Wall clock time and date at job start Tue Mar 31 2020 12:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48498 * 109.47102 * 89.99847 * 3 2 1 5 5 H 1.48496 * 109.46999 * 209.99522 * 3 2 1 6 6 H 1.48496 * 109.46883 * 329.99855 * 3 2 1 7 7 C 1.38819 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99272 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64891 * 349.45543 * 9 7 2 11 11 C 1.54691 * 104.94032 * 204.07345 * 10 9 7 12 12 C 1.55157 * 101.67832 * 323.28024 * 11 10 9 13 13 C 1.47020 * 125.64538 * 169.76498 * 9 7 2 14 14 H 1.09001 * 109.88230 * 59.48714 * 13 9 7 15 15 C 1.52992 * 109.88387 * 298.47680 * 13 9 7 16 16 H 1.08996 * 109.50168 * 63.39089 * 15 13 9 17 17 C 1.53038 * 109.49953 * 183.48923 * 15 13 9 18 18 C 1.53042 * 109.54201 * 181.31671 * 17 15 13 19 19 C 1.53190 * 109.30848 * 298.63556 * 18 17 15 20 20 N 1.46922 * 108.77855 * 54.63416 * 19 18 17 21 21 C 1.34782 * 120.62882 * 126.41262 * 20 19 18 22 22 O 1.21619 * 119.99331 * 186.43859 * 21 20 19 23 23 C 1.47377 * 120.00407 * 6.43537 * 21 20 19 24 24 C 1.47012 * 127.19339 * 212.45381 * 23 21 20 25 25 C 1.34183 * 105.95207 * 179.83581 * 24 23 21 26 26 O 1.34209 * 109.12613 * 0.42988 * 25 24 23 27 27 C 1.33657 * 110.90757 * 359.71108 * 26 25 24 28 28 C 1.46921 * 118.73818 * 306.38898 * 20 19 18 29 29 H 0.97008 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.36840 * 323.00829 * 10 9 7 31 31 H 1.09004 * 110.36224 * 85.32620 * 10 9 7 32 32 H 1.09002 * 111.10174 * 205.10859 * 11 10 9 33 33 H 1.09002 * 110.84741 * 81.34036 * 11 10 9 34 34 H 1.08994 * 110.71747 * 276.97084 * 12 11 10 35 35 H 1.08997 * 110.71910 * 153.69765 * 12 11 10 36 36 H 1.09004 * 109.46193 * 301.33780 * 17 15 13 37 37 H 1.09002 * 109.45919 * 61.29353 * 17 15 13 38 38 H 1.09001 * 109.49844 * 178.68693 * 18 17 15 39 39 H 1.09000 * 109.52243 * 58.60032 * 18 17 15 40 40 H 1.09005 * 109.58547 * 294.84004 * 19 18 17 41 41 H 1.09006 * 109.70243 * 174.49536 * 19 18 17 42 42 H 1.08000 * 127.02375 * 359.97438 * 24 23 21 43 43 H 1.08001 * 125.43560 * 180.14931 * 25 24 23 44 44 H 1.07996 * 125.80348 * 179.97438 * 27 26 25 45 45 H 1.08995 * 109.59097 * 293.82198 * 28 20 19 46 46 H 1.08999 * 109.70546 * 173.46514 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4400 -0.6999 6 1 1.4477 2.6525 -0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1242 -2.5432 0.2192 11 6 -0.2974 -3.9921 0.7326 12 6 0.7728 -4.7494 -0.0972 13 6 1.9152 -3.7181 -0.2112 14 1 2.6695 -3.9147 0.5507 15 6 2.5493 -3.7907 -1.6017 16 1 3.3692 -3.0754 -1.6655 17 6 3.0834 -5.2038 -1.8464 18 6 3.7471 -5.2689 -3.2239 19 6 2.7069 -4.9515 -4.3028 20 7 2.0844 -3.6571 -3.9934 21 6 2.0536 -2.6726 -4.9134 22 8 1.6421 -1.5692 -4.6095 23 6 2.5185 -2.9331 -6.2874 24 6 3.1745 -1.9840 -7.1985 25 6 3.4164 -2.6652 -8.3290 26 8 2.9641 -3.9212 -8.1909 27 6 2.4247 -4.1037 -6.9816 28 6 1.4957 -3.4566 -2.6623 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4734 -1.8311 0.9668 31 1 -0.6657 -2.4077 -0.7170 32 1 -1.2974 -4.3682 0.5166 33 1 -0.0808 -4.0543 1.7991 34 1 0.3855 -5.0064 -1.0831 35 1 1.1099 -5.6415 0.4305 36 1 3.8156 -5.4535 -1.0784 37 1 2.2588 -5.9156 -1.8066 38 1 4.1477 -6.2692 -3.3879 39 1 4.5563 -4.5402 -3.2731 40 1 1.9442 -5.7302 -4.3154 41 1 3.1924 -4.8999 -5.2774 42 1 3.4148 -0.9503 -6.9981 43 1 3.8944 -2.2652 -9.2110 44 1 1.9885 -5.0216 -6.6164 45 1 0.6342 -4.1133 -2.5410 46 1 1.1822 -2.4185 -2.5516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963257854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:21 Heat of formation + Delta-G solvation = 13.969430 kcal Electronic energy + Delta-G solvation = -28207.188251 eV Core-core repulsion = 24485.448380 eV Total energy + Delta-G solvation = -3721.739871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.64633 -39.87343 -38.07423 -36.33030 -33.34403 -32.63617 -32.16156 -31.08532 -29.88226 -29.18131 -26.69119 -25.63629 -24.46010 -22.87772 -22.63278 -21.53145 -20.97321 -20.05355 -19.46303 -18.39953 -17.51985 -16.65264 -16.52967 -16.08174 -15.78105 -14.89347 -14.71820 -14.57094 -14.40483 -14.06475 -13.77036 -13.69645 -13.15615 -12.97465 -12.92568 -12.72942 -12.32275 -12.12125 -11.89291 -11.63556 -11.47727 -11.25312 -10.94434 -10.82696 -10.72256 -10.58734 -10.12667 -9.99464 -9.90781 -9.78305 -9.76909 -9.57807 -9.51896 -9.45502 -8.83401 -8.47666 -8.22821 -6.69944 -5.61134 -2.96296 1.37031 2.06168 2.79569 3.17888 3.48243 3.48655 3.55164 3.56575 4.46769 4.59381 4.63191 4.84823 4.90478 5.03354 5.13501 5.32172 5.36175 5.41513 5.54895 5.59920 5.62650 5.65240 5.70480 5.76964 5.81864 5.90703 5.96160 6.00692 6.11744 6.17175 6.23597 6.25620 6.38908 6.42009 6.56185 6.64437 6.76486 6.84614 6.89974 6.94504 7.04442 7.13372 7.65292 7.70609 7.73859 7.92211 8.40426 8.52364 9.32064 9.93619 10.59633 11.49538 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.004856 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.305526 B = 5764.373626 C = 7202.148567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.291 1.291 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.072 0.928 9 N -0.594 5.594 10 C 0.169 3.831 11 C -0.150 4.150 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.034 0.966 15 C -0.106 4.106 16 H 0.070 0.930 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.095 3.905 20 N -0.606 5.606 21 C 0.576 3.424 22 O -0.517 6.517 23 C -0.218 4.218 24 C -0.167 4.167 25 C -0.044 4.044 26 O -0.178 6.178 27 C 0.003 3.997 28 C 0.127 3.873 29 H 0.251 0.749 30 H 0.078 0.922 31 H 0.020 0.980 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.158 0.842 43 H 0.207 0.793 44 H 0.213 0.787 45 H 0.060 0.940 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -14.386 -12.421 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.198 4.198 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.090 0.910 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.189 4.189 12 C -0.165 4.165 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.127 4.127 16 H 0.088 0.912 17 C -0.153 4.153 18 C -0.171 4.171 19 C -0.028 4.028 20 N -0.340 5.340 21 C 0.364 3.636 22 O -0.393 6.393 23 C -0.223 4.223 24 C -0.187 4.187 25 C -0.110 4.110 26 O -0.074 6.074 27 C -0.066 4.066 28 C 0.007 3.993 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.176 0.824 43 H 0.224 0.776 44 H 0.230 0.770 45 H 0.078 0.922 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.436 -13.725 -12.463 19.320 hybrid contribution 0.561 1.017 0.057 1.163 sum 5.997 -12.708 -12.405 18.745 Atomic orbital electron populations 1.69913 1.04872 1.24925 1.56680 1.24766 0.95599 0.97541 1.01850 0.86187 0.78841 0.83967 0.77196 1.21821 1.20786 1.21683 1.18893 0.90188 0.82311 1.43837 0.90980 1.44514 1.03931 1.00284 1.83029 1.21468 0.84770 0.90527 0.98777 1.22993 0.97103 0.99763 0.99027 1.22658 0.97016 0.97199 0.99671 1.20893 0.93684 0.87064 0.92373 0.94829 1.21952 0.98507 0.95107 0.97170 0.91193 1.21616 0.99926 0.98050 0.95727 1.21894 0.98111 1.01388 0.95667 1.22031 0.95965 0.85477 0.99375 1.48070 1.58021 1.13290 1.14631 1.17364 0.78630 0.84346 0.83298 1.90889 1.46132 1.22249 1.80044 1.21683 1.08813 0.94780 0.97030 1.22834 1.02518 1.00818 0.92536 1.23897 1.04274 0.81842 1.00944 1.83776 1.59502 1.31185 1.32919 1.24585 0.99666 0.99388 0.82980 1.21748 0.94312 1.05162 0.78100 0.93830 0.90363 0.96205 0.92618 0.92501 0.91772 0.92564 0.92055 0.91941 0.91245 0.91669 0.91571 0.89763 0.82438 0.77598 0.77043 0.92218 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.57 10.42 55.49 0.58 -26.99 16 2 C 0.00 -0.03 5.48 -17.43 -0.10 -0.12 16 3 Si 0.91 23.35 29.55 -169.99 -5.02 18.32 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.22 -6.29 9.89 -15.06 -0.15 -6.43 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.59 -14.81 2.37 -162.71 -0.39 -15.20 16 10 C 0.17 4.10 5.49 -2.65 -0.01 4.09 16 11 C -0.15 -2.82 7.07 -24.70 -0.17 -2.99 16 12 C -0.13 -2.14 5.20 -24.90 -0.13 -2.27 16 13 C 0.17 3.34 2.96 -66.96 -0.20 3.15 16 14 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.11 -1.91 2.10 -90.50 -0.19 -2.10 16 16 H 0.07 1.47 8.07 -51.93 -0.42 1.05 16 17 C -0.12 -1.53 4.88 -26.69 -0.13 -1.66 16 18 C -0.13 -1.50 6.08 -26.61 -0.16 -1.67 16 19 C 0.09 1.08 5.30 -3.71 -0.02 1.06 16 20 N -0.61 -9.96 2.97 -174.06 -0.52 -10.48 16 21 C 0.58 10.72 7.64 -12.54 -0.10 10.63 16 22 O -0.52 -12.47 16.51 5.26 0.09 -12.38 16 23 C -0.22 -3.15 5.63 -103.28 -0.58 -3.74 16 24 C -0.17 -2.15 11.13 -37.46 -0.42 -2.56 16 25 C -0.04 -0.42 12.03 29.30 0.35 -0.06 16 26 O -0.18 -1.83 10.52 7.66 0.08 -1.75 16 27 C 0.00 0.03 9.71 30.08 0.29 0.33 16 28 C 0.13 2.45 5.28 -3.71 -0.02 2.43 16 29 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 2.14 6.62 -51.93 -0.34 1.80 16 31 H 0.02 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.02 5.45 -51.93 -0.28 0.74 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.76 7.02 -51.93 -0.36 0.40 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.82 4.44 -51.93 -0.23 0.59 16 42 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.21 1.55 6.72 -52.49 -0.35 1.20 16 45 H 0.06 1.08 6.02 -51.93 -0.31 0.77 16 46 H 0.11 2.88 6.60 -51.93 -0.34 2.53 16 LS Contribution 356.02 15.07 5.37 5.37 Total: -1.00 -34.58 356.02 -8.39 -42.97 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.85 Total: 2.07 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.73 Total: -1.93 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.32 Total: -52.67 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.17 Total: -14.13 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.58 -8.39 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.938 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds