Wall clock time and date at job start Tue Mar 31 2020 12:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48501 * 109.47049 * 269.99731 * 3 2 1 5 5 H 1.48507 * 109.47324 * 29.99765 * 3 2 1 6 6 H 1.48500 * 109.47341 * 149.99688 * 3 2 1 7 7 C 1.38817 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99388 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.47418 * 125.65109 * 351.03632 * 9 7 2 11 11 C 1.54908 * 104.93068 * 204.05282 * 10 9 7 12 12 C 1.55273 * 101.52896 * 323.12924 * 11 10 9 13 13 C 1.47022 * 125.64683 * 171.01663 * 9 7 2 14 14 H 1.09002 * 109.88567 * 59.53726 * 13 9 7 15 15 C 1.53004 * 109.88089 * 298.53253 * 13 9 7 16 16 H 1.08996 * 109.49766 * 60.53683 * 15 13 9 17 17 C 1.53045 * 109.49645 * 300.43770 * 15 13 9 18 18 C 1.53042 * 109.53464 * 178.68046 * 17 15 13 19 19 C 1.53188 * 109.31097 * 61.37239 * 18 17 15 20 20 N 1.46926 * 108.77531 * 305.35723 * 19 18 17 21 21 C 1.34780 * 120.63395 * 233.63464 * 20 19 18 22 22 O 1.21614 * 119.99977 * 180.91935 * 21 20 19 23 23 C 1.47374 * 119.99837 * 0.91313 * 21 20 19 24 24 C 1.47024 * 127.19330 * 152.83595 * 23 21 20 25 25 C 1.34169 * 105.95448 * 179.89536 * 24 23 21 26 26 O 1.34212 * 109.12982 * 0.37829 * 25 24 23 27 27 C 1.33657 * 110.90359 * 359.74709 * 26 25 24 28 28 C 1.46930 * 118.73523 * 53.60989 * 20 19 18 29 29 H 0.97004 * 120.00049 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.37260 * 322.94802 * 10 9 7 31 31 H 1.09003 * 110.36685 * 85.15995 * 10 9 7 32 32 H 1.08995 * 111.00450 * 81.12031 * 11 10 9 33 33 H 1.09003 * 111.00715 * 204.97099 * 11 10 9 34 34 H 1.09003 * 110.62339 * 277.00908 * 12 11 10 35 35 H 1.08998 * 110.76064 * 153.77586 * 12 11 10 36 36 H 1.09000 * 109.46157 * 298.70362 * 17 15 13 37 37 H 1.09001 * 109.45883 * 58.66692 * 17 15 13 38 38 H 1.09001 * 109.50119 * 301.41250 * 18 17 15 39 39 H 1.09006 * 109.52173 * 181.33355 * 18 17 15 40 40 H 1.09003 * 109.58617 * 185.57580 * 19 18 17 41 41 H 1.08997 * 109.59154 * 65.14537 * 19 18 17 42 42 H 1.07997 * 127.01500 * 0.02562 * 24 23 21 43 43 H 1.08010 * 125.43467 * 180.12994 * 25 24 23 44 44 H 1.08001 * 125.79625 * 179.97438 * 27 26 25 45 45 H 1.09005 * 109.58379 * 186.60299 * 28 20 19 46 46 H 1.09000 * 109.70190 * 66.25183 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1289 -2.5404 0.1866 11 6 -0.3144 -3.9844 0.7159 12 6 0.7745 -4.7502 -0.0834 13 6 1.9191 -3.7202 -0.1855 14 1 2.6582 -3.9088 0.5932 15 6 2.5806 -3.8074 -1.5624 16 1 3.3687 -3.0580 -1.6354 17 6 1.5330 -3.5556 -2.6493 18 6 2.2001 -3.6100 -4.0255 19 6 2.7980 -5.0034 -4.2439 20 7 3.6980 -5.3126 -3.1245 21 6 4.9720 -5.6892 -3.3515 22 8 5.7022 -5.9586 -2.4169 23 6 5.4803 -5.7746 -4.7322 24 6 6.8723 -5.6165 -5.1782 25 6 6.8535 -5.7783 -6.5099 26 8 5.5924 -6.0086 -6.9072 27 6 4.7567 -6.0109 -5.8642 28 6 3.1828 -5.2030 -1.7529 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4957 -1.8188 0.9166 31 1 -0.6482 -2.4150 -0.7635 32 1 -0.1202 -4.0358 1.7872 33 1 -1.3103 -4.3612 0.4825 34 1 0.4067 -5.0175 -1.0741 35 1 1.1009 -5.6368 0.4602 36 1 0.7581 -4.3199 -2.5908 37 1 1.0853 -2.5728 -2.5014 38 1 2.9917 -2.8624 -4.0760 39 1 1.4584 -3.4072 -4.7982 40 1 3.3589 -5.0180 -5.1784 41 1 1.9976 -5.7423 -4.2841 42 1 7.7342 -5.4138 -4.5597 43 1 7.7151 -5.7270 -7.1592 44 1 3.6897 -6.1719 -5.9099 45 1 3.9976 -5.3493 -1.0437 46 1 2.4144 -5.9582 -1.5875 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963257852.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:15 Heat of formation + Delta-G solvation = 2.743213 kcal Electronic energy + Delta-G solvation = -27822.811043 eV Core-core repulsion = 24100.584366 eV Total energy + Delta-G solvation = -3722.226676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.54600 -41.27032 -39.72347 -37.78612 -34.88070 -34.17529 -33.39871 -32.58900 -31.26454 -30.77042 -28.13349 -26.97227 -26.47658 -24.21897 -23.78220 -22.53662 -22.29836 -21.83610 -20.77343 -19.86261 -18.70946 -18.37396 -17.77750 -17.08111 -17.05316 -16.71788 -16.30756 -15.97490 -15.68103 -15.62925 -15.51620 -14.75940 -14.57633 -14.23195 -14.00884 -13.89891 -13.76637 -13.63510 -13.34259 -13.19999 -13.16077 -12.88081 -12.76975 -12.45701 -12.03907 -11.97460 -11.80762 -11.71691 -11.56816 -11.43640 -11.29592 -11.07456 -10.93010 -10.79696 -10.65365 -9.76140 -9.61109 -8.78275 -7.81891 -5.16925 0.37413 1.12936 1.41851 1.42225 1.50868 1.77002 2.09298 2.25221 2.48423 3.33436 3.45527 3.65632 3.73863 3.77450 3.88444 3.98995 4.06303 4.13067 4.27407 4.29310 4.34581 4.41151 4.45923 4.55499 4.58604 4.71848 4.74682 4.80516 4.82104 4.85790 4.90786 4.99712 5.09813 5.19266 5.23669 5.30918 5.31047 5.44352 5.49643 5.52074 5.58567 5.66880 5.75269 5.85572 5.99138 6.29482 6.35865 7.07350 7.15134 7.83848 8.48846 9.25942 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003738 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.790722 B = 7489.665877 C = 8276.832260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.057 4.057 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.226 4.226 8 H 0.063 0.937 9 N -0.607 5.607 10 C 0.174 3.826 11 C -0.137 4.137 12 C -0.116 4.116 13 C 0.158 3.842 14 H 0.017 0.983 15 C -0.093 4.093 16 H 0.026 0.974 17 C -0.097 4.097 18 C -0.130 4.130 19 C 0.083 3.917 20 N -0.600 5.600 21 C 0.577 3.423 22 O -0.592 6.592 23 C -0.264 4.264 24 C -0.205 4.205 25 C -0.016 4.016 26 O -0.174 6.174 27 C 0.027 3.973 28 C 0.127 3.873 29 H 0.246 0.754 30 H 0.040 0.960 31 H -0.002 1.002 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.249 0.751 44 H 0.258 0.742 45 H 0.064 0.936 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 -15.625 -15.664 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.793 3.207 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.355 4.355 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.175 4.175 12 C -0.153 4.153 13 C 0.050 3.950 14 H 0.035 0.965 15 C -0.114 4.114 16 H 0.045 0.955 17 C -0.134 4.134 18 C -0.168 4.168 19 C -0.038 4.038 20 N -0.331 5.331 21 C 0.368 3.632 22 O -0.474 6.474 23 C -0.268 4.268 24 C -0.225 4.225 25 C -0.081 4.081 26 O -0.068 6.068 27 C -0.042 4.042 28 C 0.004 3.996 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.167 0.833 43 H 0.265 0.735 44 H 0.274 0.726 45 H 0.082 0.918 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.026 -15.579 -15.446 22.507 hybrid contribution 0.738 1.846 0.935 2.197 sum 5.764 -13.733 -14.511 20.794 Atomic orbital electron populations 1.70120 1.05798 1.24871 1.58445 1.25415 0.96429 1.00150 1.03037 0.85305 0.77694 0.80396 0.77343 1.21539 1.21772 1.20322 1.19143 0.90187 0.84040 1.42156 0.91904 1.44672 1.03976 1.00861 1.83619 1.21319 0.83789 0.93304 0.96668 1.22906 0.99268 0.96160 0.99176 1.22696 0.94573 0.96749 1.01279 1.21082 0.94640 0.86057 0.93186 0.96542 1.21723 0.97287 0.95062 0.97339 0.95536 1.21363 0.97206 1.01497 0.93383 1.21898 1.00252 0.96750 0.97864 1.22748 0.94170 0.97228 0.89641 1.48076 1.10795 1.65751 1.08432 1.17839 0.81136 0.76173 0.88062 1.90735 1.57765 1.52715 1.46208 1.21504 0.96184 1.15772 0.93349 1.22937 0.95810 1.07663 0.96063 1.24604 0.85853 1.02697 0.94960 1.83872 1.17751 1.69117 1.36060 1.25554 0.96944 0.99068 0.82650 1.21596 0.98665 0.96911 0.82396 0.94494 0.94132 0.98445 0.92521 0.89619 0.89437 0.89471 0.90307 0.94452 0.94193 0.88328 0.86458 0.87244 0.83255 0.73471 0.72633 0.91752 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.14 10.36 21.65 0.22 -55.91 16 2 C -0.06 -3.26 5.48 84.86 0.47 -2.80 16 3 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.23 -12.79 9.84 84.04 0.83 -11.96 16 8 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 9 N -0.61 -30.50 2.35 -668.27 -1.57 -32.07 16 10 C 0.17 8.34 5.54 86.86 0.48 8.83 16 11 C -0.14 -4.82 7.10 32.03 0.23 -4.59 16 12 C -0.12 -3.57 5.14 31.82 0.16 -3.41 16 13 C 0.16 6.31 2.93 45.34 0.13 6.44 16 14 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 15 C -0.09 -3.36 2.11 -10.71 -0.02 -3.38 16 16 H 0.03 1.17 8.00 -2.39 -0.02 1.15 16 17 C -0.10 -3.15 4.73 30.62 0.14 -3.01 16 18 C -0.13 -3.20 6.08 30.67 0.19 -3.01 16 19 C 0.08 1.51 5.51 86.36 0.48 1.99 16 20 N -0.60 -16.19 2.97 -822.83 -2.45 -18.63 16 21 C 0.58 18.01 7.68 86.65 0.67 18.67 16 22 O -0.59 -23.82 16.48 -4.08 -0.07 -23.88 16 23 C -0.26 -6.30 5.93 -18.99 -0.11 -6.41 16 24 C -0.21 -4.39 11.11 23.65 0.26 -4.12 16 25 C -0.02 -0.21 12.03 66.89 0.80 0.59 16 26 O -0.17 -2.54 10.52 4.46 0.05 -2.49 16 27 C 0.03 0.41 9.88 67.39 0.67 1.08 16 28 C 0.13 3.85 5.59 86.36 0.48 4.33 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.04 2.25 6.51 -2.39 -0.02 2.24 16 31 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.09 2.36 5.53 -2.39 -0.01 2.35 16 35 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 2.18 6.06 -2.39 -0.01 2.17 16 37 H 0.04 1.60 7.57 -2.39 -0.02 1.58 16 38 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.12 1.58 3.31 -2.39 -0.01 1.57 16 41 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.25 1.06 8.06 -2.91 -0.02 1.03 16 44 H 0.26 1.79 5.78 -2.91 -0.02 1.77 16 45 H 0.06 2.27 7.01 -2.38 -0.02 2.26 16 46 H 0.10 2.38 7.02 -2.39 -0.02 2.36 16 Total: -1.00 -78.44 354.40 5.05 -73.39 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.99 Total: 11.41 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.85 Total: -0.76 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -3.79 Total: -106.62 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.02 Total: -26.37 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.44 5.05 -73.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257852.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.130 kcal (2) G-P(sol) polarization free energy of solvation -78.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds