Wall clock time and date at job start Tue Mar 31 2020 12:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47032 * 240.00311 * 3 2 1 5 5 H 1.48503 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47198 * 120.00272 * 3 2 1 7 7 C 1.38815 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64738 * 14.69584 * 9 7 2 11 11 C 1.54909 * 104.82809 * 155.83938 * 10 9 7 12 12 C 1.55394 * 101.66795 * 36.92707 * 11 10 9 13 13 C 1.47019 * 125.65001 * 194.66467 * 9 7 2 14 14 H 1.09004 * 109.87774 * 300.66672 * 13 9 7 15 15 C 1.53008 * 109.88388 * 61.67005 * 13 9 7 16 16 H 1.09000 * 109.52259 * 297.22030 * 15 13 9 17 17 C 1.53038 * 109.49549 * 177.13752 * 15 13 9 18 18 C 1.53040 * 109.53625 * 178.68581 * 17 15 13 19 19 C 1.53190 * 109.31297 * 61.36127 * 18 17 15 20 20 N 1.46922 * 108.77981 * 305.36803 * 19 18 17 21 21 C 1.34782 * 120.63163 * 233.63113 * 20 19 18 22 22 O 1.21691 * 119.99951 * 186.10814 * 21 20 19 23 23 C 1.46652 * 119.99888 * 6.10739 * 21 20 19 24 24 C 1.36542 * 125.98909 * 187.35426 * 23 21 20 25 25 C 1.40361 * 106.71034 * 179.90732 * 24 23 21 26 26 C 1.35132 * 107.11359 * 0.35770 * 25 24 23 27 27 O 1.33929 * 108.76986 * 359.77751 * 26 25 24 28 28 C 1.46929 * 118.74024 * 53.60616 * 20 19 18 29 29 H 0.97008 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08992 * 110.37162 * 274.67839 * 10 9 7 31 31 H 1.09002 * 110.36616 * 36.89487 * 10 9 7 32 32 H 1.09007 * 111.00385 * 155.08644 * 11 10 9 33 33 H 1.09001 * 111.00540 * 278.93579 * 11 10 9 34 34 H 1.09001 * 110.85767 * 206.29552 * 12 11 10 35 35 H 1.09008 * 110.69644 * 82.94950 * 12 11 10 36 36 H 1.09004 * 109.45848 * 298.70475 * 17 15 13 37 37 H 1.09003 * 109.46250 * 58.66590 * 17 15 13 38 38 H 1.08998 * 109.49772 * 301.41113 * 18 17 15 39 39 H 1.08997 * 109.52173 * 181.33038 * 18 17 15 40 40 H 1.09000 * 109.58698 * 185.57564 * 19 18 17 41 41 H 1.09007 * 109.58357 * 65.15372 * 19 18 17 42 42 H 1.08005 * 126.64392 * 0.03913 * 24 23 21 43 43 H 1.08000 * 126.44265 * 180.14765 * 25 24 23 44 44 H 1.07995 * 125.61559 * 179.77465 * 26 25 24 45 45 H 1.08994 * 109.58949 * 186.61150 * 28 20 19 46 46 H 1.08994 * 109.70135 * 66.24901 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1078 -2.5527 -0.3039 11 6 -0.2468 -4.0213 -0.7768 12 6 0.7673 -4.7473 0.1502 13 6 1.8981 -3.7081 0.3014 14 1 2.7032 -3.9318 -0.3986 15 6 2.4344 -3.7273 1.7343 16 1 3.2414 -3.0010 1.8309 17 6 2.9633 -5.1253 2.0629 18 6 3.5299 -5.1370 3.4845 19 6 2.4141 -4.7963 4.4774 20 7 1.8026 -3.5202 4.0820 21 6 1.6993 -2.5059 4.9636 22 8 1.0929 -1.4954 4.6601 23 6 2.3177 -2.6200 6.2884 24 6 2.1730 -1.7374 7.3201 25 6 2.9326 -2.2380 8.3890 26 6 3.5069 -3.3856 7.9656 27 8 3.1341 -3.6125 6.6994 28 6 1.3062 -3.3706 2.7072 29 1 -0.4850 0.8401 0.0004 30 1 -0.7068 -2.3839 0.5908 31 1 -0.4090 -1.8672 -1.0961 32 1 -1.2595 -4.3900 -0.6137 33 1 0.0408 -4.1237 -1.8232 34 1 1.1401 -5.6573 -0.3198 35 1 0.3152 -4.9687 1.1171 36 1 2.1501 -5.8476 1.9901 37 1 3.7496 -5.3916 1.3565 38 1 4.3266 -4.3975 3.5648 39 1 3.9278 -6.1264 3.7099 40 1 2.8322 -4.7060 5.4800 41 1 1.6597 -5.5829 4.4633 42 1 1.5859 -0.8309 7.3154 43 1 3.0407 -1.7886 9.3651 44 1 4.1592 -4.0160 8.5517 45 1 0.9934 -2.3398 2.5418 46 1 0.4605 -4.0394 2.5471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963208900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:08 Heat of formation + Delta-G solvation = 18.749700 kcal Electronic energy + Delta-G solvation = -28355.187797 eV Core-core repulsion = 24633.655214 eV Total energy + Delta-G solvation = -3721.532583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.78928 -39.81850 -38.11680 -36.40835 -33.39990 -32.82381 -32.20112 -31.07873 -29.89031 -29.19593 -26.72667 -25.47088 -24.45853 -22.83357 -22.48855 -21.80508 -20.98240 -20.18075 -19.65360 -18.36271 -17.55428 -16.72393 -16.49870 -16.25875 -15.79080 -14.86169 -14.68853 -14.44774 -14.19075 -14.05007 -13.78582 -13.44446 -13.21651 -13.00115 -12.90386 -12.79836 -12.46481 -12.11822 -11.85165 -11.56292 -11.45683 -11.23545 -10.89464 -10.74481 -10.71139 -10.52799 -10.13853 -10.11466 -10.02691 -9.91280 -9.79814 -9.70866 -9.54439 -9.48571 -8.78487 -8.47072 -8.23568 -6.67743 -5.64371 -2.99367 1.09766 2.30954 2.60151 3.29773 3.39954 3.48092 3.53580 3.54107 4.51349 4.58374 4.78914 4.86874 5.01141 5.08409 5.18970 5.38936 5.44138 5.44741 5.60854 5.63857 5.66569 5.71136 5.72443 5.78872 5.90433 5.96070 6.02945 6.09158 6.16444 6.23251 6.26257 6.27061 6.39916 6.42485 6.55635 6.64516 6.75280 6.78027 6.87849 6.94853 7.04229 7.13082 7.61850 7.66595 7.71701 7.89857 8.34395 8.38882 9.30488 9.91910 10.60002 11.47806 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.005055 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.037992 B = 5537.529237 C = 6971.622470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.071 0.929 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.150 4.150 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.035 0.965 15 C -0.106 4.106 16 H 0.070 0.930 17 C -0.116 4.116 18 C -0.131 4.131 19 C 0.091 3.909 20 N -0.600 5.600 21 C 0.591 3.409 22 O -0.505 6.505 23 C -0.064 4.064 24 C -0.129 4.129 25 C -0.221 4.221 26 C -0.028 4.028 27 O -0.157 6.157 28 C 0.126 3.874 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.206 0.794 45 H 0.115 0.885 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 -13.291 13.005 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.089 0.911 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.128 4.128 16 H 0.089 0.911 17 C -0.154 4.154 18 C -0.169 4.169 19 C -0.031 4.031 20 N -0.333 5.333 21 C 0.377 3.623 22 O -0.381 6.381 23 C -0.116 4.116 24 C -0.149 4.149 25 C -0.240 4.240 26 C -0.097 4.097 27 O -0.054 6.054 28 C 0.006 3.994 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.177 0.823 43 H 0.171 0.829 44 H 0.222 0.778 45 H 0.133 0.867 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.358 -12.730 12.597 18.694 hybrid contribution 0.628 0.965 0.398 1.218 sum 5.986 -11.765 12.995 18.523 Atomic orbital electron populations 1.69904 1.04905 1.25206 1.55940 1.24830 0.95575 0.97571 1.01521 0.86310 0.78680 0.83665 0.77773 1.21301 1.21617 1.21125 1.18818 0.90111 0.82274 1.44591 0.91144 1.44489 1.06107 1.01110 1.79995 1.21419 0.85204 0.89900 0.98702 1.23063 0.97399 0.99833 0.98575 1.22709 0.97232 0.97204 0.99484 1.20903 0.94127 0.87291 0.91666 0.94753 1.21974 0.98087 0.95341 0.97352 0.91122 1.21633 1.00323 0.98088 0.95367 1.21882 0.97858 1.01384 0.95756 1.22233 0.95706 0.85378 0.99805 1.48119 1.59375 1.13051 1.12712 1.16767 0.80387 0.83736 0.81365 1.90965 1.41748 1.29569 1.75841 1.22411 1.00773 0.91204 0.97167 1.21986 1.00871 1.00472 0.91620 1.21815 1.02948 0.98071 1.01210 1.24491 1.01898 0.99381 0.83887 1.84221 1.51584 1.42388 1.27170 1.21824 0.95403 1.05423 0.76748 0.93690 0.95723 0.91262 0.92596 0.92503 0.92516 0.91719 0.91947 0.92017 0.91712 0.91260 0.87887 0.91589 0.82323 0.82888 0.77766 0.86712 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.31 10.57 55.49 0.59 -26.72 16 2 C 0.00 0.07 5.47 -17.43 -0.10 -0.03 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -6.39 9.86 -15.06 -0.15 -6.54 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.59 -14.74 2.39 -162.57 -0.39 -15.13 16 10 C 0.17 4.16 5.42 -2.53 -0.01 4.15 16 11 C -0.15 -2.81 7.09 -24.45 -0.17 -2.99 16 12 C -0.13 -2.17 5.22 -24.77 -0.13 -2.30 16 13 C 0.17 3.36 2.95 -66.95 -0.20 3.16 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.11 -1.93 2.10 -90.50 -0.19 -2.12 16 16 H 0.07 1.48 8.06 -51.93 -0.42 1.06 16 17 C -0.12 -1.59 4.89 -26.69 -0.13 -1.72 16 18 C -0.13 -1.58 6.08 -26.61 -0.16 -1.75 16 19 C 0.09 1.18 6.32 -3.71 -0.02 1.16 16 20 N -0.60 -10.39 2.97 -174.32 -0.52 -10.91 16 21 C 0.59 11.25 7.65 -12.86 -0.10 11.15 16 22 O -0.50 -11.86 16.32 5.20 0.08 -11.78 16 23 C -0.06 -0.98 6.82 -36.80 -0.25 -1.23 16 24 C -0.13 -1.77 10.63 -39.40 -0.42 -2.18 16 25 C -0.22 -2.25 10.87 -39.89 -0.43 -2.69 16 26 C -0.03 -0.25 12.08 29.63 0.36 0.10 16 27 O -0.16 -1.93 7.15 4.98 0.04 -1.89 16 28 C 0.13 2.47 5.26 -3.71 -0.02 2.45 16 29 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.02 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.05 5.43 -51.92 -0.28 0.77 16 36 H 0.06 0.80 7.04 -51.93 -0.37 0.43 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 1.24 3.81 -54.96 -0.21 1.03 16 41 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.16 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.21 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.11 2.90 6.66 -51.93 -0.35 2.55 16 46 H 0.06 1.16 5.98 -51.93 -0.31 0.85 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -32.97 356.41 -8.89 -41.86 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.91 Total: 2.53 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -2.13 Total: -1.38 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.32 Total: -52.76 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.12 Total: -13.67 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.97 -8.89 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963208900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.605 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds