Wall clock time and date at job start Tue Mar 31 2020 12:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99546 * 2 1 4 4 C 1.38751 * 120.06263 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94942 * 179.68571 * 4 3 2 6 6 C 1.38296 * 120.05072 * 0.56241 * 5 4 3 7 7 C 1.50698 * 119.94118 * 179.72673 * 6 5 4 8 8 C 1.50704 * 109.47177 * 264.73010 * 7 6 5 9 9 O 1.21276 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99540 * 180.02562 * 8 7 6 11 11 C 1.47422 * 125.65574 * 0.02562 * 10 8 7 12 12 C 1.54904 * 104.83588 * 155.83543 * 11 10 8 13 13 C 1.55163 * 101.58089 * 37.01349 * 12 11 10 14 14 H 1.09002 * 110.71868 * 83.03475 * 13 12 11 15 15 N 1.46490 * 110.71993 * 206.13410 * 13 12 11 16 16 C 1.36935 * 120.00121 * 273.54103 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46685 * 269.99637 * 20 18 16 22 22 H 1.48494 * 109.47357 * 29.99716 * 20 18 16 23 23 H 1.48502 * 109.47120 * 150.00435 * 20 18 16 24 24 C 1.47030 * 125.64522 * 179.97438 * 10 8 7 25 25 C 1.38240 * 120.11218 * 359.45735 * 6 5 4 26 26 C 1.50703 * 119.97046 * 180.26812 * 25 6 5 27 27 C 1.38166 * 120.05582 * 0.24974 * 25 6 5 28 28 H 1.08999 * 109.46892 * 59.99975 * 1 2 3 29 29 H 1.08994 * 109.47111 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 300.00334 * 1 2 3 31 31 H 1.08003 * 120.02248 * 359.95908 * 4 3 2 32 32 H 1.07997 * 119.97692 * 180.31427 * 5 4 3 33 33 H 1.08997 * 109.47077 * 144.72712 * 7 6 5 34 34 H 1.08997 * 109.47174 * 24.73246 * 7 6 5 35 35 H 1.09000 * 110.36241 * 36.99895 * 11 10 8 36 36 H 1.09002 * 110.37154 * 274.68108 * 11 10 8 37 37 H 1.08994 * 111.00996 * 278.93912 * 12 11 10 38 38 H 1.09004 * 111.00310 * 155.08595 * 12 11 10 39 39 H 0.97000 * 120.00577 * 93.54703 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.08999 * 109.88565 * 61.67072 * 24 10 8 42 42 H 1.08999 * 109.87582 * 300.50826 * 24 10 8 43 43 H 1.09001 * 109.46303 * 90.00364 * 26 25 6 44 44 H 1.08997 * 109.46717 * 209.99664 * 26 25 6 45 45 H 1.08998 * 109.47163 * 330.00632 * 26 25 6 46 46 H 1.08006 * 120.02456 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6048 0.0071 6 6 3.3019 3.6759 0.0014 7 6 3.9860 5.0186 0.0023 8 6 4.3242 5.4111 -1.4128 9 8 4.0376 4.6733 -2.3317 10 7 4.9453 6.5820 -1.6572 11 6 5.3500 7.5688 -0.6395 12 6 6.5086 8.3615 -1.2943 13 6 6.0352 8.4435 -2.7697 14 1 5.3359 9.2686 -2.9049 15 7 7.1791 8.5825 -3.6741 16 6 7.6865 9.8239 -3.9506 17 1 7.2436 10.7006 -3.5016 18 6 8.7702 9.9557 -4.8081 19 7 9.3097 8.8873 -5.3558 20 14 9.4627 11.6492 -5.1847 21 1 8.7717 12.2137 -6.3719 22 1 9.2499 12.5419 -4.0173 23 1 10.9168 11.5383 -5.4647 24 6 5.3325 7.0862 -2.9829 25 6 4.0559 2.5172 0.0004 26 6 5.5608 2.5984 0.0003 27 6 3.4311 1.2849 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2128 2.3204 0.0003 32 1 1.3339 4.5114 0.0127 33 1 4.9010 4.9598 0.5917 34 1 3.3211 5.7648 0.4373 35 1 5.6977 7.0636 0.2616 36 1 4.5195 8.2348 -0.4054 37 1 7.4489 7.8158 -1.2155 38 1 6.5980 9.3558 -0.8568 39 1 7.5772 7.7951 -4.0772 40 1 8.9503 8.0079 -5.1599 41 1 4.4454 7.2213 -3.6018 42 1 6.0170 6.3853 -3.4606 43 1 5.9236 2.6171 1.0280 44 1 5.9714 1.7296 -0.5142 45 1 5.8756 3.5070 -0.5128 46 1 4.0207 0.3800 -0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968788405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:01 Heat of formation + Delta-G solvation = -56.816632 kcal Electronic energy + Delta-G solvation = -26165.646598 eV Core-core repulsion = 22440.837213 eV Total energy + Delta-G solvation = -3724.809385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.55153 -40.81776 -39.18312 -38.30995 -36.23613 -33.79424 -33.45644 -32.93725 -30.93853 -29.99258 -28.98950 -27.49605 -27.25081 -25.46065 -24.22834 -23.21616 -21.98399 -21.60342 -20.20600 -19.52524 -18.70491 -18.21270 -17.69946 -17.18151 -16.87169 -16.67211 -16.44346 -15.96576 -15.81038 -15.48567 -15.14987 -14.78083 -14.73912 -14.36608 -14.33113 -14.20253 -13.80326 -13.42406 -13.29856 -13.18783 -13.08302 -12.94796 -12.77392 -12.72582 -12.45989 -12.39652 -12.29464 -11.85781 -11.83565 -11.79943 -11.72161 -11.30257 -10.96218 -10.93916 -9.75471 -9.71958 -9.16078 -9.06104 -8.39598 -5.35544 0.34433 0.39183 1.59871 1.60156 1.70793 1.84398 1.92746 2.35113 2.71480 2.74663 3.37325 3.54487 3.63722 3.69539 3.78402 3.84615 3.93071 4.05358 4.14357 4.18380 4.26393 4.32556 4.34468 4.36959 4.39902 4.42905 4.51982 4.62006 4.64232 4.71213 4.73800 4.78325 4.81641 4.93267 4.99424 5.11840 5.15371 5.20806 5.31322 5.37317 5.38887 5.61040 5.64759 5.80438 6.43131 6.46700 6.52667 7.04720 7.12915 7.93923 8.07181 9.11736 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033178 B = 0.002223 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.725467 B =12590.074050 C =12721.584584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.116 3.884 4 C -0.218 4.218 5 C -0.071 4.071 6 C -0.119 4.119 7 C -0.083 4.083 8 C 0.523 3.477 9 O -0.584 6.584 10 N -0.615 5.615 11 C 0.105 3.895 12 C -0.145 4.145 13 C 0.169 3.831 14 H 0.067 0.933 15 N -0.745 5.745 16 C -0.326 4.326 17 H 0.076 0.924 18 C -0.108 4.108 19 N -0.978 5.978 20 Si 1.132 2.868 21 H -0.287 1.287 22 H -0.267 1.267 23 H -0.297 1.297 24 C 0.111 3.889 25 C -0.041 4.041 26 C -0.116 4.116 27 C -0.172 4.172 28 H 0.059 0.941 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.357 0.643 40 H 0.242 0.758 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.054 0.946 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.845 -11.559 19.553 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.071 3.929 4 C -0.236 4.236 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.313 3.687 9 O -0.463 6.463 10 N -0.349 5.349 11 C -0.016 4.016 12 C -0.185 4.185 13 C 0.060 3.940 14 H 0.085 0.915 15 N -0.386 5.386 16 C -0.457 4.457 17 H 0.094 0.906 18 C -0.299 4.299 19 N -0.626 5.626 20 Si 0.956 3.044 21 H -0.214 1.214 22 H -0.192 1.192 23 H -0.223 1.223 24 C -0.014 4.014 25 C -0.041 4.041 26 C -0.172 4.172 27 C -0.191 4.191 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.189 0.811 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.116 0.884 44 H 0.088 0.912 45 H 0.073 0.927 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.915 -11.173 18.347 27.342 hybrid contribution -1.040 -1.267 -0.040 1.640 sum -17.955 -12.440 18.308 28.501 Atomic orbital electron populations 1.23332 0.76486 1.05543 1.02195 1.86032 1.23487 1.26901 1.88746 1.19174 0.92480 0.84799 0.96418 1.21402 1.01019 0.91849 1.09371 1.21071 0.93685 0.98065 0.96038 1.19286 0.93834 0.93746 1.05092 1.20636 1.03978 0.95685 0.91862 1.21005 0.76353 0.78830 0.92479 1.90707 1.55193 1.52154 1.48290 1.48606 1.58248 1.19573 1.08484 1.22589 0.97346 0.90431 0.91267 1.23337 0.97631 1.00959 0.96607 1.21335 0.88566 0.93763 0.90377 0.91519 1.42590 1.35605 1.05314 1.55116 1.20396 1.13384 0.86409 1.25524 0.90644 1.27265 0.97134 1.08140 0.97348 1.70971 1.44973 0.98346 1.48291 0.82576 0.75133 0.70150 0.76516 1.21430 1.19159 1.22330 1.21913 0.98314 0.95491 0.85657 1.19727 0.96718 0.91881 0.95802 1.20863 0.90178 1.02656 1.03530 1.20408 0.91925 0.98314 1.08427 0.92252 0.86284 0.91347 0.83385 0.83872 0.85830 0.84978 0.87535 0.88466 0.92697 0.89320 0.81052 0.94722 0.92403 0.94210 0.88356 0.91234 0.92707 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.05 10.50 -92.43 -0.97 -8.02 16 3 C 0.12 2.67 6.69 22.51 0.15 2.82 16 4 C -0.22 -4.36 9.04 22.36 0.20 -4.16 16 5 C -0.07 -1.44 9.67 22.26 0.22 -1.23 16 6 C -0.12 -2.66 4.37 -19.85 -0.09 -2.75 16 7 C -0.08 -1.55 4.15 29.10 0.12 -1.42 16 8 C 0.52 15.04 7.06 87.66 0.62 15.66 16 9 O -0.58 -22.56 16.36 -3.02 -0.05 -22.60 16 10 N -0.62 -17.42 3.33 -811.80 -2.70 -20.12 16 11 C 0.11 2.19 6.69 86.85 0.58 2.77 16 12 C -0.14 -4.29 6.77 31.99 0.22 -4.08 16 13 C 0.17 6.36 3.59 46.18 0.17 6.53 16 14 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 15 N -0.74 -36.84 5.25 -317.34 -1.67 -38.51 16 16 C -0.33 -17.72 9.98 84.03 0.84 -16.88 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.11 -6.20 5.50 84.86 0.47 -5.73 16 19 N -0.98 -61.53 13.70 21.65 0.30 -61.23 16 20 Si 1.13 51.09 29.92 68.60 2.05 53.15 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 23 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 24 C 0.11 3.97 6.61 86.73 0.57 4.55 16 25 C -0.04 -0.97 5.88 -19.88 -0.12 -1.08 16 26 C -0.12 -2.35 9.21 71.24 0.66 -1.70 16 27 C -0.17 -4.11 9.64 22.37 0.22 -3.90 16 28 H 0.06 0.65 7.66 -2.39 -0.02 0.63 16 29 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 31 H 0.15 2.13 6.30 -2.91 -0.02 2.12 16 32 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.12 1.78 6.69 -2.39 -0.02 1.76 16 34 H 0.13 1.61 8.05 -2.39 -0.02 1.60 16 35 H 0.11 1.54 7.47 -2.39 -0.02 1.52 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.36 19.07 6.34 -92.71 -0.59 18.48 16 40 H 0.24 15.33 6.77 -92.71 -0.63 14.71 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 1.64 7.69 -2.39 -0.02 1.62 16 43 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.07 1.39 8.08 -2.39 -0.02 1.37 16 45 H 0.05 1.27 6.15 -2.39 -0.01 1.25 16 46 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -77.68 374.82 3.43 -74.25 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.54 Total: 32.36 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 5.93 Total: -9.26 kcal Atomic # 7 Polarization: -115.79 SS G_CDS: -4.07 Total: -119.86 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.02 Total: -30.63 kcal Atomic # 14 Polarization: 51.09 SS G_CDS: 2.05 Total: 53.15 kcal Total: -77.68 3.43 -74.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968788405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.431 kcal (2) G-P(sol) polarization free energy of solvation -77.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds