Wall clock time and date at job start Tue Mar 31 2020 12:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99967 * 2 1 4 4 H 1.48499 * 109.46864 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47200 * 120.00078 * 3 2 1 6 6 H 1.48504 * 109.46910 * 240.00285 * 3 2 1 7 7 C 1.38818 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65109 * 14.55627 * 9 7 2 11 11 C 1.55126 * 104.72409 * 155.81638 * 10 9 7 12 12 C 1.55152 * 101.48399 * 37.29649 * 11 10 9 13 13 C 1.47024 * 125.64668 * 194.86560 * 9 7 2 14 14 H 1.09002 * 109.88102 * 300.44045 * 13 9 7 15 15 C 1.52999 * 109.88450 * 61.45025 * 13 9 7 16 16 H 1.09002 * 109.49568 * 302.27561 * 15 13 9 17 17 C 1.53041 * 109.49781 * 62.36662 * 15 13 9 18 18 C 1.53034 * 109.53841 * 181.31602 * 17 15 13 19 19 C 1.53187 * 109.31486 * 298.63740 * 18 17 15 20 20 N 1.46918 * 108.77660 * 54.63582 * 19 18 17 21 21 C 1.34776 * 120.63337 * 126.37314 * 20 19 18 22 22 O 1.21695 * 120.00119 * 186.21651 * 21 20 19 23 23 C 1.46653 * 119.99740 * 6.21050 * 21 20 19 24 24 C 1.36550 * 125.98258 * 187.56581 * 23 21 20 25 25 C 1.40366 * 106.70473 * 179.97438 * 24 23 21 26 26 C 1.35135 * 107.11679 * 0.02562 * 25 24 23 27 27 O 1.33936 * 108.76592 * 359.76796 * 26 25 24 28 28 C 1.46934 * 118.73629 * 306.39056 * 20 19 18 29 29 H 0.96996 * 120.00318 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36478 * 274.74888 * 10 9 7 31 31 H 1.09006 * 110.36754 * 37.06749 * 10 9 7 32 32 H 1.09001 * 111.19376 * 279.18947 * 11 10 9 33 33 H 1.08999 * 110.93981 * 155.28833 * 11 10 9 34 34 H 1.09008 * 110.72199 * 205.96712 * 12 11 10 35 35 H 1.09000 * 110.72493 * 82.69704 * 12 11 10 36 36 H 1.09004 * 109.45775 * 301.33989 * 17 15 13 37 37 H 1.08997 * 109.45813 * 61.29598 * 17 15 13 38 38 H 1.09009 * 109.50167 * 178.68223 * 18 17 15 39 39 H 1.09005 * 109.52512 * 58.60860 * 18 17 15 40 40 H 1.09008 * 109.58770 * 294.84375 * 19 18 17 41 41 H 1.09004 * 109.59051 * 174.42582 * 19 18 17 42 42 H 1.08000 * 126.65186 * 359.93063 * 24 23 21 43 43 H 1.07999 * 126.44417 * 179.97438 * 25 24 23 44 44 H 1.07999 * 125.61962 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.58801 * 293.81846 * 28 20 19 46 46 H 1.08998 * 109.58277 * 173.39560 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1083 -2.5524 -0.3011 11 6 -0.2455 -4.0226 -0.7763 12 6 0.7638 -4.7439 0.1554 13 6 1.8973 -3.7075 0.3055 14 1 2.7019 -3.9342 -0.3942 15 6 2.4343 -3.7225 1.7381 16 1 3.1791 -2.9354 1.8556 17 6 1.2824 -3.4869 2.7178 18 6 1.8234 -3.4690 4.1491 19 6 2.4591 -4.8259 4.4675 20 7 3.4696 -5.1265 3.4443 21 6 4.7329 -5.4366 3.7969 22 8 5.5875 -5.5726 2.9413 23 6 5.0776 -5.6101 5.2117 24 6 6.3351 -5.7796 5.7162 25 6 6.1983 -5.9044 7.1075 26 6 4.8799 -5.8074 7.3878 27 8 4.2084 -5.6254 6.2434 28 6 3.0768 -5.0823 2.0291 29 1 -0.4850 0.8400 0.0004 30 1 -0.7054 -2.3835 0.5950 31 1 -0.4105 -1.8681 -1.0939 32 1 0.0441 -4.1275 -1.8219 33 1 -1.2585 -4.3913 -0.6148 34 1 1.1350 -5.6566 -0.3109 35 1 0.3094 -4.9610 1.1221 36 1 0.8077 -2.5308 2.4969 37 1 0.5500 -4.2877 2.6164 38 1 1.0062 -3.2779 4.8447 39 1 2.5738 -2.6842 4.2452 40 1 1.6912 -5.5996 4.4613 41 1 2.9329 -4.7864 5.4484 42 1 7.2565 -5.8121 5.1536 43 1 6.9965 -6.0513 7.8201 44 1 4.4406 -5.8630 8.3728 45 1 2.3594 -5.8769 1.8240 46 1 3.9582 -5.2119 1.4011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963208899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:05 Heat of formation + Delta-G solvation = 15.081637 kcal Electronic energy + Delta-G solvation = -27896.746659 eV Core-core repulsion = 24175.055017 eV Total energy + Delta-G solvation = -3721.691642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.91603 -39.97466 -38.27736 -36.46123 -33.43990 -32.85411 -32.24519 -31.32611 -30.00209 -29.27520 -26.69889 -25.55437 -24.51333 -22.95137 -22.49621 -21.89428 -21.13607 -20.27285 -19.69951 -18.37240 -17.63248 -16.84206 -16.67216 -16.37668 -15.76402 -15.11450 -14.74988 -14.50464 -14.21106 -14.17996 -13.84604 -13.53041 -13.32410 -13.10579 -12.96921 -12.82828 -12.61976 -12.14004 -11.96332 -11.79613 -11.54056 -11.08544 -10.87345 -10.80794 -10.64716 -10.41564 -10.26712 -10.21471 -10.15896 -10.05295 -9.88924 -9.65013 -9.62311 -9.41339 -8.94576 -8.54658 -8.43940 -6.73595 -5.71993 -3.06376 0.93462 2.17149 2.47953 3.04008 3.20563 3.41552 3.46227 3.47323 4.36161 4.51340 4.68363 4.74912 5.02568 5.20059 5.24383 5.25513 5.37011 5.47373 5.50359 5.55528 5.57813 5.73856 5.75711 5.76264 5.81049 5.92871 5.94907 6.04449 6.10154 6.12378 6.22235 6.29995 6.38660 6.47310 6.56701 6.63974 6.65453 6.72930 6.80774 6.99130 7.06774 7.16790 7.40116 7.57911 7.66210 7.83775 8.05822 8.32246 9.24023 9.84994 10.54297 11.39993 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.003755 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.657579 B = 7454.634449 C = 8168.955333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.072 0.928 9 N -0.590 5.590 10 C 0.175 3.825 11 C -0.150 4.150 12 C -0.132 4.132 13 C 0.168 3.832 14 H 0.034 0.966 15 C -0.105 4.105 16 H 0.073 0.927 17 C -0.107 4.107 18 C -0.133 4.133 19 C 0.096 3.904 20 N -0.595 5.595 21 C 0.596 3.404 22 O -0.526 6.526 23 C -0.069 4.069 24 C -0.126 4.126 25 C -0.224 4.224 26 C -0.021 4.021 27 O -0.156 6.156 28 C 0.115 3.885 29 H 0.252 0.748 30 H 0.025 0.975 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.207 0.793 45 H 0.069 0.931 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -13.332 13.659 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.090 0.910 9 N -0.314 5.314 10 C 0.050 3.950 11 C -0.188 4.188 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.051 0.949 15 C -0.127 4.127 16 H 0.092 0.908 17 C -0.144 4.144 18 C -0.171 4.171 19 C -0.025 4.025 20 N -0.326 5.326 21 C 0.384 3.616 22 O -0.404 6.404 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.243 4.243 26 C -0.090 4.090 27 O -0.053 6.053 28 C -0.006 4.006 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.177 0.823 43 H 0.172 0.828 44 H 0.224 0.776 45 H 0.087 0.913 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.390 -13.109 13.108 19.051 hybrid contribution 0.653 0.966 0.388 1.229 sum 5.043 -12.142 13.496 18.842 Atomic orbital electron populations 1.69918 1.04881 1.25130 1.56539 1.24842 0.95592 0.97552 1.01949 0.86299 0.78598 0.83516 0.77971 1.21667 1.21225 1.21168 1.18905 0.90272 0.82332 1.43770 0.91009 1.44470 1.06110 1.01156 1.79651 1.21443 0.85093 0.89925 0.98537 1.23040 0.97398 0.99831 0.98554 1.22723 0.97309 0.97187 0.99727 1.20880 0.94069 0.87327 0.91781 0.94872 1.21977 0.97725 0.94984 0.97966 0.90824 1.21526 0.97375 1.03537 0.91949 1.21939 1.00375 0.96002 0.98817 1.22220 0.91207 0.97712 0.91403 1.48079 1.09056 1.66764 1.08700 1.16727 0.82677 0.77694 0.84521 1.90865 1.47887 1.52920 1.48772 1.22219 0.89089 1.12699 0.88022 1.21971 0.97468 1.00769 0.94412 1.21838 0.97109 1.09284 0.96031 1.24522 0.92013 1.02536 0.89918 1.84280 1.36687 1.69484 1.14803 1.21907 1.00433 0.98781 0.79527 0.93753 0.95748 0.91368 0.92501 0.92644 0.92616 0.91338 0.89467 0.92524 0.91125 0.91736 0.91337 0.88351 0.82337 0.82784 0.77594 0.91311 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.25 10.57 55.49 0.59 -25.66 16 2 C 0.00 -0.07 5.47 -17.43 -0.10 -0.17 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.22 -6.07 9.76 -15.06 -0.15 -6.21 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -14.30 2.47 -162.44 -0.40 -14.71 16 10 C 0.17 4.09 5.42 -2.41 -0.01 4.07 16 11 C -0.15 -2.75 7.10 -24.47 -0.17 -2.93 16 12 C -0.13 -2.21 5.21 -24.90 -0.13 -2.34 16 13 C 0.17 3.33 2.90 -66.95 -0.19 3.13 16 14 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.11 -1.90 2.13 -90.50 -0.19 -2.09 16 16 H 0.07 1.56 7.92 -51.93 -0.41 1.15 16 17 C -0.11 -1.82 4.71 -26.69 -0.13 -1.95 16 18 C -0.13 -1.91 6.08 -26.62 -0.16 -2.07 16 19 C 0.10 1.23 6.13 -3.72 -0.02 1.21 16 20 N -0.59 -8.94 2.97 -174.32 -0.52 -9.45 16 21 C 0.60 9.52 7.65 -12.86 -0.10 9.42 16 22 O -0.53 -9.87 16.29 5.19 0.08 -9.78 16 23 C -0.07 -0.91 6.78 -36.80 -0.25 -1.16 16 24 C -0.13 -1.46 10.63 -39.39 -0.42 -1.88 16 25 C -0.22 -1.96 10.87 -39.89 -0.43 -2.39 16 26 C -0.02 -0.17 12.08 29.63 0.36 0.19 16 27 O -0.16 -1.73 7.22 4.99 0.04 -1.69 16 28 C 0.12 1.82 5.62 -3.71 -0.02 1.80 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.07 1.80 6.93 -51.93 -0.36 1.44 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.07 1.08 5.49 -51.93 -0.29 0.80 16 36 H 0.09 1.86 7.66 -51.93 -0.40 1.46 16 37 H 0.06 0.89 5.95 -51.93 -0.31 0.58 16 38 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.10 1.16 4.17 -53.42 -0.22 0.94 16 42 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.21 0.76 8.06 -52.49 -0.42 0.33 16 45 H 0.07 0.98 7.22 -51.93 -0.37 0.60 16 46 H 0.09 1.52 7.00 -51.93 -0.36 1.15 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -31.16 356.63 -8.90 -40.06 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.92 Total: 2.20 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -2.12 Total: -3.37 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.33 Total: -49.82 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.12 Total: -11.47 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.16 -8.90 -40.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963208899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.142 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds