Wall clock time and date at job start Tue Mar 31 2020 12:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48501 * 109.47049 * 269.99731 * 3 2 1 5 5 H 1.48507 * 109.47324 * 29.99765 * 3 2 1 6 6 H 1.48500 * 109.47341 * 149.99688 * 3 2 1 7 7 C 1.38817 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99388 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.47418 * 125.65109 * 351.03632 * 9 7 2 11 11 C 1.54908 * 104.93068 * 204.05282 * 10 9 7 12 12 C 1.55273 * 101.52896 * 323.12924 * 11 10 9 13 13 C 1.47022 * 125.64683 * 171.01663 * 9 7 2 14 14 H 1.09002 * 109.88567 * 59.53726 * 13 9 7 15 15 C 1.53004 * 109.88089 * 298.53253 * 13 9 7 16 16 H 1.08996 * 109.49766 * 60.53683 * 15 13 9 17 17 C 1.53045 * 109.49645 * 300.43770 * 15 13 9 18 18 C 1.53042 * 109.53464 * 178.68046 * 17 15 13 19 19 C 1.53188 * 109.31097 * 61.37239 * 18 17 15 20 20 N 1.46926 * 108.77531 * 305.35723 * 19 18 17 21 21 C 1.34780 * 120.63395 * 233.63464 * 20 19 18 22 22 O 1.21614 * 119.99977 * 180.91935 * 21 20 19 23 23 C 1.47374 * 119.99837 * 0.91313 * 21 20 19 24 24 C 1.47024 * 127.19330 * 152.83595 * 23 21 20 25 25 C 1.34169 * 105.95448 * 179.89536 * 24 23 21 26 26 O 1.34212 * 109.12982 * 0.37829 * 25 24 23 27 27 C 1.33657 * 110.90359 * 359.74709 * 26 25 24 28 28 C 1.46930 * 118.73523 * 53.60989 * 20 19 18 29 29 H 0.97004 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.37260 * 322.94802 * 10 9 7 31 31 H 1.09003 * 110.36685 * 85.15995 * 10 9 7 32 32 H 1.08995 * 111.00450 * 81.12031 * 11 10 9 33 33 H 1.09003 * 111.00715 * 204.97099 * 11 10 9 34 34 H 1.09003 * 110.62339 * 277.00908 * 12 11 10 35 35 H 1.08998 * 110.76064 * 153.77586 * 12 11 10 36 36 H 1.09000 * 109.46157 * 298.70362 * 17 15 13 37 37 H 1.09001 * 109.45883 * 58.66692 * 17 15 13 38 38 H 1.09001 * 109.50119 * 301.41250 * 18 17 15 39 39 H 1.09006 * 109.52173 * 181.33355 * 18 17 15 40 40 H 1.09003 * 109.58617 * 185.57580 * 19 18 17 41 41 H 1.08997 * 109.59154 * 65.14537 * 19 18 17 42 42 H 1.07997 * 127.01500 * 0.02562 * 24 23 21 43 43 H 1.08010 * 125.43467 * 180.12994 * 25 24 23 44 44 H 1.08001 * 125.79625 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.58379 * 186.60299 * 28 20 19 46 46 H 1.09000 * 109.70190 * 66.25183 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1289 -2.5404 0.1866 11 6 -0.3144 -3.9844 0.7159 12 6 0.7745 -4.7502 -0.0834 13 6 1.9191 -3.7202 -0.1855 14 1 2.6582 -3.9088 0.5932 15 6 2.5806 -3.8074 -1.5624 16 1 3.3687 -3.0580 -1.6354 17 6 1.5330 -3.5556 -2.6493 18 6 2.2001 -3.6100 -4.0255 19 6 2.7980 -5.0034 -4.2439 20 7 3.6980 -5.3126 -3.1245 21 6 4.9720 -5.6892 -3.3515 22 8 5.7022 -5.9586 -2.4169 23 6 5.4803 -5.7746 -4.7322 24 6 6.8723 -5.6165 -5.1782 25 6 6.8535 -5.7783 -6.5099 26 8 5.5924 -6.0086 -6.9072 27 6 4.7567 -6.0109 -5.8642 28 6 3.1828 -5.2030 -1.7529 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4957 -1.8188 0.9166 31 1 -0.6482 -2.4150 -0.7635 32 1 -0.1202 -4.0358 1.7872 33 1 -1.3103 -4.3612 0.4825 34 1 0.4067 -5.0175 -1.0741 35 1 1.1009 -5.6368 0.4602 36 1 0.7581 -4.3199 -2.5908 37 1 1.0853 -2.5728 -2.5014 38 1 2.9917 -2.8624 -4.0760 39 1 1.4584 -3.4072 -4.7982 40 1 3.3589 -5.0180 -5.1784 41 1 1.9976 -5.7423 -4.2841 42 1 7.7342 -5.4138 -4.5597 43 1 7.7151 -5.7270 -7.1592 44 1 3.6897 -6.1719 -5.9099 45 1 3.9976 -5.3493 -1.0437 46 1 2.4144 -5.9582 -1.5875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963257852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:16 Heat of formation + Delta-G solvation = 22.450055 kcal Electronic energy + Delta-G solvation = -27821.956490 eV Core-core repulsion = 24100.584366 eV Total energy + Delta-G solvation = -3721.372124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.78346 -40.04075 -38.23584 -36.40845 -33.47308 -32.67088 -32.19727 -31.38273 -29.98025 -29.26949 -26.65957 -25.82045 -24.53670 -23.00895 -22.64488 -21.63452 -21.12341 -20.22482 -19.60328 -18.39182 -17.56196 -16.84780 -16.64377 -16.25338 -15.70555 -15.16422 -14.87357 -14.75394 -14.45864 -14.10851 -13.85357 -13.67736 -13.29967 -13.08350 -12.94570 -12.70163 -12.49540 -12.11795 -11.99238 -11.82895 -11.55624 -11.13006 -10.89365 -10.83377 -10.69956 -10.39007 -10.25387 -10.10867 -10.04661 -9.90870 -9.86658 -9.64816 -9.58268 -9.42225 -8.96235 -8.58248 -8.45385 -6.78308 -5.69678 -3.04866 1.20861 1.91910 2.66416 2.98197 3.29745 3.39941 3.46272 3.47453 4.34444 4.43785 4.50496 4.73784 4.83080 5.10572 5.16731 5.23183 5.27282 5.40765 5.44840 5.46351 5.57449 5.67573 5.73356 5.74022 5.78299 5.81954 5.93456 5.98193 6.05512 6.08190 6.21032 6.28951 6.37992 6.46290 6.56216 6.62825 6.70511 6.73679 6.79668 6.97716 7.03568 7.15258 7.46790 7.59932 7.64103 7.85545 8.22907 8.32785 9.23876 9.84980 10.52169 11.39901 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003738 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.790722 B = 7489.665877 C = 8276.832260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.169 3.831 11 C -0.149 4.149 12 C -0.130 4.130 13 C 0.168 3.832 14 H 0.033 0.967 15 C -0.105 4.105 16 H 0.071 0.929 17 C -0.105 4.105 18 C -0.134 4.134 19 C 0.081 3.919 20 N -0.599 5.599 21 C 0.583 3.417 22 O -0.540 6.540 23 C -0.223 4.223 24 C -0.167 4.167 25 C -0.041 4.041 26 O -0.177 6.177 27 C 0.000 4.000 28 C 0.117 3.883 29 H 0.251 0.749 30 H 0.081 0.919 31 H 0.019 0.981 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.158 0.842 43 H 0.208 0.792 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.278 -13.153 -12.861 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.092 0.908 9 N -0.315 5.315 10 C 0.044 3.956 11 C -0.188 4.188 12 C -0.168 4.168 13 C 0.059 3.941 14 H 0.051 0.949 15 C -0.126 4.126 16 H 0.089 0.911 17 C -0.143 4.143 18 C -0.172 4.172 19 C -0.041 4.041 20 N -0.332 5.332 21 C 0.371 3.629 22 O -0.418 6.418 23 C -0.228 4.228 24 C -0.187 4.187 25 C -0.107 4.107 26 O -0.072 6.072 27 C -0.069 4.069 28 C -0.005 4.005 29 H 0.062 0.938 30 H 0.099 0.901 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.176 0.824 43 H 0.225 0.775 44 H 0.240 0.760 45 H 0.106 0.894 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.528 -13.086 -12.614 18.998 hybrid contribution 0.533 1.062 0.073 1.191 sum 6.061 -12.024 -12.541 18.401 Atomic orbital electron populations 1.69922 1.04821 1.24848 1.57188 1.24767 0.95624 0.97499 1.02368 0.86192 0.78731 0.83792 0.77525 1.21726 1.21746 1.20735 1.18982 0.90351 0.82384 1.43124 0.90835 1.44491 1.03382 1.00057 1.83543 1.21536 0.84534 0.90820 0.98664 1.23030 0.96960 0.99655 0.99150 1.22718 0.96957 0.97181 0.99957 1.20863 0.93541 0.87037 0.92617 0.94886 1.21972 0.98229 0.94579 0.97866 0.91089 1.21495 0.97213 1.03726 0.91851 1.21935 1.00467 0.95564 0.99247 1.22464 0.93592 0.98125 0.89946 1.47994 1.10567 1.66391 1.08222 1.17332 0.81301 0.77081 0.87154 1.90775 1.56488 1.50211 1.44371 1.21586 0.94765 1.12316 0.94103 1.22788 0.96191 1.05154 0.94552 1.23934 0.85324 1.05817 0.95628 1.83816 1.17394 1.69663 1.36344 1.25082 0.95880 1.01986 0.83970 1.21828 0.98926 0.98215 0.81534 0.93849 0.90103 0.96343 0.92508 0.92623 0.91509 0.92588 0.92591 0.89449 0.91632 0.91137 0.88930 0.91081 0.82416 0.77546 0.76028 0.89401 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.36 55.49 0.57 -25.67 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.22 -5.92 9.84 -15.06 -0.15 -6.07 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.26 2.35 -162.58 -0.38 -14.64 16 10 C 0.17 3.95 5.54 -2.53 -0.01 3.93 16 11 C -0.15 -2.75 7.10 -24.52 -0.17 -2.92 16 12 C -0.13 -2.18 5.14 -24.83 -0.13 -2.31 16 13 C 0.17 3.32 2.93 -66.95 -0.20 3.12 16 14 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.10 -1.87 2.11 -90.50 -0.19 -2.06 16 16 H 0.07 1.47 8.00 -51.93 -0.42 1.06 16 17 C -0.11 -1.75 4.73 -26.69 -0.13 -1.87 16 18 C -0.13 -1.78 6.08 -26.61 -0.16 -1.95 16 19 C 0.08 0.89 5.51 -3.71 -0.02 0.87 16 20 N -0.60 -8.54 2.97 -174.05 -0.52 -9.05 16 21 C 0.58 9.16 7.68 -12.54 -0.10 9.06 16 22 O -0.54 -10.46 16.48 5.27 0.09 -10.37 16 23 C -0.22 -2.83 5.93 -103.28 -0.61 -3.44 16 24 C -0.17 -1.87 11.11 -37.46 -0.42 -2.28 16 25 C -0.04 -0.35 12.03 29.30 0.35 0.01 16 26 O -0.18 -1.66 10.52 7.65 0.08 -1.58 16 27 C 0.00 0.00 9.88 30.08 0.30 0.30 16 28 C 0.12 1.82 5.59 -3.71 -0.02 1.80 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.08 2.15 6.51 -51.93 -0.34 1.81 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.04 5.53 -51.93 -0.29 0.75 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.86 6.06 -51.93 -0.31 0.55 16 37 H 0.09 1.83 7.57 -51.93 -0.39 1.43 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.83 3.31 -51.93 -0.17 0.66 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.21 0.89 8.06 -52.48 -0.42 0.47 16 44 H 0.22 1.41 5.78 -52.49 -0.30 1.10 16 45 H 0.09 1.51 7.01 -51.93 -0.36 1.15 16 46 H 0.07 0.94 7.02 -51.93 -0.36 0.58 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -32.45 354.40 -8.32 -40.77 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.73 Total: 2.30 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.75 Total: -4.09 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.32 Total: -49.36 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.17 Total: -11.94 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.45 -8.32 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.217 kcal (2) G-P(sol) polarization free energy of solvation -32.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds