Wall clock time and date at job start Tue Mar 31 2020 12:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00204 * 2 1 4 4 H 1.48498 * 109.47102 * 89.99847 * 3 2 1 5 5 H 1.48496 * 109.46999 * 209.99522 * 3 2 1 6 6 H 1.48496 * 109.46883 * 329.99855 * 3 2 1 7 7 C 1.38819 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99272 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.47424 * 125.64891 * 349.45543 * 9 7 2 11 11 C 1.54691 * 104.94032 * 204.07345 * 10 9 7 12 12 C 1.55157 * 101.67832 * 323.28024 * 11 10 9 13 13 C 1.47020 * 125.64538 * 169.76498 * 9 7 2 14 14 H 1.09001 * 109.88230 * 59.48714 * 13 9 7 15 15 C 1.52992 * 109.88387 * 298.47680 * 13 9 7 16 16 H 1.08996 * 109.50168 * 63.39089 * 15 13 9 17 17 C 1.53038 * 109.49953 * 183.48923 * 15 13 9 18 18 C 1.53042 * 109.54201 * 181.31671 * 17 15 13 19 19 C 1.53190 * 109.30848 * 298.63556 * 18 17 15 20 20 N 1.46922 * 108.77855 * 54.63416 * 19 18 17 21 21 C 1.34782 * 120.62882 * 126.41262 * 20 19 18 22 22 O 1.21619 * 119.99331 * 186.43859 * 21 20 19 23 23 C 1.47377 * 120.00407 * 6.43537 * 21 20 19 24 24 C 1.47012 * 127.19339 * 212.45381 * 23 21 20 25 25 C 1.34183 * 105.95207 * 179.83581 * 24 23 21 26 26 O 1.34209 * 109.12613 * 0.42988 * 25 24 23 27 27 C 1.33657 * 110.90757 * 359.71108 * 26 25 24 28 28 C 1.46921 * 118.73818 * 306.38898 * 20 19 18 29 29 H 0.97008 * 119.99703 * 0.02562 * 1 2 3 30 30 H 1.08995 * 110.36840 * 323.00829 * 10 9 7 31 31 H 1.09004 * 110.36224 * 85.32620 * 10 9 7 32 32 H 1.09002 * 111.10174 * 205.10859 * 11 10 9 33 33 H 1.09002 * 110.84741 * 81.34036 * 11 10 9 34 34 H 1.08994 * 110.71747 * 276.97084 * 12 11 10 35 35 H 1.08997 * 110.71910 * 153.69765 * 12 11 10 36 36 H 1.09004 * 109.46193 * 301.33780 * 17 15 13 37 37 H 1.09002 * 109.45919 * 61.29353 * 17 15 13 38 38 H 1.09001 * 109.49844 * 178.68693 * 18 17 15 39 39 H 1.09000 * 109.52243 * 58.60032 * 18 17 15 40 40 H 1.09005 * 109.58547 * 294.84004 * 19 18 17 41 41 H 1.09006 * 109.70243 * 174.49536 * 19 18 17 42 42 H 1.08000 * 127.02375 * 359.97438 * 24 23 21 43 43 H 1.08001 * 125.43560 * 180.14931 * 25 24 23 44 44 H 1.07996 * 125.80348 * 179.97438 * 27 26 25 45 45 H 1.08995 * 109.59097 * 293.82198 * 28 20 19 46 46 H 1.08999 * 109.70546 * 173.46514 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4400 -0.6999 6 1 1.4477 2.6525 -0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1242 -2.5432 0.2192 11 6 -0.2974 -3.9921 0.7326 12 6 0.7728 -4.7494 -0.0972 13 6 1.9152 -3.7181 -0.2112 14 1 2.6695 -3.9147 0.5507 15 6 2.5493 -3.7907 -1.6017 16 1 3.3692 -3.0754 -1.6655 17 6 3.0834 -5.2038 -1.8464 18 6 3.7471 -5.2689 -3.2239 19 6 2.7069 -4.9515 -4.3028 20 7 2.0844 -3.6571 -3.9934 21 6 2.0536 -2.6726 -4.9134 22 8 1.6421 -1.5692 -4.6095 23 6 2.5185 -2.9331 -6.2874 24 6 3.1745 -1.9840 -7.1985 25 6 3.4164 -2.6652 -8.3290 26 8 2.9641 -3.9212 -8.1909 27 6 2.4247 -4.1037 -6.9816 28 6 1.4957 -3.4566 -2.6623 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4734 -1.8311 0.9668 31 1 -0.6657 -2.4077 -0.7170 32 1 -1.2974 -4.3682 0.5166 33 1 -0.0808 -4.0543 1.7991 34 1 0.3855 -5.0064 -1.0831 35 1 1.1099 -5.6415 0.4305 36 1 3.8156 -5.4535 -1.0784 37 1 2.2588 -5.9156 -1.8066 38 1 4.1477 -6.2692 -3.3879 39 1 4.5563 -4.5402 -3.2731 40 1 1.9442 -5.7302 -4.3154 41 1 3.1924 -4.8999 -5.2774 42 1 3.4148 -0.9503 -6.9981 43 1 3.8944 -2.2652 -9.2110 44 1 1.9885 -5.0216 -6.6164 45 1 0.6342 -4.1133 -2.5410 46 1 1.1822 -2.4185 -2.5516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963257854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:20 Heat of formation + Delta-G solvation = -9.118826 kcal Electronic energy + Delta-G solvation = -28208.189433 eV Core-core repulsion = 24485.448380 eV Total energy + Delta-G solvation = -3722.741053 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.53702 -41.24315 -39.66643 -37.80333 -34.88607 -34.18316 -33.46902 -32.34535 -31.21042 -30.79370 -28.24140 -26.85895 -26.49854 -24.18275 -23.80731 -22.48942 -22.23233 -21.74137 -20.72115 -19.84387 -18.75707 -18.45459 -17.71496 -17.19734 -17.04176 -16.75385 -16.07657 -15.96031 -15.67857 -15.52837 -15.49821 -14.82213 -14.45131 -14.24316 -14.06122 -13.92093 -13.88730 -13.69141 -13.31552 -13.15608 -12.97318 -12.92712 -12.76117 -12.69613 -12.14121 -11.99685 -11.82157 -11.76211 -11.51116 -11.36283 -11.19248 -11.12866 -11.08530 -10.78524 -10.66335 -9.74812 -9.55598 -8.78416 -7.85371 -5.18783 0.40794 1.11526 1.33887 1.38964 1.44670 1.82360 2.05944 2.23541 2.45910 3.32649 3.50076 3.64592 3.75697 3.89520 3.91911 3.97254 4.10563 4.15612 4.21858 4.30861 4.34093 4.39624 4.48689 4.58962 4.63142 4.72184 4.80269 4.84912 4.91904 4.96823 4.99394 5.03119 5.08748 5.18762 5.23766 5.27829 5.32233 5.37975 5.47628 5.55371 5.60336 5.65062 5.71116 5.82832 5.97480 6.27436 6.43213 7.12810 7.15530 7.83231 8.46944 9.24015 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.004856 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.305526 B = 5764.373626 C = 7202.148567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.960 3.040 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.299 1.299 7 C -0.221 4.221 8 H 0.067 0.933 9 N -0.612 5.612 10 C 0.173 3.827 11 C -0.136 4.136 12 C -0.111 4.111 13 C 0.156 3.844 14 H 0.034 0.966 15 C -0.095 4.095 16 H 0.024 0.976 17 C -0.107 4.107 18 C -0.129 4.129 19 C 0.086 3.914 20 N -0.603 5.603 21 C 0.567 3.433 22 O -0.599 6.599 23 C -0.263 4.263 24 C -0.212 4.212 25 C -0.009 4.009 26 O -0.169 6.169 27 C 0.042 3.958 28 C 0.139 3.861 29 H 0.243 0.757 30 H 0.037 0.963 31 H -0.016 1.016 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.042 0.958 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.142 0.858 43 H 0.253 0.747 44 H 0.253 0.747 45 H 0.075 0.925 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.154 -19.585 -14.253 25.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.255 4.255 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.226 1.226 7 C -0.351 4.351 8 H 0.085 0.915 9 N -0.336 5.336 10 C 0.048 3.952 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.049 3.951 14 H 0.052 0.948 15 C -0.117 4.117 16 H 0.043 0.957 17 C -0.145 4.145 18 C -0.167 4.167 19 C -0.034 4.034 20 N -0.335 5.335 21 C 0.357 3.643 22 O -0.480 6.480 23 C -0.268 4.268 24 C -0.231 4.231 25 C -0.075 4.075 26 O -0.063 6.063 27 C -0.028 4.028 28 C 0.017 3.983 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.002 0.998 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.268 0.732 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.931 -19.020 -14.297 24.783 hybrid contribution 0.168 2.590 0.574 2.659 sum 7.099 -16.429 -13.723 22.553 Atomic orbital electron populations 1.70128 1.05959 1.24668 1.58670 1.25469 0.96433 1.00454 1.03122 0.85335 0.77509 0.80572 0.77574 1.20309 1.20683 1.22606 1.19115 0.90215 0.84030 1.41743 0.91535 1.44740 1.04432 1.01438 1.83028 1.21226 0.84153 0.93720 0.96066 1.22850 0.99517 0.95570 0.99532 1.22640 0.94465 0.97122 1.00594 1.21226 0.95080 0.85484 0.93271 0.94784 1.21768 0.96477 0.97834 0.95594 0.95705 1.21587 1.01138 0.94209 0.97524 1.21918 0.97212 1.03380 0.94150 1.22516 0.97034 0.83331 1.00556 1.48189 1.57278 1.15017 1.12996 1.18109 0.77432 0.83545 0.85213 1.90837 1.49916 1.25560 1.81724 1.21458 1.12269 0.97492 0.95557 1.22926 1.05112 1.00871 0.94239 1.24563 1.01551 0.80750 1.00612 1.83850 1.58885 1.31279 1.32330 1.25100 0.96811 0.98860 0.82027 1.21331 0.95457 1.01068 0.80437 0.94788 0.94481 0.99813 0.89954 0.91807 0.90375 0.88201 0.90854 0.89189 0.86545 0.93866 0.87657 0.87620 0.84041 0.73152 0.73169 0.90680 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.29 10.42 21.65 0.23 -61.07 16 2 C -0.06 -3.83 5.48 84.86 0.46 -3.36 16 3 Si 0.96 51.08 29.55 68.60 2.03 53.11 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 6 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 7 C -0.22 -13.26 9.89 84.03 0.83 -12.43 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.61 -32.20 2.37 -668.71 -1.58 -33.78 16 10 C 0.17 8.87 5.49 86.78 0.48 9.34 16 11 C -0.14 -4.92 7.07 31.91 0.23 -4.70 16 12 C -0.11 -3.37 5.20 31.78 0.17 -3.20 16 13 C 0.16 6.17 2.96 45.34 0.13 6.31 16 14 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 15 C -0.10 -3.46 2.10 -10.72 -0.02 -3.48 16 16 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 17 C -0.11 -2.43 4.88 30.62 0.15 -2.28 16 18 C -0.13 -2.38 6.08 30.67 0.19 -2.19 16 19 C 0.09 1.62 5.30 86.36 0.46 2.07 16 20 N -0.60 -19.89 2.97 -822.83 -2.45 -22.33 16 21 C 0.57 22.35 7.64 86.65 0.66 23.01 16 22 O -0.60 -32.10 16.51 -4.09 -0.07 -32.17 16 23 C -0.26 -7.55 5.63 -18.99 -0.11 -7.66 16 24 C -0.21 -5.47 11.13 23.65 0.26 -5.21 16 25 C -0.01 -0.15 12.03 66.89 0.80 0.66 16 26 O -0.17 -2.73 10.52 4.49 0.05 -2.69 16 27 C 0.04 0.74 9.71 67.40 0.65 1.39 16 28 C 0.14 5.55 5.28 86.36 0.46 6.01 16 29 H 0.24 15.47 8.31 -92.70 -0.77 14.70 16 30 H 0.04 2.17 6.62 -2.39 -0.02 2.15 16 31 H -0.02 -0.92 8.13 -2.39 -0.02 -0.94 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.18 5.45 -2.39 -0.01 2.17 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.09 1.63 7.02 -2.39 -0.02 1.62 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.11 1.55 4.44 -2.38 -0.01 1.54 16 42 H 0.14 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.25 1.54 8.06 -2.91 -0.02 1.52 16 44 H 0.25 2.21 6.72 -2.91 -0.02 2.19 16 45 H 0.08 2.70 6.02 -2.39 -0.01 2.68 16 46 H 0.04 2.23 6.60 -2.39 -0.02 2.21 16 Total: -1.00 -90.23 356.02 4.99 -85.24 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.98 Total: 9.39 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.80 Total: 4.29 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -3.80 Total: -117.18 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.02 Total: -34.86 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.03 Total: 53.11 kcal Total: -90.23 4.99 -85.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963257854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.120 kcal (2) G-P(sol) polarization free energy of solvation -90.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds