Wall clock time and date at job start Tue Mar 31 2020 12:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99546 * 2 1 4 4 C 1.38751 * 120.06263 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94942 * 179.68571 * 4 3 2 6 6 C 1.38296 * 120.05072 * 0.56241 * 5 4 3 7 7 C 1.50698 * 119.94118 * 179.72673 * 6 5 4 8 8 C 1.50704 * 109.47177 * 264.73010 * 7 6 5 9 9 O 1.21276 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99540 * 180.02562 * 8 7 6 11 11 C 1.47422 * 125.65574 * 0.02562 * 10 8 7 12 12 C 1.54904 * 104.83588 * 155.83543 * 11 10 8 13 13 C 1.55163 * 101.58089 * 37.01349 * 12 11 10 14 14 H 1.09002 * 110.71868 * 83.03475 * 13 12 11 15 15 N 1.46490 * 110.71993 * 206.13410 * 13 12 11 16 16 C 1.36935 * 120.00121 * 273.54103 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.47030 * 125.64522 * 179.97438 * 10 8 7 25 25 C 1.38240 * 120.11218 * 359.45735 * 6 5 4 26 26 C 1.50703 * 119.97046 * 180.26812 * 25 6 5 27 27 C 1.38166 * 120.05582 * 0.24974 * 25 6 5 28 28 H 1.08999 * 109.46892 * 59.99975 * 1 2 3 29 29 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 300.00334 * 1 2 3 31 31 H 1.08003 * 120.02248 * 359.95908 * 4 3 2 32 32 H 1.07997 * 119.97692 * 180.31427 * 5 4 3 33 33 H 1.08997 * 109.47077 * 144.72712 * 7 6 5 34 34 H 1.08997 * 109.47174 * 24.73246 * 7 6 5 35 35 H 1.09000 * 110.36241 * 36.99895 * 11 10 8 36 36 H 1.09002 * 110.37154 * 274.68108 * 11 10 8 37 37 H 1.08994 * 111.00996 * 278.93912 * 12 11 10 38 38 H 1.09004 * 111.00310 * 155.08595 * 12 11 10 39 39 H 0.97000 * 120.00577 * 93.54703 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.08999 * 109.88565 * 61.67072 * 24 10 8 42 42 H 1.08999 * 109.87582 * 300.50826 * 24 10 8 43 43 H 1.09001 * 109.46303 * 90.00364 * 26 25 6 44 44 H 1.08997 * 109.46717 * 209.99664 * 26 25 6 45 45 H 1.08998 * 109.47163 * 330.00632 * 26 25 6 46 46 H 1.08006 * 120.02456 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0071 6 6 3.3019 3.6759 0.0014 7 6 3.9860 5.0186 0.0023 8 6 4.3242 5.4111 -1.4128 9 8 4.0376 4.6733 -2.3317 10 7 4.9453 6.5820 -1.6572 11 6 5.3500 7.5688 -0.6395 12 6 6.5086 8.3615 -1.2943 13 6 6.0352 8.4435 -2.7697 14 1 5.3359 9.2686 -2.9049 15 7 7.1791 8.5825 -3.6741 16 6 7.6865 9.8239 -3.9506 17 1 7.2436 10.7006 -3.5016 18 6 8.7702 9.9557 -4.8081 19 7 9.3097 8.8873 -5.3558 20 14 9.4627 11.6492 -5.1847 21 1 8.7717 12.2137 -6.3719 22 1 9.2499 12.5419 -4.0173 23 1 10.9168 11.5383 -5.4647 24 6 5.3325 7.0862 -2.9829 25 6 4.0559 2.5172 0.0004 26 6 5.5608 2.5984 0.0003 27 6 3.4311 1.2849 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2128 2.3204 0.0003 32 1 1.3339 4.5114 0.0127 33 1 4.9010 4.9598 0.5917 34 1 3.3211 5.7648 0.4373 35 1 5.6977 7.0636 0.2616 36 1 4.5195 8.2348 -0.4054 37 1 7.4489 7.8158 -1.2155 38 1 6.5980 9.3558 -0.8568 39 1 7.5772 7.7951 -4.0772 40 1 8.9503 8.0079 -5.1599 41 1 4.4454 7.2213 -3.6018 42 1 6.0170 6.3853 -3.4606 43 1 5.9236 2.6171 1.0280 44 1 5.9714 1.7296 -0.5142 45 1 5.8756 3.5070 -0.5128 46 1 4.0207 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968788405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:02 Heat of formation + Delta-G solvation = -34.830866 kcal Electronic energy + Delta-G solvation = -26164.693224 eV Core-core repulsion = 22440.837213 eV Total energy + Delta-G solvation = -3723.856011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.61863 -39.75360 -38.17222 -37.10517 -34.42618 -32.86723 -32.41732 -31.46378 -29.49665 -29.03045 -27.76031 -26.78804 -26.22662 -23.54394 -22.94734 -22.34143 -21.02442 -20.20895 -19.06266 -17.94587 -17.57396 -17.03633 -16.80499 -15.99805 -15.95026 -15.69093 -14.91042 -14.75511 -14.57571 -14.24055 -13.91875 -13.73685 -13.55501 -13.42505 -13.30256 -12.83484 -12.60245 -12.45016 -12.36483 -12.20084 -12.07347 -11.82198 -11.79584 -11.49691 -11.10165 -11.07564 -10.96155 -10.76542 -10.63994 -10.33985 -10.05367 -9.73541 -9.25613 -8.99308 -8.91987 -8.46081 -8.22877 -7.13672 -6.16963 -3.18977 1.18187 1.24694 2.74888 3.01735 3.09364 3.48407 3.53043 3.61014 3.67039 4.52588 4.54401 4.61191 4.67245 4.71106 4.77911 4.83825 4.94917 5.00945 5.05597 5.12663 5.16153 5.23585 5.28616 5.32373 5.43044 5.48708 5.49416 5.54394 5.59876 5.68624 5.79565 5.85821 5.95377 5.96564 6.12958 6.15322 6.20378 6.27764 6.47111 6.50084 6.51134 6.60102 6.80141 7.18690 7.67629 7.74047 8.30265 8.68213 9.12721 9.99280 10.12810 11.30957 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.002223 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.725467 B =12590.074050 C =12721.584584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.063 4.063 6 C -0.100 4.100 7 C -0.094 4.094 8 C 0.525 3.475 9 O -0.535 6.535 10 N -0.615 5.615 11 C 0.098 3.902 12 C -0.153 4.153 13 C 0.177 3.823 14 H 0.065 0.935 15 N -0.728 5.728 16 C -0.336 4.336 17 H 0.067 0.933 18 C -0.043 4.043 19 N -0.941 5.941 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.101 3.899 25 C -0.027 4.027 26 C -0.118 4.118 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.369 0.631 40 H 0.256 0.744 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 -12.681 16.863 26.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.231 4.231 5 C -0.082 4.082 6 C -0.101 4.101 7 C -0.134 4.134 8 C 0.313 3.687 9 O -0.411 6.411 10 N -0.350 5.350 11 C -0.026 4.026 12 C -0.195 4.195 13 C 0.065 3.935 14 H 0.083 0.917 15 N -0.370 5.370 16 C -0.467 4.467 17 H 0.085 0.915 18 C -0.241 4.241 19 N -0.585 5.585 20 Si 0.915 3.085 21 H -0.222 1.222 22 H -0.221 1.221 23 H -0.213 1.213 24 C -0.022 4.022 25 C -0.028 4.028 26 C -0.175 4.175 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.203 0.797 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.164 -12.305 15.581 24.982 hybrid contribution -1.435 -0.823 0.776 1.827 sum -16.599 -13.128 16.356 26.747 Atomic orbital electron populations 1.23036 0.78516 1.03793 1.01373 1.86055 1.21302 1.27107 1.88856 1.18966 0.92263 0.84023 0.96511 1.21110 0.99799 0.92252 1.09977 1.20735 0.93627 0.97090 0.96712 1.19057 0.93242 0.93331 1.04461 1.20593 1.02327 0.95482 0.94951 1.20175 0.77603 0.79841 0.91102 1.90726 1.53243 1.50815 1.46350 1.48523 1.58358 1.18880 1.09240 1.22413 0.97894 0.90814 0.91442 1.23534 0.97010 0.99792 0.99138 1.21120 0.89936 0.93180 0.89240 0.91749 1.42378 1.34188 1.06524 1.53885 1.20034 1.14307 0.85190 1.27137 0.91494 1.25828 0.95906 1.05662 0.96683 1.70852 1.43471 0.98249 1.45944 0.83183 0.76418 0.73426 0.75523 1.22237 1.22080 1.21349 1.22258 0.99396 0.96664 0.83874 1.19480 0.95973 0.91582 0.95728 1.20860 0.90798 1.03544 1.02284 1.20207 0.91269 0.97959 1.07585 0.92624 0.88344 0.92721 0.85608 0.85896 0.88049 0.88295 0.91210 0.91547 0.90769 0.90474 0.79710 0.93244 0.91712 0.91446 0.90727 0.91067 0.91221 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.45 10.50 -19.43 -0.20 -3.66 16 3 C 0.13 1.50 6.69 -39.21 -0.26 1.24 16 4 C -0.21 -2.30 9.04 -39.43 -0.36 -2.65 16 5 C -0.06 -0.71 9.67 -39.60 -0.38 -1.10 16 6 C -0.10 -1.21 4.37 -104.60 -0.46 -1.67 16 7 C -0.09 -1.03 4.15 -29.03 -0.12 -1.15 16 8 C 0.52 7.96 7.06 -10.98 -0.08 7.88 16 9 O -0.53 -10.28 16.36 5.56 0.09 -10.19 16 10 N -0.62 -9.26 3.33 -170.52 -0.57 -9.83 16 11 C 0.10 1.20 6.69 -2.53 -0.02 1.19 16 12 C -0.15 -2.44 6.77 -24.58 -0.17 -2.60 16 13 C 0.18 3.37 3.59 -66.10 -0.24 3.13 16 14 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 15 N -0.73 -17.66 5.25 -51.66 -0.27 -17.94 16 16 C -0.34 -9.12 9.98 -15.06 -0.15 -9.27 16 17 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 18 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 19 N -0.94 -28.75 13.70 55.49 0.76 -27.99 16 20 Si 1.08 25.42 29.92 -169.99 -5.09 20.33 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.10 1.80 6.61 -3.06 -0.02 1.78 16 25 C -0.03 -0.33 5.88 -104.65 -0.62 -0.95 16 26 C -0.12 -1.25 9.21 36.01 0.33 -0.92 16 27 C -0.15 -1.82 9.64 -39.43 -0.38 -2.20 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 31 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.10 0.93 6.69 -51.93 -0.35 0.58 16 34 H 0.10 0.85 8.05 -51.93 -0.42 0.43 16 35 H 0.07 0.69 7.47 -51.93 -0.39 0.30 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.37 9.39 6.34 -40.82 -0.26 9.13 16 40 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.32 7.69 -51.93 -0.40 0.92 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 45 H 0.07 0.83 6.15 -51.93 -0.32 0.51 16 46 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -34.37 374.82 -8.61 -42.98 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.96 Total: 8.07 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.02 Total: -7.43 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.08 Total: -55.75 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.11 Total: -13.85 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.33 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.37 -8.61 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968788405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.144 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds