 * 110.71968 * 83.04339 * 12 11 10 14 14 C 1.52999 * 110.71990 * 206.13530 * 12 11 10 15 15 H 1.08999 * 109.50109 * 59.93388 * 14 12 11 16 16 C 1.53051 * 109.49902 * 299.84044 * 14 12 11 17 17 C 1.53037 * 109.53995 * 178.68389 * 16 14 12 18 18 C 1.53194 * 109.31251 * 61.36048 * 17 16 14 19 19 N 1.46921 * 108.77720 * 305.36940 * 18 17 16 20 20 C 1.34780 * 120.62794 * 233.58607 * 19 18 17 21 21 O 1.21698 * 120.00107 * 172.66988 * 20 19 18 22 22 C 1.46663 * 120.00143 * 352.66448 * 20 19 18 23 23 C 1.36542 * 125.98743 * 172.40017 * 22 20 19 24 24 C 1.40364 * 106.70319 * 179.97438 * 23 22 20 25 25 C 1.35124 * 107.11987 * 359.97438 * 24 23 22 26 26 O 1.33933 * 108.76567 * 359.75835 * 25 24 23 27 27 C 1.46927 * 118.74325 * 53.60739 * 19 18 17 28 28 C 1.47030 * 125.65273 * 180.02562 * 9 7 2 29 29 H 0.97002 * 120.00528 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.36536 * 37.06888 * 10 9 7 31 31 H 1.08994 * 110.37001 * 274.75128 * 10 9 7 32 32 H 1.09011 * 111.00438 * 278.93531 * 11 10 9 33 33 H 1.09002 * 111.03703 * 155.10270 * 11 10 9 34 34 H 1.09000 * 109.45566 * 298.70313 * 16 14 12 35 35 H 1.08996 * 109.45667 * 58.66233 * 16 14 12 36 36 H 1.09007 * 109.49629 * 301.41514 * 17 16 14 37 37 H 1.08998 * 109.52150 * 181.33131 * 17 16 14 38 38 H 1.08996 * 109.58809 * 185.57652 * 18 17 16 39 39 H 1.09001 * 109.58286 * 65.15233 * 18 17 16 40 40 H 1.07998 * 126.64791 * 359.97438 * 23 22 20 41 41 H 1.08006 * 126.43622 * 179.97438 * 24 23 22 42 42 H 1.08003 * 125.61627 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58909 * 186.60270 * 27 19 18 44 44 H 1.08999 * 109.58305 * 66.17907 * 27 19 18 45 45 H 1.09003 * 109.87590 * 61.60559 * 28 9 7 46 46 H 1.09000 * 109.87656 * 300.44708 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1416 -2.5332 0.0005 11 6 -0.4021 -3.9324 -0.6112 12 6 0.7783 -4.7524 -0.0270 13 1 0.5453 -5.1007 0.9792 14 6 1.1224 -5.9313 -0.9395 15 1 1.4049 -5.5589 -1.9242 16 6 -0.0955 -6.8489 -1.0698 17 6 0.2372 -8.0109 -2.0085 18 6 1.3940 -8.8236 -1.4185 19 7 2.5213 -7.9190 -1.1548 20 6 3.7453 -8.1839 -1.6531 21 8 4.6379 -7.3641 -1.5422 22 6 4.0015 -9.4601 -2.3289 23 6 5.1406 -9.7968 -3.0023 24 6 4.9532 -11.1015 -3.4848 25 6 3.7239 -11.4992 -3.0893 26 8 3.1557 -10.5095 -2.3883 27 6 2.2892 -6.7205 -0.3373 28 6 1.9317 -3.7276 -0.0005 29 1 -0.4851 0.8400 0.0004 30 1 -0.5998 -1.7589 -0.6147 31 1 -0.5266 -2.4868 1.0191 32 1 -0.3533 -3.8982 -1.6996 33 1 -1.3593 -4.3332 -0.2776 34 1 -0.3621 -7.2402 -0.0880 35 1 -0.9345 -6.2834 -1.4752 36 1 0.5278 -7.6193 -2.9834 37 1 -0.6378 -8.6513 -2.1198 38 1 1.7002 -9.5919 -2.1283 39 1 1.0745 -9.2905 -0.4867 40 1 6.0161 -9.1790 -3.1374 41 1 5.6591 -11.6790 -4.0634 42 1 3.2749 -12.4585 -3.3006 43 1 3.1861 -6.1011 -0.3339 44 1 2.0428 -7.0160 0.6825 45 1 2.5286 -3.8642 0.9012 46 1 2.5578 -3.8510 -0.8842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961100877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:19 Heat of formation + Delta-G solvation = -9.533758 kcal Electronic energy + Delta-G solvation = -27142.826841 eV Core-core repulsion = 23420.067796 eV Total energy + Delta-G solvation = -3722.759046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.71908 -41.20869 -39.66497 -38.09231 -35.32255 -34.12490 -33.62732 -32.56884 -31.25742 -30.53493 -28.65514 -26.96705 -26.31505 -24.14213 -23.69049 -22.70763 -21.99107 -21.68918 -20.86181 -20.65610 -18.95050 -18.57697 -17.78704 -17.44069 -16.91321 -16.88364 -16.43685 -15.86526 -15.63112 -15.40286 -15.25826 -14.66637 -14.43642 -14.20260 -14.15991 -14.06636 -13.92885 -13.68657 -13.52691 -13.40072 -13.17908 -12.89928 -12.72494 -12.30088 -12.17935 -12.08182 -11.87059 -11.83214 -11.71712 -11.56774 -11.30304 -11.20071 -11.08902 -10.96985 -10.74870 -9.91517 -9.52970 -8.89585 -7.79181 -5.23540 0.01609 1.43022 1.43361 1.46858 1.53345 1.54305 1.97989 2.14211 2.47799 3.28923 3.43491 3.63151 3.69802 3.79138 3.90533 3.96997 4.07277 4.10010 4.19699 4.24939 4.29661 4.41267 4.52200 4.56373 4.68782 4.69946 4.75611 4.81958 4.85659 4.89044 4.91050 4.97837 5.03352 5.11917 5.12860 5.19500 5.34334 5.37523 5.40516 5.43116 5.51843 5.53797 5.68599 5.82175 5.86558 6.25971 6.30988 6.88532 7.10323 7.77799 8.41740 9.22254 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022836 B = 0.002850 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.822674 B = 9822.246074 C =10776.655799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.117 4.117 12 C -0.075 4.075 13 H 0.089 0.911 14 C -0.075 4.075 15 H 0.051 0.949 16 C -0.111 4.111 17 C -0.127 4.127 18 C 0.093 3.907 19 N -0.599 5.599 20 C 0.589 3.411 21 O -0.571 6.571 22 C -0.104 4.104 23 C -0.129 4.129 24 C -0.234 4.234 25 C 0.009 3.991 26 O -0.158 6.158 27 C 0.118 3.882 28 C 0.136 3.864 29 H 0.248 0.752 30 H 0.070 0.930 31 H -0.012 1.012 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.151 0.849 41 H 0.182 0.818 42 H 0.259 0.741 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.015 0.985 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -29.880 -6.342 30.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.155 4.155 12 C -0.094 4.094 13 H 0.107 0.893 14 C -0.095 4.095 15 H 0.069 0.931 16 C -0.148 4.148 17 C -0.165 4.165 18 C -0.028 4.028 19 N -0.330 5.330 20 C 0.379 3.621 21 O -0.453 6.453 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.253 4.253 25 C -0.060 4.060 26 O -0.055 6.055 27 C -0.004 4.004 28 C 0.010 3.990 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.199 0.801 42 H 0.274 0.726 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.033 0.967 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.420 -29.222 -6.118 29.858 hybrid contribution 1.017 1.620 0.056 1.914 sum 1.438 -27.601 -6.062 28.296 Atomic orbital electron populations 1.70049 1.06083 1.25146 1.58436 1.25632 0.96733 1.00901 1.02582 0.85124 0.77193 0.78723 0.78128 1.20481 1.21363 1.20481 1.19404 0.90838 0.84187 1.42957 0.90931 1.44854 1.03077 1.00820 1.86722 1.21762 0.83687 0.95433 0.96528 1.22847 0.98059 0.95141 0.99446 1.22046 0.94566 0.93188 0.99640 0.89303 1.21355 0.95919 0.94316 0.97882 0.93082 1.21592 0.96247 0.95799 1.01170 1.21914 0.98667 0.97514 0.98425 1.22439 0.85359 0.92002 1.02951 1.48138 1.08926 1.25335 1.50573 1.17132 0.82773 0.84213 0.77951 1.90865 1.46036 1.47937 1.60461 1.21622 0.93169 0.89846 1.10928 1.22244 0.97704 0.97774 0.97307 1.22186 0.99850 0.95624 1.07610 1.25528 0.93682 0.93686 0.93084 1.84206 1.40791 1.21559 1.58909 1.21710 0.98832 0.85561 0.94317 1.21504 0.95340 0.85354 0.96760 0.94209 0.91214 0.99374 0.92478 0.89028 0.89875 0.90711 0.92872 0.87338 0.87107 0.89037 0.83166 0.80092 0.72561 0.91707 0.89218 0.96715 0.97147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.42 10.09 21.65 0.22 -58.20 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 47.84 29.55 68.60 2.03 49.86 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.24 -14.74 10.27 84.04 0.86 -13.88 16 8 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.63 -34.79 3.39 -691.97 -2.35 -37.14 16 10 C 0.15 7.71 5.89 86.86 0.51 8.22 16 11 C -0.12 -4.31 5.38 31.99 0.17 -4.14 16 12 C -0.08 -2.54 2.49 -9.61 -0.02 -2.57 16 13 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 14 C -0.08 -2.07 1.74 -10.71 -0.02 -2.09 16 15 H 0.05 1.67 8.06 -2.39 -0.02 1.65 16 16 C -0.11 -2.13 4.97 30.62 0.15 -1.98 16 17 C -0.13 -1.97 6.08 30.67 0.19 -1.79 16 18 C 0.09 1.53 6.10 86.36 0.53 2.05 16 19 N -0.60 -14.99 2.97 -823.63 -2.45 -17.44 16 20 C 0.59 17.49 7.65 86.44 0.66 18.15 16 21 O -0.57 -21.92 16.30 -4.34 -0.07 -21.99 16 22 C -0.10 -2.40 6.76 24.07 0.16 -2.23 16 23 C -0.13 -2.65 10.63 22.39 0.24 -2.41 16 24 C -0.23 -2.84 10.87 22.07 0.24 -2.60 16 25 C 0.01 0.08 12.08 67.10 0.81 0.89 16 26 O -0.16 -2.46 7.27 -5.05 -0.04 -2.50 16 27 C 0.12 3.26 5.48 86.36 0.47 3.74 16 28 C 0.14 6.13 6.10 86.73 0.53 6.65 16 29 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.06 2.13 8.05 -2.38 -0.02 2.12 16 33 H 0.09 2.77 8.08 -2.39 -0.02 2.75 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.46 7.20 -2.39 -0.02 1.44 16 36 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.64 4.26 -18.30 -0.08 1.57 16 39 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 41 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.26 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.06 2.24 6.55 -2.39 -0.02 2.23 16 44 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.01 0.50 7.77 -2.39 -0.02 0.48 16 Total: -1.00 -79.57 360.16 4.19 -75.37 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.90 Total: 9.47 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.95 Total: 2.57 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -4.58 Total: -112.78 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.11 Total: -24.49 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -79.57 4.19 -75.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961100877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.841 kcal (2) G-P(sol) polarization free energy of solvation -79.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds