Wall clock time and date at job start Tue Mar 31 2020 12:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 119.99991 * 2 1 4 4 H 1.48505 * 109.46885 * 239.99178 * 3 2 1 5 5 H 1.48495 * 109.47525 * 119.99438 * 3 2 1 6 6 H 1.48498 * 109.47145 * 359.97438 * 3 2 1 7 7 C 1.38813 * 119.99749 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99818 * 190.24449 * 7 2 1 9 9 N 1.36939 * 120.00246 * 10.25852 * 7 2 1 10 10 C 1.47421 * 125.64740 * 40.50954 * 9 7 2 11 11 C 1.55128 * 104.72157 * 155.82408 * 10 9 7 12 12 C 1.55166 * 101.48650 * 37.29503 * 11 10 9 13 13 C 1.47022 * 125.64488 * 220.82957 * 9 7 2 14 14 H 1.08998 * 109.87994 * 300.58311 * 13 9 7 15 15 C 1.53000 * 109.88781 * 61.59843 * 13 9 7 16 16 H 1.08995 * 109.49934 * 172.07335 * 15 13 9 17 17 C 1.53041 * 109.49346 * 292.13650 * 15 13 9 18 18 C 1.53039 * 109.53715 * 181.31548 * 17 15 13 19 19 C 1.53198 * 109.31214 * 298.63728 * 18 17 15 20 20 N 1.46924 * 108.77711 * 54.63150 * 19 18 17 21 21 C 1.34782 * 120.62988 * 126.41092 * 20 19 18 22 22 O 1.21612 * 120.00024 * 185.73414 * 21 20 19 23 23 C 1.47375 * 119.99769 * 5.74022 * 21 20 19 24 24 C 1.47026 * 127.18795 * 201.15993 * 23 21 20 25 25 C 1.34183 * 105.95098 * 179.89104 * 24 23 21 26 26 O 1.34207 * 109.12380 * 0.37441 * 25 24 23 27 27 C 1.33657 * 110.91153 * 359.74720 * 26 25 24 28 28 C 1.46927 * 118.73880 * 306.39392 * 20 19 18 29 29 H 0.97001 * 120.00195 * 186.86185 * 1 2 3 30 30 H 1.09004 * 110.36834 * 274.75150 * 10 9 7 31 31 H 1.08997 * 110.37061 * 37.07741 * 10 9 7 32 32 H 1.09000 * 111.19269 * 279.19431 * 11 10 9 33 33 H 1.09004 * 110.90938 * 155.27343 * 11 10 9 34 34 H 1.08996 * 110.72039 * 205.97448 * 12 11 10 35 35 H 1.09000 * 110.72003 * 82.69496 * 12 11 10 36 36 H 1.08999 * 109.46245 * 301.33470 * 17 15 13 37 37 H 1.08997 * 109.46178 * 61.31332 * 17 15 13 38 38 H 1.09006 * 109.49896 * 58.58500 * 18 17 15 39 39 H 1.08999 * 109.50161 * 178.65218 * 18 17 15 40 40 H 1.09001 * 109.58344 * 174.42335 * 19 18 17 41 41 H 1.08997 * 109.58313 * 294.70164 * 19 18 17 42 42 H 1.08002 * 127.02211 * 359.97438 * 24 23 21 43 43 H 1.07999 * 125.43342 * 180.12260 * 25 24 23 44 44 H 1.08003 * 125.80015 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.58398 * 293.81867 * 28 20 19 46 46 H 1.09004 * 109.58699 * 173.39407 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 3.1038 1.6965 1.2125 6 1 1.2852 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0773 -1.2096 0.1669 9 7 1.3419 -2.3787 -0.2101 10 6 0.2602 -2.5889 -1.1894 11 6 0.2842 -4.1121 -1.4824 12 6 0.6160 -4.6911 -0.0815 13 6 1.5800 -3.6397 0.5075 14 1 2.6124 -3.9585 0.3641 15 6 1.2961 -3.4512 1.9990 16 1 1.3371 -4.4173 2.5021 17 6 2.3449 -2.5153 2.6043 18 6 2.0813 -2.3522 4.1029 19 6 0.6982 -1.7263 4.3089 20 7 -0.3002 -2.5435 3.6060 21 6 -1.3831 -3.0141 4.2559 22 8 -2.1474 -3.7743 3.6930 23 6 -1.6410 -2.6073 5.6487 24 6 -2.4735 -3.3060 6.6389 25 6 -2.4095 -2.5703 7.7593 26 8 -1.6312 -1.4996 7.5384 27 6 -1.1620 -1.5009 6.2869 28 6 -0.0958 -2.8378 2.1811 29 1 -0.4850 -0.8340 0.1004 30 1 -0.6997 -2.2974 -0.7628 31 1 0.4583 -2.0247 -2.1006 32 1 1.0627 -4.3625 -2.2030 33 1 -0.6906 -4.4574 -1.8269 34 1 1.1091 -5.6590 -0.1712 35 1 -0.2854 -4.7710 0.5261 36 1 3.3384 -2.9378 2.4542 37 1 2.2869 -1.5418 2.1175 38 1 2.1144 -3.3285 4.5866 39 1 2.8425 -1.7047 4.5379 40 1 0.4644 -1.6990 5.3732 41 1 0.6923 -0.7130 3.9073 42 1 -3.0231 -4.2244 6.4944 43 1 -2.9084 -2.8008 8.6890 44 1 -0.5135 -0.7533 5.8545 45 1 -0.1672 -1.9160 1.6038 46 1 -0.8535 -3.5438 1.8414 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963257851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:12 Heat of formation + Delta-G solvation = -1.966594 kcal Electronic energy + Delta-G solvation = -28640.584216 eV Core-core repulsion = 24918.153307 eV Total energy + Delta-G solvation = -3722.430909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.58242 -41.31323 -39.78701 -37.81132 -34.81961 -34.49673 -33.54566 -32.44270 -31.05768 -30.72381 -28.48110 -27.04541 -26.25390 -24.24640 -23.88181 -22.43576 -22.19307 -21.48515 -20.94930 -20.29417 -19.24526 -18.42168 -17.80371 -17.38400 -17.12168 -16.38694 -16.07757 -15.91023 -15.64549 -15.57894 -15.25769 -15.06261 -14.85013 -14.48480 -14.17309 -13.87142 -13.86913 -13.48052 -13.41330 -13.35488 -12.96538 -12.79120 -12.54345 -12.41901 -12.10071 -11.92390 -11.86714 -11.73644 -11.53266 -11.36568 -11.24749 -11.12605 -11.00420 -10.81441 -10.41961 -9.78806 -9.59757 -8.78407 -7.93726 -5.46683 0.29655 1.10982 1.60848 1.67453 1.81235 1.85276 2.08847 2.19351 2.67479 3.37221 3.43566 3.54050 3.70203 3.75901 3.85029 3.95587 3.99526 4.06967 4.16723 4.20275 4.25197 4.36802 4.42895 4.53064 4.60431 4.66193 4.69750 4.76226 4.80035 4.87730 4.90025 4.95923 5.02430 5.09090 5.14046 5.16083 5.22142 5.29173 5.31135 5.37099 5.48144 5.53735 5.79479 5.95455 5.98760 6.39357 6.53351 7.04915 7.06341 7.78526 8.49237 9.15862 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013802 B = 0.004949 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.271515 B = 5656.321582 C = 6656.074215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 1.108 2.892 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.298 1.298 7 C -0.311 4.311 8 H 0.048 0.952 9 N -0.603 5.603 10 C 0.137 3.863 11 C -0.123 4.123 12 C -0.124 4.124 13 C 0.156 3.844 14 H 0.038 0.962 15 C -0.089 4.089 16 H 0.057 0.943 17 C -0.121 4.121 18 C -0.123 4.123 19 C 0.081 3.919 20 N -0.599 5.599 21 C 0.573 3.427 22 O -0.595 6.595 23 C -0.261 4.261 24 C -0.199 4.199 25 C -0.013 4.013 26 O -0.172 6.172 27 C 0.022 3.978 28 C 0.129 3.871 29 H 0.261 0.739 30 H 0.000 1.000 31 H 0.017 0.983 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.068 0.932 42 H 0.156 0.844 43 H 0.256 0.744 44 H 0.244 0.756 45 H 0.072 0.928 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -4.905 15.018 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.259 4.259 3 Si 0.934 3.066 4 H -0.212 1.212 5 H -0.192 1.192 6 H -0.225 1.225 7 C -0.440 4.440 8 H 0.066 0.934 9 N -0.329 5.329 10 C 0.012 3.988 11 C -0.161 4.161 12 C -0.162 4.162 13 C 0.050 3.950 14 H 0.056 0.944 15 C -0.110 4.110 16 H 0.075 0.925 17 C -0.158 4.158 18 C -0.161 4.161 19 C -0.040 4.040 20 N -0.329 5.329 21 C 0.364 3.636 22 O -0.478 6.478 23 C -0.265 4.265 24 C -0.218 4.218 25 C -0.078 4.078 26 O -0.066 6.066 27 C -0.047 4.047 28 C 0.007 3.993 29 H 0.074 0.926 30 H 0.018 0.982 31 H 0.036 0.964 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.174 0.826 43 H 0.271 0.729 44 H 0.259 0.741 45 H 0.090 0.910 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.287 -3.356 14.851 15.280 hybrid contribution -0.250 -1.838 -0.804 2.022 sum 1.037 -5.194 14.047 15.013 Atomic orbital electron populations 1.70894 1.07536 1.30578 1.50312 1.27166 0.96844 1.04333 0.97571 0.82943 0.73773 0.72450 0.77479 1.21219 1.19159 1.22480 1.19605 0.90928 0.84908 1.48587 0.93429 1.44592 1.41901 1.07557 1.38832 1.21605 0.91256 0.94425 0.91526 1.22736 1.01725 0.94665 0.97006 1.22630 0.99032 0.98374 0.96164 1.21209 0.96545 0.87189 0.90069 0.94405 1.21662 0.94178 0.97621 0.97571 0.92456 1.21727 0.97139 1.01767 0.95202 1.21882 0.95985 1.01616 0.96626 1.22606 0.88423 0.94409 0.98604 1.48082 1.22326 1.51447 1.11062 1.17913 0.80423 0.79582 0.85702 1.90696 1.48947 1.38396 1.69730 1.21524 1.08539 1.01496 0.94957 1.22934 1.03193 1.03359 0.92359 1.24713 0.96237 0.85587 1.01286 1.83869 1.51469 1.42026 1.29242 1.25388 0.98249 0.99030 0.82070 1.21582 0.97015 1.00962 0.79753 0.92563 0.98202 0.96433 0.90705 0.90372 0.89194 0.92515 0.92463 0.90385 0.91649 0.88289 0.86040 0.91372 0.82637 0.72866 0.74091 0.91035 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.71 13.01 21.65 0.28 -55.42 16 2 C -0.06 -3.28 5.36 84.86 0.45 -2.82 16 3 Si 1.11 48.35 29.93 68.60 2.05 50.41 16 4 H -0.29 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.31 -16.02 6.68 84.03 0.56 -15.46 16 8 H 0.05 2.47 7.75 -2.91 -0.02 2.45 16 9 N -0.60 -28.82 1.74 -667.82 -1.16 -29.98 16 10 C 0.14 6.46 5.86 86.93 0.51 6.97 16 11 C -0.12 -4.47 7.10 32.07 0.23 -4.24 16 12 C -0.12 -4.40 6.31 31.79 0.20 -4.20 16 13 C 0.16 6.31 2.94 45.34 0.13 6.44 16 14 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.09 -3.43 2.11 -10.72 -0.02 -3.46 16 16 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.12 -4.31 4.78 30.62 0.15 -4.16 16 18 C -0.12 -3.39 6.08 30.67 0.19 -3.20 16 19 C 0.08 2.34 5.25 86.37 0.45 2.79 16 20 N -0.60 -22.46 2.97 -822.82 -2.45 -24.90 16 21 C 0.57 22.33 7.67 86.65 0.66 22.99 16 22 O -0.59 -27.97 16.45 -4.07 -0.07 -28.03 16 23 C -0.26 -7.76 5.95 -18.99 -0.11 -7.87 16 24 C -0.20 -4.83 11.08 23.65 0.26 -4.57 16 25 C -0.01 -0.21 12.03 66.89 0.80 0.60 16 26 O -0.17 -3.27 10.52 4.51 0.05 -3.23 16 27 C 0.02 0.50 9.86 67.39 0.66 1.16 16 28 C 0.13 5.60 5.30 86.36 0.46 6.06 16 29 H 0.26 15.65 3.81 -92.71 -0.35 15.30 16 30 H 0.00 0.01 6.43 -2.39 -0.02 0.00 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.06 2.13 6.21 -2.39 -0.01 2.12 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 3.36 5.25 -2.39 -0.01 3.34 16 38 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.12 2.65 3.64 -2.39 -0.01 2.64 16 41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.26 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.24 4.23 5.69 -2.91 -0.02 4.22 16 45 H 0.07 3.66 4.97 -2.39 -0.01 3.65 16 46 H 0.05 2.48 5.45 -2.39 -0.01 2.47 16 Total: -1.00 -72.60 347.03 5.71 -66.89 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.41 Total: 27.23 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: 5.59 Total: -2.97 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.33 Total: -110.31 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.02 Total: -31.26 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.05 Total: 50.41 kcal Total: -72.60 5.71 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.926 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds