Wall clock time and date at job start Tue Mar 31 2020 12:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48495 * 109.47402 * 274.98545 * 3 2 1 5 5 H 1.48494 * 109.47200 * 34.99196 * 3 2 1 6 6 H 1.48503 * 109.46821 * 154.98805 * 3 2 1 7 7 C 1.38809 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00003 * 187.30070 * 7 2 1 9 9 N 1.36939 * 119.99899 * 7.02459 * 7 2 1 10 10 C 1.48241 * 125.78312 * 355.93329 * 9 7 2 11 11 C 1.52336 * 105.86474 * 176.79974 * 10 9 7 12 12 H 1.09002 * 109.88148 * 272.31550 * 11 10 9 13 13 C 1.51449 * 117.44695 * 145.79235 * 11 10 9 14 14 C 1.51885 * 108.04500 * 182.38854 * 13 11 10 15 15 C 1.52524 * 112.21234 * 55.83505 * 14 13 11 16 16 H 1.09002 * 109.04024 * 186.06870 * 15 14 13 17 17 N 1.46506 * 109.03647 * 67.20747 * 15 14 13 18 18 C 1.34777 * 119.99798 * 82.81061 * 17 15 14 19 19 O 1.21283 * 119.99790 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00129 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.41385 * 126.57916 * 90.00294 * 21 20 18 23 23 C 1.34508 * 106.83958 * 179.97438 * 22 21 20 24 24 O 1.34307 * 108.42282 * 359.97438 * 23 22 21 25 25 C 1.34302 * 109.47352 * 359.77458 * 24 23 22 26 26 C 1.53820 * 111.69951 * 306.64217 * 15 14 13 27 27 C 1.51614 * 107.01964 * 57.53178 * 26 15 14 28 28 H 1.08995 * 110.50090 * 55.19749 * 27 26 15 29 29 C 1.48656 * 125.78346 * 175.62191 * 9 7 2 30 30 H 0.97000 * 120.00434 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.16842 * 295.89201 * 10 9 7 32 32 H 1.08995 * 110.17773 * 57.69802 * 10 9 7 33 33 H 1.08994 * 109.93565 * 300.62480 * 13 11 10 34 34 H 1.09002 * 109.93837 * 61.86051 * 13 11 10 35 35 H 1.09002 * 108.22181 * 295.47461 * 14 13 11 36 36 H 1.09002 * 109.25443 * 176.89010 * 14 13 11 37 37 H 0.96996 * 120.00033 * 262.80741 * 17 15 14 38 38 H 1.08999 * 109.46938 * 299.99634 * 20 18 17 39 39 H 1.09001 * 109.47133 * 59.99874 * 20 18 17 40 40 H 1.07996 * 126.57742 * 359.92101 * 22 21 20 41 41 H 1.08002 * 125.78852 * 179.97438 * 23 22 21 42 42 H 1.07997 * 125.78868 * 180.23220 * 25 24 23 43 43 H 1.09006 * 109.93609 * 298.15789 * 26 15 14 44 44 H 1.08994 * 109.94436 * 176.91705 * 26 15 14 45 45 H 1.09003 * 110.62761 * 274.12526 * 29 9 7 46 46 H 1.08995 * 110.62849 * 37.14525 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0837 -1.2059 0.1183 9 7 1.3333 -2.3835 -0.1461 10 6 -0.1392 -2.5345 -0.2267 11 6 -0.3933 -4.0175 -0.4650 12 1 -0.3749 -4.2296 -1.5341 13 6 -1.6339 -4.6223 0.1586 14 6 -1.6451 -6.1070 -0.1611 15 6 -0.3703 -6.8059 0.3001 16 1 -0.3849 -7.8386 -0.0484 17 7 -0.3241 -6.7982 1.7644 18 6 -0.9933 -7.7354 2.4646 19 8 -1.6342 -8.5847 1.8824 20 6 -0.9463 -7.7272 3.9708 21 6 -1.7715 -8.8694 4.5053 22 6 -1.3182 -10.1803 4.7793 23 6 -2.3772 -10.8706 5.2388 24 8 -3.4417 -10.0519 5.2581 25 6 -3.0790 -8.8355 4.8193 26 6 0.8887 -6.1102 -0.2451 27 6 0.8390 -4.6699 0.2259 28 1 0.7402 -4.6262 1.3105 29 6 1.9508 -3.7312 -0.2566 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6010 -2.2198 0.7091 32 1 -0.5324 -1.9477 -1.0567 33 1 -1.6019 -4.5019 1.2414 34 1 -2.5249 -4.1404 -0.2439 35 1 -1.7434 -6.2225 -1.2405 36 1 -2.5020 -6.5730 0.3255 37 1 0.1882 -6.1187 2.2299 38 1 0.0860 -7.8379 4.3027 39 1 -1.3482 -6.7844 4.3417 40 1 -0.3146 -10.5555 4.6446 41 1 -2.3724 -11.9075 5.5410 42 1 -3.7277 -7.9766 4.7308 43 1 0.8904 -6.1453 -1.3346 44 1 1.7816 -6.5985 0.1451 45 1 2.2174 -3.9478 -1.2911 46 1 2.8248 -3.8074 0.3902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979665892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:26 Heat of formation + Delta-G solvation = -1.092231 kcal Electronic energy + Delta-G solvation = -26909.869926 eV Core-core repulsion = 23187.476932 eV Total energy + Delta-G solvation = -3722.392994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.68779 -40.33521 -38.70529 -35.68345 -34.09392 -33.24023 -31.91566 -30.97619 -30.29332 -28.98673 -27.75970 -26.23095 -25.01920 -22.02124 -21.85224 -21.73622 -20.62636 -20.23412 -19.76850 -18.89798 -17.69488 -17.12705 -16.73689 -15.93548 -15.83302 -15.45708 -14.92112 -14.80098 -14.45886 -14.19098 -13.82861 -13.61587 -13.25082 -13.08480 -12.94651 -12.90921 -12.51456 -12.24746 -12.18190 -11.96813 -11.68044 -11.41720 -11.20592 -11.03900 -10.82739 -10.77663 -10.62217 -10.08726 -10.02829 -9.90679 -9.83410 -9.63573 -9.50373 -9.37960 -8.89132 -8.67496 -8.58412 -6.82812 -5.71304 -3.03037 1.63430 2.38564 2.67460 2.99756 3.35864 3.39888 3.45176 3.47065 4.48914 4.56104 4.61382 4.77276 4.81911 4.89739 5.02646 5.05516 5.21795 5.29945 5.31304 5.36070 5.51399 5.52553 5.64012 5.70392 5.77532 5.83587 5.84450 5.99070 5.99647 6.14676 6.16076 6.26047 6.27563 6.32375 6.38074 6.51870 6.59280 6.63729 6.66043 6.83539 6.95700 6.99554 7.55392 7.56479 7.65362 7.83287 8.23164 8.27529 9.20542 9.81595 10.49796 11.40950 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002615 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.697340 B =10703.346422 C =11047.274640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.188 3.812 11 C -0.115 4.115 12 H 0.062 0.938 13 C -0.098 4.098 14 C -0.126 4.126 15 C 0.152 3.848 16 H 0.080 0.920 17 N -0.722 5.722 18 C 0.513 3.487 19 O -0.538 6.538 20 C -0.074 4.074 21 C -0.161 4.161 22 C -0.199 4.199 23 C -0.047 4.047 24 O -0.178 6.178 25 C -0.027 4.027 26 C -0.111 4.111 27 C -0.108 4.108 28 H 0.070 0.930 29 C 0.143 3.857 30 H 0.251 0.749 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.401 0.599 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.145 0.855 41 H 0.200 0.800 42 H 0.200 0.800 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.021 0.979 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -18.879 7.877 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.064 3.936 11 C -0.134 4.134 12 H 0.081 0.919 13 C -0.136 4.136 14 C -0.164 4.164 15 C 0.048 3.952 16 H 0.098 0.902 17 N -0.376 5.376 18 C 0.299 3.701 19 O -0.415 6.415 20 C -0.114 4.114 21 C -0.163 4.163 22 C -0.218 4.218 23 C -0.114 4.114 24 O -0.073 6.073 25 C -0.095 4.095 26 C -0.149 4.149 27 C -0.127 4.127 28 H 0.088 0.912 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.237 0.763 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.163 0.837 41 H 0.217 0.783 42 H 0.217 0.783 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.982 -19.336 7.558 21.140 hybrid contribution 0.928 1.353 0.079 1.643 sum -3.054 -17.983 7.638 19.775 Atomic orbital electron populations 1.69978 1.04862 1.24930 1.56999 1.24792 0.95685 0.97563 1.02474 0.86146 0.78660 0.83782 0.77483 1.21694 1.21834 1.20700 1.19066 0.91078 0.82680 1.42665 0.90520 1.45097 1.01561 1.00625 1.86375 1.20807 0.84198 0.88162 1.00442 1.22129 0.93723 0.98791 0.98797 0.91931 1.20849 0.98245 0.93884 1.00595 1.21564 0.97281 0.96303 1.01256 1.21011 0.95177 0.99871 0.79141 0.90155 1.46272 1.51963 1.31762 1.07558 1.20535 0.79007 0.81023 0.89537 1.90698 1.41570 1.37563 1.71637 1.20022 1.01512 0.97662 0.92206 1.19793 0.94629 0.95725 1.06121 1.21660 1.00533 0.93891 1.05711 1.23929 0.84628 0.96684 1.06159 1.84057 1.36889 1.19968 1.66424 1.23805 0.95787 0.87131 1.02779 1.21624 0.96095 0.95794 1.01382 1.22079 0.98137 0.92926 0.99577 0.91190 1.21320 0.93868 0.85957 0.97147 0.93840 0.94456 0.93334 0.92424 0.91929 0.91667 0.91903 0.76272 0.87978 0.87945 0.83708 0.78315 0.78324 0.90321 0.91576 0.96124 0.94395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.41 55.49 0.58 -26.26 16 2 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.25 10.29 -15.06 -0.15 -6.40 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 9 N -0.61 -15.20 3.45 -170.27 -0.59 -15.79 16 10 C 0.19 4.42 5.07 -3.42 -0.02 4.41 16 11 C -0.12 -2.02 2.29 -90.35 -0.21 -2.23 16 12 H 0.06 1.10 7.97 -51.93 -0.41 0.69 16 13 C -0.10 -1.47 5.49 -28.08 -0.15 -1.62 16 14 C -0.13 -1.66 5.34 -27.54 -0.15 -1.81 16 15 C 0.15 1.89 2.68 -67.74 -0.18 1.71 16 16 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 17 N -0.72 -8.27 4.67 -53.62 -0.25 -8.52 16 18 C 0.51 6.31 7.68 -10.99 -0.08 6.23 16 19 O -0.54 -8.67 15.57 5.56 0.09 -8.59 16 20 C -0.07 -0.69 6.22 -29.04 -0.18 -0.87 16 21 C -0.16 -1.73 4.66 -104.74 -0.49 -2.22 16 22 C -0.20 -2.01 10.87 -39.70 -0.43 -2.45 16 23 C -0.05 -0.43 12.09 29.41 0.36 -0.07 16 24 O -0.18 -1.93 10.65 5.70 0.06 -1.87 16 25 C -0.03 -0.28 12.01 29.41 0.35 0.07 16 26 C -0.11 -1.38 5.41 -27.01 -0.15 -1.53 16 27 C -0.11 -1.70 2.40 -89.78 -0.22 -1.91 16 28 H 0.07 1.10 6.27 -51.93 -0.33 0.77 16 29 C 0.14 2.80 6.94 -2.69 -0.02 2.78 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.97 7.65 -51.93 -0.40 0.57 16 32 H 0.05 1.29 7.27 -51.93 -0.38 0.92 16 33 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.88 7.93 -51.93 -0.41 0.47 16 37 H 0.40 4.14 6.82 -40.82 -0.28 3.86 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 41 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -33.56 365.26 -8.65 -42.21 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.20 Total: 2.63 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.81 Total: -6.26 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.26 Total: -50.58 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.15 Total: -10.45 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.56 -8.65 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979665892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds