Wall clock time and date at job start Tue Mar 31 2020 12:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86809 * 119.99598 * 2 1 4 4 H 1.48495 * 109.47279 * 267.94878 * 3 2 1 5 5 H 1.48496 * 109.46910 * 27.94995 * 3 2 1 6 6 H 1.48499 * 109.47040 * 147.94985 * 3 2 1 7 7 C 1.38805 * 120.00540 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99855 * 337.00831 * 7 2 1 9 9 N 1.36941 * 120.00535 * 157.01135 * 7 2 1 10 10 C 1.47420 * 125.64507 * 45.24622 * 9 7 2 11 11 C 1.54912 * 104.83247 * 155.91296 * 10 9 7 12 12 C 1.55156 * 101.58151 * 37.00583 * 11 10 9 13 13 C 1.47019 * 125.64794 * 225.29382 * 9 7 2 14 14 H 1.08999 * 109.88223 * 300.58852 * 13 9 7 15 15 C 1.53000 * 109.88734 * 61.60317 * 13 9 7 16 16 H 1.08998 * 109.52254 * 56.21975 * 15 13 9 17 17 C 1.53040 * 109.49508 * 296.14472 * 15 13 9 18 18 C 1.53045 * 109.53889 * 178.68314 * 17 15 13 19 19 C 1.53191 * 109.30915 * 61.35968 * 18 17 15 20 20 N 1.46924 * 108.78016 * 305.36425 * 19 18 17 21 21 C 1.34776 * 120.63301 * 233.58833 * 20 19 18 22 22 O 1.21609 * 119.99834 * 174.00878 * 21 20 19 23 23 C 1.47377 * 119.99886 * 354.01388 * 21 20 19 24 24 C 1.47014 * 127.19247 * 332.46580 * 23 21 20 25 25 C 1.34180 * 105.95572 * 179.83619 * 24 23 21 26 26 O 1.34215 * 109.12251 * 0.43312 * 25 24 23 27 27 C 1.33655 * 110.90619 * 359.71360 * 26 25 24 28 28 C 1.46929 * 118.73439 * 53.61361 * 20 19 18 29 29 H 0.96999 * 120.00413 * 359.97438 * 1 2 3 30 30 H 1.09003 * 110.36867 * 274.75053 * 10 9 7 31 31 H 1.08999 * 110.37116 * 36.95910 * 10 9 7 32 32 H 1.09001 * 111.00507 * 155.08358 * 11 10 9 33 33 H 1.09003 * 111.00072 * 278.93500 * 11 10 9 34 34 H 1.08997 * 110.72000 * 206.13767 * 12 11 10 35 35 H 1.08998 * 110.71709 * 82.86100 * 12 11 10 36 36 H 1.09003 * 109.46534 * 58.65718 * 17 15 13 37 37 H 1.09002 * 109.45678 * 298.70387 * 17 15 13 38 38 H 1.08993 * 109.49563 * 181.31522 * 18 17 15 39 39 H 1.08998 * 109.49293 * 301.41012 * 18 17 15 40 40 H 1.08995 * 109.58845 * 65.15963 * 19 18 17 41 41 H 1.09004 * 109.58195 * 185.57654 * 19 18 17 42 42 H 1.08006 * 127.02457 * 359.97438 * 24 23 21 43 43 H 1.08000 * 125.44212 * 180.14447 * 25 24 23 44 44 H 1.08000 * 125.79898 * 180.02562 * 27 26 25 45 45 H 1.08990 * 109.58845 * 66.17850 * 28 20 19 46 46 H 1.09003 * 109.58466 * 186.60361 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5410 2.0215 -1.3991 5 1 1.4265 2.6648 0.6562 6 1 3.5253 1.4533 0.7430 7 6 2.0103 -1.2020 -0.0005 8 1 1.5347 -2.1004 0.3644 9 7 3.2982 -1.2489 -0.4637 10 6 4.3648 -0.2857 -0.1354 11 6 5.6850 -1.0663 -0.3537 12 6 5.3349 -1.9296 -1.5945 13 6 3.8457 -2.2675 -1.3715 14 1 3.7509 -3.2554 -0.9205 15 6 3.0984 -2.2311 -2.7060 16 1 3.1554 -1.2278 -3.1282 17 6 1.6323 -2.6078 -2.4808 18 6 0.8764 -2.5399 -3.8099 19 6 1.4881 -3.5433 -4.7925 20 7 2.9290 -3.2782 -4.9036 21 6 3.5003 -3.0825 -6.1084 22 8 4.6697 -2.7567 -6.1811 23 6 2.7079 -3.2632 -7.3378 24 6 1.5436 -4.1414 -7.5236 25 6 1.1537 -3.9727 -8.7964 26 8 1.9710 -3.0913 -9.3934 27 6 2.9052 -2.6551 -8.5429 28 6 3.7352 -3.2311 -3.6761 29 1 -0.4851 0.8400 0.0004 30 1 4.3180 0.5745 -0.8032 31 1 4.2794 0.0358 0.9026 32 1 6.5094 -0.3870 -0.5703 33 1 5.9143 -1.6945 0.5072 34 1 5.9376 -2.8375 -1.6150 35 1 5.4670 -1.3568 -2.5124 36 1 1.1833 -1.9123 -1.7717 37 1 1.5748 -3.6205 -2.0817 38 1 -0.1726 -2.7856 -3.6447 39 1 0.9544 -1.5337 -4.2216 40 1 1.3304 -4.5573 -4.4249 41 1 1.0192 -3.4298 -5.7699 42 1 1.0925 -4.7883 -6.7856 43 1 0.3187 -4.4706 -9.2668 44 1 3.6836 -1.9420 -8.7708 45 1 3.7608 -4.2195 -3.2176 46 1 4.7491 -2.9115 -3.9170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963257853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:18 Heat of formation + Delta-G solvation = 0.185257 kcal Electronic energy + Delta-G solvation = -28007.500028 eV Core-core repulsion = 24285.162431 eV Total energy + Delta-G solvation = -3722.337598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.49752 -41.19174 -39.72888 -37.87861 -34.76034 -34.59308 -33.35332 -32.51621 -31.71019 -30.71655 -28.61715 -26.75027 -26.28501 -24.31089 -23.81854 -22.58502 -22.30028 -21.41383 -20.67592 -20.26533 -18.98727 -18.44156 -17.63869 -17.30360 -17.07746 -16.80097 -16.62808 -15.92415 -15.49360 -15.44399 -15.13372 -14.92200 -14.82740 -14.37402 -14.16485 -14.07308 -13.88781 -13.83704 -13.43960 -13.29746 -13.12674 -12.97843 -12.67491 -12.50526 -12.21927 -12.16890 -12.09342 -11.68284 -11.60186 -11.33074 -11.13777 -11.07031 -10.86896 -10.60473 -10.37505 -9.77836 -9.55289 -8.65133 -8.10585 -5.58805 0.42932 1.14377 1.32733 1.39213 1.41999 1.86079 2.09679 2.27504 2.43787 2.97535 3.43335 3.53581 3.78053 3.82160 3.96994 4.04469 4.07288 4.12815 4.17241 4.25399 4.27038 4.41366 4.49626 4.57576 4.65521 4.66400 4.72048 4.78327 4.81401 4.88732 4.94473 4.98591 5.02066 5.04766 5.10449 5.15742 5.31348 5.34310 5.38049 5.46430 5.57131 5.65891 5.96732 6.00816 6.03755 6.23216 6.40494 6.89279 7.08048 7.58572 8.33209 8.95346 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.004001 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.294951 B = 6996.413453 C = 7690.733914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.000 4.000 3 Si 0.910 3.090 4 H -0.301 1.301 5 H -0.311 1.311 6 H -0.221 1.221 7 C -0.231 4.231 8 H 0.050 0.950 9 N -0.621 5.621 10 C 0.099 3.901 11 C -0.121 4.121 12 C -0.122 4.122 13 C 0.166 3.834 14 H 0.043 0.957 15 C -0.086 4.086 16 H 0.029 0.971 17 C -0.125 4.125 18 C -0.126 4.126 19 C 0.100 3.900 20 N -0.599 5.599 21 C 0.581 3.419 22 O -0.589 6.589 23 C -0.266 4.266 24 C -0.208 4.208 25 C -0.021 4.021 26 O -0.179 6.179 27 C 0.044 3.956 28 C 0.124 3.876 29 H 0.260 0.740 30 H 0.005 0.995 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.179 0.821 43 H 0.251 0.749 44 H 0.227 0.773 45 H 0.082 0.918 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 -9.949 -15.596 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.229 1.229 5 H -0.240 1.240 6 H -0.144 1.144 7 C -0.360 4.360 8 H 0.067 0.933 9 N -0.347 5.347 10 C -0.025 4.025 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.060 3.940 14 H 0.060 0.940 15 C -0.108 4.108 16 H 0.047 0.953 17 C -0.162 4.162 18 C -0.164 4.164 19 C -0.021 4.021 20 N -0.329 5.329 21 C 0.372 3.628 22 O -0.472 6.472 23 C -0.270 4.270 24 C -0.226 4.226 25 C -0.086 4.086 26 O -0.074 6.074 27 C -0.027 4.027 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.107 0.893 41 H 0.133 0.867 42 H 0.197 0.803 43 H 0.267 0.733 44 H 0.243 0.757 45 H 0.100 0.900 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.495 -9.618 -15.830 19.061 hybrid contribution -0.220 1.365 0.717 1.557 sum 4.275 -8.254 -15.113 17.743 Atomic orbital electron populations 1.70056 1.07205 1.27177 1.52559 1.25830 0.95002 1.01170 0.97900 0.86783 0.80722 0.80700 0.77798 1.22922 1.23986 1.14362 1.17928 0.86419 0.94964 1.36721 0.93255 1.44711 1.07000 1.30624 1.52391 1.22358 0.89932 0.92941 0.97257 1.22711 0.95972 0.98805 0.98447 1.22649 0.94725 1.00809 0.97841 1.21131 0.92085 0.92480 0.88282 0.93960 1.21695 0.96545 0.96794 0.95726 0.95269 1.21768 0.95022 1.01779 0.97625 1.21838 1.00210 0.98521 0.95829 1.22409 0.78664 0.99256 1.01784 1.48010 1.10131 1.69272 1.05513 1.17770 0.85818 0.75892 0.83347 1.90730 1.18425 1.50418 1.87591 1.21459 1.02816 1.07695 0.95038 1.23273 0.96979 1.03641 0.98740 1.24779 0.97268 0.93899 0.92697 1.83857 1.34781 1.48522 1.40196 1.24605 0.92684 0.98783 0.86634 1.21672 0.95109 0.99677 0.83458 0.93126 0.97784 0.93343 0.89550 0.90187 0.88611 0.92081 0.89992 0.92928 0.90073 0.94565 0.89280 0.86662 0.80336 0.73332 0.75715 0.89956 0.89994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.97 21.65 0.30 -55.52 16 2 C 0.00 0.00 5.33 84.86 0.45 0.45 16 3 Si 0.91 45.50 25.27 68.60 1.73 47.23 16 4 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 5 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 6 H -0.22 -9.92 4.57 99.48 0.45 -9.47 16 7 C -0.23 -12.59 7.20 84.03 0.60 -11.98 16 8 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 9 N -0.62 -28.90 2.92 -668.27 -1.95 -30.86 16 10 C 0.10 4.15 4.54 86.86 0.39 4.54 16 11 C -0.12 -3.81 7.09 31.99 0.23 -3.58 16 12 C -0.12 -3.83 5.46 31.78 0.17 -3.66 16 13 C 0.17 6.38 2.82 45.34 0.13 6.51 16 14 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 15 C -0.09 -3.28 1.95 -10.72 -0.02 -3.30 16 16 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 17 C -0.12 -4.92 4.75 30.62 0.15 -4.77 16 18 C -0.13 -4.11 6.08 30.67 0.19 -3.92 16 19 C 0.10 2.51 5.31 86.36 0.46 2.97 16 20 N -0.60 -18.01 2.97 -822.86 -2.45 -20.45 16 21 C 0.58 18.39 7.65 86.65 0.66 19.06 16 22 O -0.59 -22.43 16.44 -4.06 -0.07 -22.50 16 23 C -0.27 -6.49 5.72 -19.00 -0.11 -6.60 16 24 C -0.21 -3.53 8.66 23.65 0.20 -3.32 16 25 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 26 O -0.18 -3.08 10.52 4.44 0.05 -3.04 16 27 C 0.04 0.89 12.00 67.39 0.81 1.70 16 28 C 0.12 3.92 5.35 86.36 0.46 4.38 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.00 0.20 5.81 -2.39 -0.01 0.19 16 31 H 0.05 2.10 6.32 -2.39 -0.02 2.08 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 1.99 7.48 -2.39 -0.02 1.97 16 36 H 0.08 4.14 4.86 -2.39 -0.01 4.13 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.12 2.42 4.03 -2.38 -0.01 2.41 16 42 H 0.18 2.33 6.55 -2.91 -0.02 2.31 16 43 H 0.25 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.23 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.08 2.73 6.02 -2.39 -0.01 2.72 16 Total: -1.00 -72.40 347.75 3.93 -68.47 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.73 Total: 17.66 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.58 Total: -0.99 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.10 Total: -106.83 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.02 Total: -25.54 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.73 Total: 47.23 kcal Total: -72.40 3.93 -68.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.651 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds