Wall clock time and date at job start Tue Mar 31 2020 12:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99991 * 2 1 4 4 H 1.48505 * 109.46885 * 239.99178 * 3 2 1 5 5 H 1.48495 * 109.47525 * 119.99438 * 3 2 1 6 6 H 1.48498 * 109.47145 * 359.97438 * 3 2 1 7 7 C 1.38813 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99818 * 190.24449 * 7 2 1 9 9 N 1.36939 * 120.00246 * 10.25852 * 7 2 1 10 10 C 1.47421 * 125.64740 * 40.50954 * 9 7 2 11 11 C 1.55128 * 104.72157 * 155.82408 * 10 9 7 12 12 C 1.55166 * 101.48650 * 37.29503 * 11 10 9 13 13 C 1.47022 * 125.64488 * 220.82957 * 9 7 2 14 14 H 1.08998 * 109.87994 * 300.58311 * 13 9 7 15 15 C 1.53000 * 109.88781 * 61.59843 * 13 9 7 16 16 H 1.08995 * 109.49934 * 172.07335 * 15 13 9 17 17 C 1.53041 * 109.49346 * 292.13650 * 15 13 9 18 18 C 1.53039 * 109.53715 * 181.31548 * 17 15 13 19 19 C 1.53198 * 109.31214 * 298.63728 * 18 17 15 20 20 N 1.46924 * 108.77711 * 54.63150 * 19 18 17 21 21 C 1.34782 * 120.62988 * 126.41092 * 20 19 18 22 22 O 1.21612 * 120.00024 * 185.73414 * 21 20 19 23 23 C 1.47375 * 119.99769 * 5.74022 * 21 20 19 24 24 C 1.47026 * 127.18795 * 201.15993 * 23 21 20 25 25 C 1.34183 * 105.95098 * 179.89104 * 24 23 21 26 26 O 1.34207 * 109.12380 * 0.37441 * 25 24 23 27 27 C 1.33657 * 110.91153 * 359.74720 * 26 25 24 28 28 C 1.46927 * 118.73880 * 306.39392 * 20 19 18 29 29 H 0.97001 * 120.00195 * 186.86185 * 1 2 3 30 30 H 1.09004 * 110.36834 * 274.75150 * 10 9 7 31 31 H 1.08997 * 110.37061 * 37.07741 * 10 9 7 32 32 H 1.09000 * 111.19269 * 279.19431 * 11 10 9 33 33 H 1.09004 * 110.90938 * 155.27343 * 11 10 9 34 34 H 1.08996 * 110.72039 * 205.97448 * 12 11 10 35 35 H 1.09000 * 110.72003 * 82.69496 * 12 11 10 36 36 H 1.08999 * 109.46245 * 301.33470 * 17 15 13 37 37 H 1.08997 * 109.46178 * 61.31332 * 17 15 13 38 38 H 1.09006 * 109.49896 * 58.58500 * 18 17 15 39 39 H 1.08999 * 109.50161 * 178.65218 * 18 17 15 40 40 H 1.09001 * 109.58344 * 174.42335 * 19 18 17 41 41 H 1.08997 * 109.58313 * 294.70164 * 19 18 17 42 42 H 1.08002 * 127.02211 * 359.97438 * 24 23 21 43 43 H 1.07999 * 125.43342 * 180.12260 * 25 24 23 44 44 H 1.08003 * 125.80015 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.58398 * 293.81867 * 28 20 19 46 46 H 1.09004 * 109.58699 * 173.39407 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 3.1038 1.6965 1.2125 6 1 1.2852 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0773 -1.2096 0.1669 9 7 1.3419 -2.3787 -0.2101 10 6 0.2602 -2.5889 -1.1894 11 6 0.2842 -4.1121 -1.4824 12 6 0.6160 -4.6911 -0.0815 13 6 1.5800 -3.6397 0.5075 14 1 2.6124 -3.9585 0.3641 15 6 1.2961 -3.4512 1.9990 16 1 1.3371 -4.4173 2.5021 17 6 2.3449 -2.5153 2.6043 18 6 2.0813 -2.3522 4.1029 19 6 0.6982 -1.7263 4.3089 20 7 -0.3002 -2.5435 3.6060 21 6 -1.3831 -3.0141 4.2559 22 8 -2.1474 -3.7743 3.6930 23 6 -1.6410 -2.6073 5.6487 24 6 -2.4735 -3.3060 6.6389 25 6 -2.4095 -2.5703 7.7593 26 8 -1.6312 -1.4996 7.5384 27 6 -1.1620 -1.5009 6.2869 28 6 -0.0958 -2.8378 2.1811 29 1 -0.4850 -0.8340 0.1004 30 1 -0.6997 -2.2974 -0.7628 31 1 0.4583 -2.0247 -2.1006 32 1 1.0627 -4.3625 -2.2030 33 1 -0.6906 -4.4574 -1.8269 34 1 1.1091 -5.6590 -0.1712 35 1 -0.2854 -4.7710 0.5261 36 1 3.3384 -2.9378 2.4542 37 1 2.2869 -1.5418 2.1175 38 1 2.1144 -3.3285 4.5866 39 1 2.8425 -1.7047 4.5379 40 1 0.4644 -1.6990 5.3732 41 1 0.6923 -0.7130 3.9073 42 1 -3.0231 -4.2244 6.4944 43 1 -2.9084 -2.8008 8.6890 44 1 -0.5135 -0.7533 5.8545 45 1 -0.1672 -1.9160 1.6038 46 1 -0.8535 -3.5438 1.8414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963257851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:13 Heat of formation + Delta-G solvation = 15.614684 kcal Electronic energy + Delta-G solvation = -28639.821834 eV Core-core repulsion = 24918.153307 eV Total energy + Delta-G solvation = -3721.668528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.61530 -39.82718 -38.17341 -36.29307 -33.25429 -32.85512 -32.33399 -31.05311 -29.84708 -29.02040 -26.89706 -25.62201 -24.40503 -22.81803 -22.59504 -21.45617 -20.60549 -19.98367 -19.59802 -18.73349 -17.51281 -17.10907 -16.58014 -16.11701 -15.88112 -14.89155 -14.59787 -14.48461 -14.17224 -13.80909 -13.78417 -13.56187 -13.29546 -13.05195 -12.95961 -12.71297 -12.38148 -12.29540 -11.86754 -11.74843 -11.36656 -11.19871 -10.85129 -10.77761 -10.60803 -10.28540 -10.25781 -10.12322 -9.89305 -9.86426 -9.78186 -9.59182 -9.47772 -9.31674 -8.79681 -8.50981 -8.07767 -6.81662 -5.93379 -3.44925 1.38651 2.06047 2.84866 3.32509 3.40867 3.45195 3.53593 3.62699 4.49552 4.53569 4.66002 4.92233 5.03090 5.24322 5.28766 5.31895 5.34669 5.44354 5.53656 5.60538 5.63902 5.73688 5.79117 5.82669 5.88105 5.95662 6.05805 6.19696 6.22368 6.25779 6.30752 6.33822 6.41866 6.48258 6.60017 6.70426 6.73613 6.87170 6.90299 6.99140 7.02863 7.08670 7.13774 7.35664 7.80697 8.00781 8.50681 8.53074 8.99992 9.74092 10.43213 11.19484 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.004949 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.271515 B = 5656.321582 C = 6656.074215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.017 4.017 3 Si 1.066 2.934 4 H -0.292 1.292 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.320 4.320 8 H 0.052 0.948 9 N -0.591 5.591 10 C 0.135 3.865 11 C -0.137 4.137 12 C -0.132 4.132 13 C 0.162 3.838 14 H 0.036 0.964 15 C -0.097 4.097 16 H 0.047 0.953 17 C -0.124 4.124 18 C -0.130 4.130 19 C 0.084 3.916 20 N -0.595 5.595 21 C 0.580 3.420 22 O -0.547 6.547 23 C -0.224 4.224 24 C -0.167 4.167 25 C -0.045 4.045 26 O -0.178 6.178 27 C 0.003 3.997 28 C 0.117 3.883 29 H 0.273 0.727 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.157 0.843 43 H 0.207 0.793 44 H 0.225 0.775 45 H 0.107 0.893 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -4.571 12.253 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.221 4.221 3 Si 0.896 3.104 4 H -0.220 1.220 5 H -0.218 1.218 6 H -0.210 1.210 7 C -0.449 4.449 8 H 0.069 0.931 9 N -0.317 5.317 10 C 0.010 3.990 11 C -0.175 4.175 12 C -0.170 4.170 13 C 0.055 3.945 14 H 0.054 0.946 15 C -0.118 4.118 16 H 0.066 0.934 17 C -0.161 4.161 18 C -0.169 4.169 19 C -0.038 4.038 20 N -0.327 5.327 21 C 0.368 3.632 22 O -0.426 6.426 23 C -0.228 4.228 24 C -0.187 4.187 25 C -0.111 4.111 26 O -0.073 6.073 27 C -0.066 4.066 28 C -0.003 4.003 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.175 0.825 43 H 0.223 0.777 44 H 0.240 0.760 45 H 0.125 0.875 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.182 -3.012 12.059 12.431 hybrid contribution 0.218 -1.910 0.029 1.922 sum 0.036 -4.921 12.088 13.052 Atomic orbital electron populations 1.70814 1.06411 1.31150 1.47369 1.26078 0.96964 1.01385 0.97627 0.83496 0.74633 0.75975 0.76308 1.21951 1.21793 1.21047 1.19502 0.91095 0.84046 1.50258 0.93061 1.44434 1.42301 1.07034 1.37961 1.21738 0.92704 0.91591 0.92977 1.22817 1.00062 0.98297 0.96350 1.22659 0.99689 0.97635 0.96996 1.21063 0.95976 0.88010 0.89421 0.94630 1.21748 0.94861 0.97083 0.98083 0.93424 1.21850 0.97197 1.04073 0.92999 1.21908 0.95572 1.00322 0.99066 1.22360 0.88948 0.95463 0.97049 1.47988 1.21553 1.51215 1.11899 1.17303 0.81200 0.80382 0.84290 1.90742 1.47498 1.36081 1.68300 1.21649 1.05682 0.99128 0.96365 1.22776 1.02003 1.02247 0.91681 1.23898 0.98619 0.87776 1.00835 1.83811 1.51653 1.41711 1.30131 1.25212 0.99201 1.00110 0.82078 1.21987 0.96706 1.03310 0.78339 0.91265 0.95287 0.93923 0.92122 0.92311 0.92356 0.91529 0.93262 0.87077 0.92736 0.91270 0.89472 0.90463 0.82536 0.77678 0.75953 0.87544 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.63 13.01 55.49 0.72 -24.90 16 2 C -0.02 -0.44 5.36 -17.43 -0.09 -0.53 16 3 Si 1.07 23.65 29.93 -169.99 -5.09 18.56 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.32 -8.06 6.68 -15.06 -0.10 -8.16 16 8 H 0.05 1.32 7.75 -52.48 -0.41 0.91 16 9 N -0.59 -13.74 1.74 -162.43 -0.28 -14.02 16 10 C 0.14 3.04 5.86 -2.41 -0.01 3.02 16 11 C -0.14 -2.51 7.10 -24.46 -0.17 -2.68 16 12 C -0.13 -2.37 6.31 -24.89 -0.16 -2.53 16 13 C 0.16 3.27 2.94 -66.95 -0.20 3.08 16 14 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 15 C -0.10 -1.85 2.11 -90.50 -0.19 -2.04 16 16 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.12 -2.26 4.78 -26.69 -0.13 -2.39 16 18 C -0.13 -1.94 6.08 -26.61 -0.16 -2.11 16 19 C 0.08 1.27 5.25 -3.71 -0.02 1.25 16 20 N -0.60 -10.96 2.97 -174.05 -0.52 -11.48 16 21 C 0.58 11.02 7.67 -12.54 -0.10 10.92 16 22 O -0.55 -12.22 16.45 5.27 0.09 -12.13 16 23 C -0.22 -3.42 5.95 -103.28 -0.61 -4.04 16 24 C -0.17 -2.16 11.08 -37.45 -0.41 -2.57 16 25 C -0.05 -0.46 12.03 29.30 0.35 -0.10 16 26 O -0.18 -2.03 10.52 7.66 0.08 -1.95 16 27 C 0.00 0.04 9.86 30.07 0.30 0.34 16 28 C 0.12 2.44 5.30 -3.71 -0.02 2.42 16 29 H 0.27 7.66 3.81 -40.82 -0.16 7.51 16 30 H 0.03 0.71 6.43 -51.93 -0.33 0.38 16 31 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.24 6.21 -51.93 -0.32 0.91 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 2.39 5.25 -51.93 -0.27 2.11 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.06 3.64 -51.93 -0.19 0.87 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.21 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.22 2.27 5.69 -52.48 -0.30 1.97 16 45 H 0.11 2.56 4.97 -51.93 -0.26 2.30 16 46 H 0.08 1.69 5.45 -51.93 -0.28 1.41 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -31.00 347.03 -7.89 -38.89 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.39 Total: 7.93 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.73 Total: -6.13 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.08 Total: -50.41 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.17 Total: -14.09 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -5.09 Total: 18.56 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.00 -7.89 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.506 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds