Wall clock time and date at job start Tue Mar 31 2020 12:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48505 * 109.47032 * 240.00311 * 3 2 1 5 5 H 1.48503 * 109.46972 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47198 * 120.00272 * 3 2 1 7 7 C 1.38815 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99693 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00130 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64738 * 14.69584 * 9 7 2 11 11 C 1.54909 * 104.82809 * 155.83938 * 10 9 7 12 12 C 1.55394 * 101.66795 * 36.92707 * 11 10 9 13 13 C 1.47019 * 125.65001 * 194.66467 * 9 7 2 14 14 H 1.09004 * 109.87774 * 300.66672 * 13 9 7 15 15 C 1.53008 * 109.88388 * 61.67005 * 13 9 7 16 16 H 1.09000 * 109.52259 * 297.22030 * 15 13 9 17 17 C 1.53038 * 109.49549 * 177.13752 * 15 13 9 18 18 C 1.53040 * 109.53625 * 178.68581 * 17 15 13 19 19 C 1.53190 * 109.31297 * 61.36127 * 18 17 15 20 20 N 1.46922 * 108.77981 * 305.36803 * 19 18 17 21 21 C 1.34782 * 120.63163 * 233.63113 * 20 19 18 22 22 O 1.21691 * 119.99951 * 186.10814 * 21 20 19 23 23 C 1.46652 * 119.99888 * 6.10739 * 21 20 19 24 24 C 1.36542 * 125.98909 * 187.35426 * 23 21 20 25 25 C 1.40361 * 106.71034 * 179.90732 * 24 23 21 26 26 C 1.35132 * 107.11359 * 0.35770 * 25 24 23 27 27 O 1.33929 * 108.76986 * 359.77751 * 26 25 24 28 28 C 1.46929 * 118.74024 * 53.60616 * 20 19 18 29 29 H 0.97008 * 120.00044 * 359.97438 * 1 2 3 30 30 H 1.08992 * 110.37162 * 274.67839 * 10 9 7 31 31 H 1.09002 * 110.36616 * 36.89487 * 10 9 7 32 32 H 1.09007 * 111.00385 * 155.08644 * 11 10 9 33 33 H 1.09001 * 111.00540 * 278.93579 * 11 10 9 34 34 H 1.09001 * 110.85767 * 206.29552 * 12 11 10 35 35 H 1.09008 * 110.69644 * 82.94950 * 12 11 10 36 36 H 1.09004 * 109.45848 * 298.70475 * 17 15 13 37 37 H 1.09003 * 109.46250 * 58.66590 * 17 15 13 38 38 H 1.08998 * 109.49772 * 301.41113 * 18 17 15 39 39 H 1.08997 * 109.52173 * 181.33038 * 18 17 15 40 40 H 1.09000 * 109.58698 * 185.57564 * 19 18 17 41 41 H 1.09007 * 109.58357 * 65.15372 * 19 18 17 42 42 H 1.08005 * 126.64392 * 0.03913 * 24 23 21 43 43 H 1.08000 * 126.44265 * 180.14765 * 25 24 23 44 44 H 1.07995 * 125.61559 * 179.77465 * 26 25 24 45 45 H 1.08994 * 109.58949 * 186.61150 * 28 20 19 46 46 H 1.08994 * 109.70135 * 66.24901 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1078 -2.5527 -0.3039 11 6 -0.2468 -4.0213 -0.7768 12 6 0.7673 -4.7473 0.1502 13 6 1.8981 -3.7081 0.3014 14 1 2.7032 -3.9318 -0.3986 15 6 2.4344 -3.7273 1.7343 16 1 3.2414 -3.0010 1.8309 17 6 2.9633 -5.1253 2.0629 18 6 3.5299 -5.1370 3.4845 19 6 2.4141 -4.7963 4.4774 20 7 1.8026 -3.5202 4.0820 21 6 1.6993 -2.5059 4.9636 22 8 1.0929 -1.4954 4.6601 23 6 2.3177 -2.6200 6.2884 24 6 2.1730 -1.7374 7.3201 25 6 2.9326 -2.2380 8.3890 26 6 3.5069 -3.3856 7.9656 27 8 3.1341 -3.6125 6.6994 28 6 1.3062 -3.3706 2.7072 29 1 -0.4850 0.8401 0.0004 30 1 -0.7068 -2.3839 0.5908 31 1 -0.4090 -1.8672 -1.0961 32 1 -1.2595 -4.3900 -0.6137 33 1 0.0408 -4.1237 -1.8232 34 1 1.1401 -5.6573 -0.3198 35 1 0.3152 -4.9687 1.1171 36 1 2.1501 -5.8476 1.9901 37 1 3.7496 -5.3916 1.3565 38 1 4.3266 -4.3975 3.5648 39 1 3.9278 -6.1264 3.7099 40 1 2.8322 -4.7060 5.4800 41 1 1.6597 -5.5829 4.4633 42 1 1.5859 -0.8309 7.3154 43 1 3.0407 -1.7886 9.3651 44 1 4.1592 -4.0160 8.5517 45 1 0.9934 -2.3398 2.5418 46 1 0.4605 -4.0394 2.5471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963208900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:07 Heat of formation + Delta-G solvation = -2.283598 kcal Electronic energy + Delta-G solvation = -28356.099869 eV Core-core repulsion = 24633.655214 eV Total energy + Delta-G solvation = -3722.444655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74828 -41.22839 -39.70803 -37.90257 -34.83969 -34.19695 -33.77931 -32.39206 -31.21087 -30.90026 -28.28913 -26.72001 -26.48279 -24.21082 -23.65458 -22.73050 -22.32954 -21.78397 -21.03730 -19.84995 -18.84931 -18.47334 -17.77499 -17.30636 -17.21778 -16.74746 -16.11376 -15.93254 -15.65108 -15.59097 -15.31753 -14.66314 -14.37014 -14.25344 -14.15102 -13.99222 -13.80423 -13.66754 -13.47652 -13.11406 -12.96551 -12.88444 -12.76732 -12.67915 -12.11732 -11.97446 -11.83647 -11.71862 -11.56445 -11.40015 -11.28872 -11.13453 -11.11884 -11.01594 -10.64359 -9.88880 -9.50267 -8.74906 -7.86209 -5.19708 0.00910 1.35967 1.41470 1.41929 1.45421 1.53843 2.04779 2.13003 2.47164 3.33467 3.47214 3.65493 3.86930 3.90764 3.95859 4.07346 4.09420 4.16061 4.17552 4.30551 4.32396 4.38550 4.46073 4.60591 4.73385 4.79015 4.84089 4.88835 4.90678 4.95600 4.98252 5.07327 5.10971 5.15009 5.23012 5.30240 5.35096 5.39694 5.48426 5.54726 5.58670 5.64274 5.69134 5.82240 5.87951 6.27344 6.33458 6.94855 7.13241 7.83314 8.49239 9.24951 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.005055 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.037992 B = 5537.529237 C = 6971.622470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.059 4.059 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.069 0.931 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.113 4.113 13 C 0.157 3.843 14 H 0.039 0.961 15 C -0.095 4.095 16 H 0.031 0.969 17 C -0.108 4.108 18 C -0.124 4.124 19 C 0.085 3.915 20 N -0.600 5.600 21 C 0.580 3.420 22 O -0.576 6.576 23 C -0.102 4.102 24 C -0.132 4.132 25 C -0.231 4.231 26 C 0.008 3.992 27 O -0.156 6.156 28 C 0.139 3.861 29 H 0.243 0.757 30 H -0.013 1.013 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.048 0.952 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.146 0.854 43 H 0.185 0.815 44 H 0.263 0.737 45 H 0.045 0.955 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 -17.708 14.939 24.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.087 0.913 9 N -0.336 5.336 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.150 4.150 13 C 0.051 3.949 14 H 0.057 0.943 15 C -0.117 4.117 16 H 0.049 0.951 17 C -0.146 4.146 18 C -0.162 4.162 19 C -0.035 4.035 20 N -0.331 5.331 21 C 0.369 3.631 22 O -0.458 6.458 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.249 4.249 26 C -0.060 4.060 27 O -0.053 6.053 28 C 0.017 3.983 29 H 0.053 0.947 30 H 0.005 0.995 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.107 0.893 42 H 0.164 0.836 43 H 0.202 0.798 44 H 0.279 0.721 45 H 0.064 0.936 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.902 -17.229 14.525 23.881 hybrid contribution -0.064 2.287 -0.060 2.289 sum 7.838 -14.942 14.465 22.225 Atomic orbital electron populations 1.70116 1.06105 1.24912 1.58021 1.25545 0.96375 1.00576 1.02728 0.85427 0.77518 0.80251 0.77867 1.19506 1.22010 1.21799 1.19083 0.90278 0.83858 1.42454 0.91342 1.44718 1.06441 1.02209 1.80191 1.21177 0.84574 0.93171 0.95867 1.22922 0.99666 0.95522 0.99338 1.22695 0.95107 0.97339 0.99891 1.21214 0.95428 0.85736 0.92548 0.94342 1.21793 0.96144 0.97862 0.95857 0.95052 1.21601 1.01482 0.94529 0.96938 1.21884 0.96831 1.03326 0.94158 1.22615 0.96571 0.83424 1.00932 1.48253 1.58905 1.14499 1.11428 1.17328 0.79781 0.83077 0.82877 1.90910 1.45041 1.32135 1.77681 1.21608 1.04008 0.93667 0.96050 1.22228 1.00568 0.99724 0.92751 1.22167 1.02533 0.98665 1.01554 1.25623 0.99523 0.98729 0.82120 1.84152 1.51007 1.41332 1.28814 1.21417 0.96462 1.01468 0.78948 0.94738 0.99482 0.95301 0.90121 0.91590 0.88158 0.90751 0.89632 0.90370 0.93272 0.86790 0.86475 0.89266 0.83632 0.79753 0.72144 0.93634 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.84 10.57 21.65 0.23 -60.61 16 2 C -0.06 -3.59 5.47 84.86 0.46 -3.12 16 3 Si 0.96 50.19 29.55 68.60 2.03 52.22 16 4 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 6 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 7 C -0.23 -13.40 9.86 84.03 0.83 -12.57 16 8 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 9 N -0.61 -31.91 2.39 -668.27 -1.60 -33.51 16 10 C 0.18 9.05 5.42 86.85 0.47 9.52 16 11 C -0.14 -4.95 7.09 32.07 0.23 -4.72 16 12 C -0.11 -3.50 5.22 31.86 0.17 -3.34 16 13 C 0.16 6.23 2.95 45.34 0.13 6.36 16 14 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 15 C -0.10 -3.49 2.10 -10.71 -0.02 -3.51 16 16 H 0.03 1.37 8.06 -2.39 -0.02 1.35 16 17 C -0.11 -2.58 4.89 30.62 0.15 -2.43 16 18 C -0.12 -2.54 6.08 30.67 0.19 -2.35 16 19 C 0.08 1.98 6.32 86.36 0.55 2.52 16 20 N -0.60 -21.37 2.97 -823.64 -2.45 -23.82 16 21 C 0.58 23.66 7.65 86.44 0.66 24.32 16 22 O -0.58 -30.15 16.32 -4.32 -0.07 -30.22 16 23 C -0.10 -3.17 6.82 24.07 0.16 -3.01 16 24 C -0.13 -3.64 10.63 22.39 0.24 -3.40 16 25 C -0.23 -3.98 10.87 22.07 0.24 -3.74 16 26 C 0.01 0.11 12.08 67.10 0.81 0.92 16 27 O -0.16 -3.41 7.15 -5.09 -0.04 -3.44 16 28 C 0.14 5.71 5.26 86.36 0.45 6.17 16 29 H 0.24 15.48 8.31 -92.70 -0.77 14.71 16 30 H -0.01 -0.74 8.06 -2.39 -0.02 -0.76 16 31 H 0.03 1.67 6.93 -2.39 -0.02 1.65 16 32 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.19 5.43 -2.38 -0.01 2.18 16 36 H 0.09 1.72 7.04 -2.38 -0.02 1.71 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 2.46 3.81 -50.32 -0.19 2.27 16 41 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.26 0.40 8.06 -2.91 -0.02 0.37 16 45 H 0.04 2.53 6.66 -2.39 -0.02 2.51 16 46 H 0.07 2.74 5.98 -2.39 -0.01 2.73 16 Total: -1.00 -84.77 356.41 4.62 -80.15 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.80 Total: 11.61 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.72 Total: 7.62 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -3.82 Total: -117.94 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.11 Total: -33.66 kcal Atomic # 14 Polarization: 50.19 SS G_CDS: 2.03 Total: 52.22 kcal Total: -84.77 4.62 -80.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963208900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.868 kcal (2) G-P(sol) polarization free energy of solvation -84.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds