Wall clock time and date at job start Tue Mar 31 2020 12:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99967 * 2 1 4 4 H 1.48499 * 109.46864 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47200 * 120.00078 * 3 2 1 6 6 H 1.48504 * 109.46910 * 240.00285 * 3 2 1 7 7 C 1.38818 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00189 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99588 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.65109 * 14.55627 * 9 7 2 11 11 C 1.55126 * 104.72409 * 155.81638 * 10 9 7 12 12 C 1.55152 * 101.48399 * 37.29649 * 11 10 9 13 13 C 1.47024 * 125.64668 * 194.86560 * 9 7 2 14 14 H 1.09002 * 109.88102 * 300.44045 * 13 9 7 15 15 C 1.52999 * 109.88450 * 61.45025 * 13 9 7 16 16 H 1.09002 * 109.49568 * 302.27561 * 15 13 9 17 17 C 1.53041 * 109.49781 * 62.36662 * 15 13 9 18 18 C 1.53034 * 109.53841 * 181.31602 * 17 15 13 19 19 C 1.53187 * 109.31486 * 298.63740 * 18 17 15 20 20 N 1.46918 * 108.77660 * 54.63582 * 19 18 17 21 21 C 1.34776 * 120.63337 * 126.37314 * 20 19 18 22 22 O 1.21695 * 120.00119 * 186.21651 * 21 20 19 23 23 C 1.46653 * 119.99740 * 6.21050 * 21 20 19 24 24 C 1.36550 * 125.98258 * 187.56581 * 23 21 20 25 25 C 1.40366 * 106.70473 * 179.97438 * 24 23 21 26 26 C 1.35135 * 107.11679 * 0.02562 * 25 24 23 27 27 O 1.33936 * 108.76592 * 359.76796 * 26 25 24 28 28 C 1.46934 * 118.73629 * 306.39056 * 20 19 18 29 29 H 0.96996 * 120.00318 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36478 * 274.74888 * 10 9 7 31 31 H 1.09006 * 110.36754 * 37.06749 * 10 9 7 32 32 H 1.09001 * 111.19376 * 279.18947 * 11 10 9 33 33 H 1.08999 * 110.93981 * 155.28833 * 11 10 9 34 34 H 1.09008 * 110.72199 * 205.96712 * 12 11 10 35 35 H 1.09000 * 110.72493 * 82.69704 * 12 11 10 36 36 H 1.09004 * 109.45775 * 301.33989 * 17 15 13 37 37 H 1.08997 * 109.45813 * 61.29598 * 17 15 13 38 38 H 1.09009 * 109.50167 * 178.68223 * 18 17 15 39 39 H 1.09005 * 109.52512 * 58.60860 * 18 17 15 40 40 H 1.09008 * 109.58770 * 294.84375 * 19 18 17 41 41 H 1.09004 * 109.59051 * 174.42582 * 19 18 17 42 42 H 1.08000 * 126.65186 * 359.93063 * 24 23 21 43 43 H 1.07999 * 126.44417 * 179.97438 * 25 24 23 44 44 H 1.07999 * 125.61962 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.58801 * 293.81846 * 28 20 19 46 46 H 1.08998 * 109.58277 * 173.39560 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1083 -2.5524 -0.3011 11 6 -0.2455 -4.0226 -0.7763 12 6 0.7638 -4.7439 0.1554 13 6 1.8973 -3.7075 0.3055 14 1 2.7019 -3.9342 -0.3942 15 6 2.4343 -3.7225 1.7381 16 1 3.1791 -2.9354 1.8556 17 6 1.2824 -3.4869 2.7178 18 6 1.8234 -3.4690 4.1491 19 6 2.4591 -4.8259 4.4675 20 7 3.4696 -5.1265 3.4443 21 6 4.7329 -5.4366 3.7969 22 8 5.5875 -5.5726 2.9413 23 6 5.0776 -5.6101 5.2117 24 6 6.3351 -5.7796 5.7162 25 6 6.1983 -5.9044 7.1075 26 6 4.8799 -5.8074 7.3878 27 8 4.2084 -5.6254 6.2434 28 6 3.0768 -5.0823 2.0291 29 1 -0.4850 0.8400 0.0004 30 1 -0.7054 -2.3835 0.5950 31 1 -0.4105 -1.8681 -1.0939 32 1 0.0441 -4.1275 -1.8219 33 1 -1.2585 -4.3913 -0.6148 34 1 1.1350 -5.6566 -0.3109 35 1 0.3094 -4.9610 1.1221 36 1 0.8077 -2.5308 2.4969 37 1 0.5500 -4.2877 2.6164 38 1 1.0062 -3.2779 4.8447 39 1 2.5738 -2.6842 4.2452 40 1 1.6912 -5.5996 4.4613 41 1 2.9329 -4.7864 5.4484 42 1 7.2565 -5.8121 5.1536 43 1 6.9965 -6.0513 7.8201 44 1 4.4406 -5.8630 8.3728 45 1 2.3594 -5.8769 1.8240 46 1 3.9582 -5.2119 1.4011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963208899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:04 Heat of formation + Delta-G solvation = -3.000140 kcal Electronic energy + Delta-G solvation = -27897.530743 eV Core-core repulsion = 24175.055017 eV Total energy + Delta-G solvation = -3722.475727 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.71573 -41.24027 -39.75875 -37.86929 -34.78471 -34.16715 -33.69807 -32.62637 -31.25820 -30.83343 -28.20368 -26.74688 -26.45125 -24.23170 -23.62415 -22.69192 -22.44022 -21.84517 -20.93250 -19.87417 -18.79946 -18.43647 -17.76671 -17.35893 -17.06020 -16.69753 -16.32235 -15.90374 -15.70392 -15.54753 -15.32201 -14.73342 -14.42069 -14.19275 -14.10314 -13.94196 -13.82288 -13.61656 -13.53536 -13.20570 -13.13960 -12.87574 -12.73706 -12.45016 -12.06622 -11.98278 -11.82084 -11.71723 -11.65293 -11.46694 -11.37377 -11.15917 -10.98744 -10.92550 -10.62978 -9.90461 -9.52356 -8.74123 -7.84812 -5.19007 0.02726 1.42130 1.43246 1.44134 1.49845 1.56865 1.98928 2.16062 2.48754 3.33138 3.44287 3.66142 3.81344 3.90061 3.96497 4.04781 4.09950 4.15215 4.27762 4.28415 4.34778 4.41206 4.47012 4.53184 4.68532 4.76427 4.77523 4.81564 4.84795 4.90131 4.93242 5.06816 5.09685 5.15404 5.24017 5.29253 5.37649 5.45439 5.49503 5.53137 5.58584 5.66193 5.72408 5.84429 5.88222 6.27025 6.28600 6.89048 7.14970 7.83402 8.50391 9.25614 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.003755 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.657579 B = 7454.634449 C = 8168.955333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.053 4.053 3 Si 0.962 3.038 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.180 3.820 11 C -0.136 4.136 12 C -0.117 4.117 13 C 0.158 3.842 14 H 0.022 0.978 15 C -0.093 4.093 16 H 0.029 0.971 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.101 3.899 20 N -0.598 5.598 21 C 0.591 3.409 22 O -0.570 6.570 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.233 4.233 26 C 0.006 3.994 27 O -0.161 6.161 28 C 0.125 3.875 29 H 0.246 0.754 30 H 0.001 0.999 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.039 0.961 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.154 0.846 43 H 0.183 0.817 44 H 0.257 0.743 45 H 0.097 0.903 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 -15.807 16.408 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.080 0.920 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.155 4.155 13 C 0.051 3.949 14 H 0.039 0.961 15 C -0.115 4.115 16 H 0.047 0.953 17 C -0.134 4.134 18 C -0.165 4.165 19 C -0.019 4.019 20 N -0.328 5.328 21 C 0.381 3.619 22 O -0.452 6.452 23 C -0.157 4.157 24 C -0.147 4.147 25 C -0.251 4.251 26 C -0.063 4.063 27 O -0.058 6.058 28 C 0.003 3.997 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.172 0.828 43 H 0.201 0.799 44 H 0.272 0.728 45 H 0.115 0.885 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.144 -15.608 15.870 22.641 hybrid contribution 0.802 1.725 -0.372 1.938 sum 4.946 -13.883 15.498 21.387 Atomic orbital electron populations 1.70103 1.05886 1.25128 1.57862 1.25488 0.96390 1.00246 1.02606 0.85403 0.77441 0.80120 0.77888 1.21635 1.21057 1.20738 1.19091 0.90178 0.83989 1.42788 0.91955 1.44658 1.06585 1.01910 1.79943 1.21235 0.84303 0.92697 0.96266 1.22915 0.99659 0.96010 0.98888 1.22705 0.95266 0.96967 1.00545 1.21093 0.95083 0.86313 0.92406 0.96050 1.21731 0.97117 0.95291 0.97325 0.95273 1.21384 0.97018 1.01593 0.93450 1.21888 1.00553 0.96669 0.97438 1.22353 0.91195 0.97002 0.91383 1.48159 1.09491 1.66529 1.08655 1.17098 0.82292 0.76906 0.85638 1.90824 1.48966 1.54966 1.50401 1.21688 0.89971 1.16636 0.87420 1.22238 0.96877 0.99397 0.96206 1.22191 0.98574 1.09504 0.94855 1.25535 0.91832 0.98606 0.90339 1.84205 1.36661 1.69747 1.15156 1.21701 1.00086 0.97586 0.80339 0.94433 0.98094 0.95384 0.92250 0.89728 0.89253 0.89603 0.94319 0.90246 0.88656 0.94169 0.88627 0.86867 0.82819 0.79931 0.72762 0.88468 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 10.57 21.65 0.23 -56.08 16 2 C -0.05 -3.07 5.47 84.86 0.46 -2.61 16 3 Si 0.96 47.03 29.55 68.60 2.03 49.06 16 4 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 5 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 6 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 7 C -0.23 -13.13 9.76 84.03 0.82 -12.31 16 8 H 0.06 3.57 7.83 -2.91 -0.02 3.55 16 9 N -0.61 -30.64 2.47 -667.83 -1.65 -32.29 16 10 C 0.18 8.67 5.42 86.93 0.47 9.14 16 11 C -0.14 -4.81 7.10 32.06 0.23 -4.58 16 12 C -0.12 -3.66 5.21 31.78 0.17 -3.49 16 13 C 0.16 6.35 2.90 45.34 0.13 6.49 16 14 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 15 C -0.09 -3.46 2.13 -10.72 -0.02 -3.48 16 16 H 0.03 1.31 7.92 -2.39 -0.02 1.30 16 17 C -0.10 -3.30 4.71 30.62 0.14 -3.16 16 18 C -0.13 -3.53 6.08 30.67 0.19 -3.34 16 19 C 0.10 2.34 6.13 86.36 0.53 2.87 16 20 N -0.60 -17.50 2.97 -823.65 -2.45 -19.94 16 21 C 0.59 18.94 7.65 86.44 0.66 19.60 16 22 O -0.57 -22.18 16.29 -4.33 -0.07 -22.25 16 23 C -0.11 -2.70 6.78 24.07 0.16 -2.54 16 24 C -0.13 -2.78 10.63 22.39 0.24 -2.55 16 25 C -0.23 -3.26 10.87 22.07 0.24 -3.02 16 26 C 0.01 0.06 12.08 67.10 0.81 0.87 16 27 O -0.16 -3.05 7.22 -5.06 -0.04 -3.09 16 28 C 0.13 3.88 5.62 86.36 0.49 4.37 16 29 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 31 H 0.03 1.55 6.93 -2.38 -0.02 1.53 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.06 16 33 H 0.08 2.52 8.14 -2.39 -0.02 2.51 16 34 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.09 2.40 5.49 -2.39 -0.01 2.38 16 36 H 0.04 1.70 7.66 -2.39 -0.02 1.68 16 37 H 0.08 2.32 5.95 -2.39 -0.01 2.31 16 38 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.11 2.35 4.17 -26.09 -0.11 2.25 16 42 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 43 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 44 H 0.26 0.21 8.06 -2.91 -0.02 0.18 16 45 H 0.10 2.47 7.22 -2.39 -0.02 2.46 16 46 H 0.07 2.51 7.00 -2.39 -0.02 2.49 16 Total: -1.00 -74.55 356.63 4.65 -69.90 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.88 Total: 12.42 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 5.72 Total: 2.27 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -3.87 Total: -108.31 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.11 Total: -25.34 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -74.55 4.65 -69.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963208899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.901 kcal (2) G-P(sol) polarization free energy of solvation -74.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds