Wall clock time and date at job start Tue Mar 31 2020 12:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99629 * 2 1 4 4 H 1.48495 * 109.47402 * 274.98545 * 3 2 1 5 5 H 1.48494 * 109.47200 * 34.99196 * 3 2 1 6 6 H 1.48503 * 109.46821 * 154.98805 * 3 2 1 7 7 C 1.38809 * 120.00196 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00003 * 187.30070 * 7 2 1 9 9 N 1.36939 * 119.99899 * 7.02459 * 7 2 1 10 10 C 1.48241 * 125.78312 * 355.93329 * 9 7 2 11 11 C 1.52336 * 105.86474 * 176.79974 * 10 9 7 12 12 H 1.09002 * 109.88148 * 272.31550 * 11 10 9 13 13 C 1.51449 * 117.44695 * 145.79235 * 11 10 9 14 14 C 1.51885 * 108.04500 * 182.38854 * 13 11 10 15 15 C 1.52524 * 112.21234 * 55.83505 * 14 13 11 16 16 H 1.09002 * 109.04024 * 186.06870 * 15 14 13 17 17 N 1.46506 * 109.03647 * 67.20747 * 15 14 13 18 18 C 1.34777 * 119.99798 * 82.81061 * 17 15 14 19 19 O 1.21283 * 119.99790 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00129 * 180.02562 * 18 17 15 21 21 C 1.50702 * 109.47115 * 179.97438 * 20 18 17 22 22 C 1.41385 * 126.57916 * 90.00294 * 21 20 18 23 23 C 1.34508 * 106.83958 * 179.97438 * 22 21 20 24 24 O 1.34307 * 108.42282 * 359.97438 * 23 22 21 25 25 C 1.34302 * 109.47352 * 359.77458 * 24 23 22 26 26 C 1.53820 * 111.69951 * 306.64217 * 15 14 13 27 27 C 1.51614 * 107.01964 * 57.53178 * 26 15 14 28 28 H 1.08995 * 110.50090 * 55.19749 * 27 26 15 29 29 C 1.48656 * 125.78346 * 175.62191 * 9 7 2 30 30 H 0.97000 * 120.00434 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.16842 * 295.89201 * 10 9 7 32 32 H 1.08995 * 110.17773 * 57.69802 * 10 9 7 33 33 H 1.08994 * 109.93565 * 300.62480 * 13 11 10 34 34 H 1.09002 * 109.93837 * 61.86051 * 13 11 10 35 35 H 1.09002 * 108.22181 * 295.47461 * 14 13 11 36 36 H 1.09002 * 109.25443 * 176.89010 * 14 13 11 37 37 H 0.96996 * 120.00033 * 262.80741 * 17 15 14 38 38 H 1.08999 * 109.46938 * 299.99634 * 20 18 17 39 39 H 1.09001 * 109.47133 * 59.99874 * 20 18 17 40 40 H 1.07996 * 126.57742 * 359.92101 * 22 21 20 41 41 H 1.08002 * 125.78852 * 179.97438 * 23 22 21 42 42 H 1.07997 * 125.78868 * 180.23220 * 25 24 23 43 43 H 1.09006 * 109.93609 * 298.15789 * 26 15 14 44 44 H 1.08994 * 109.94436 * 176.91705 * 26 15 14 45 45 H 1.09003 * 110.62761 * 274.12526 * 29 9 7 46 46 H 1.08995 * 110.62849 * 37.14525 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5043 2.6199 0.8029 6 1 3.5964 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0837 -1.2059 0.1183 9 7 1.3333 -2.3835 -0.1461 10 6 -0.1392 -2.5345 -0.2267 11 6 -0.3933 -4.0175 -0.4650 12 1 -0.3749 -4.2296 -1.5341 13 6 -1.6339 -4.6223 0.1586 14 6 -1.6451 -6.1070 -0.1611 15 6 -0.3703 -6.8059 0.3001 16 1 -0.3849 -7.8386 -0.0484 17 7 -0.3241 -6.7982 1.7644 18 6 -0.9933 -7.7354 2.4646 19 8 -1.6342 -8.5847 1.8824 20 6 -0.9463 -7.7272 3.9708 21 6 -1.7715 -8.8694 4.5053 22 6 -1.3182 -10.1803 4.7793 23 6 -2.3772 -10.8706 5.2388 24 8 -3.4417 -10.0519 5.2581 25 6 -3.0790 -8.8355 4.8193 26 6 0.8887 -6.1102 -0.2451 27 6 0.8390 -4.6699 0.2259 28 1 0.7402 -4.6262 1.3105 29 6 1.9508 -3.7312 -0.2566 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6010 -2.2198 0.7091 32 1 -0.5324 -1.9477 -1.0567 33 1 -1.6019 -4.5019 1.2414 34 1 -2.5249 -4.1404 -0.2439 35 1 -1.7434 -6.2225 -1.2405 36 1 -2.5020 -6.5730 0.3255 37 1 0.1882 -6.1187 2.2299 38 1 0.0860 -7.8379 4.3027 39 1 -1.3482 -6.7844 4.3417 40 1 -0.3146 -10.5555 4.6446 41 1 -2.3724 -11.9075 5.5410 42 1 -3.7277 -7.9766 4.7308 43 1 0.8904 -6.1453 -1.3346 44 1 1.7816 -6.5985 0.1451 45 1 2.2174 -3.9478 -1.2911 46 1 2.8248 -3.8074 0.3902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979665892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:25 Heat of formation + Delta-G solvation = -21.927882 kcal Electronic energy + Delta-G solvation = -26910.773428 eV Core-core repulsion = 23187.476932 eV Total energy + Delta-G solvation = -3723.296495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40779 -41.48155 -39.93052 -37.13121 -34.88034 -34.70643 -33.51444 -32.13356 -31.26192 -30.47175 -28.69549 -27.69336 -26.76861 -23.53723 -22.80563 -22.44744 -21.90354 -21.42922 -20.99908 -20.09499 -18.74993 -18.47518 -17.99955 -17.01687 -16.72280 -16.66314 -16.41515 -15.71948 -15.69766 -15.54151 -15.22645 -14.85373 -14.54712 -14.38896 -13.99098 -13.68421 -13.64006 -13.57603 -13.42364 -13.30930 -12.94072 -12.83108 -12.66644 -12.45679 -12.39581 -12.37099 -11.94115 -11.87835 -11.72232 -11.35532 -11.01402 -10.98170 -10.79397 -10.64065 -10.46694 -9.92983 -9.39317 -8.86480 -7.83273 -5.16450 0.91440 1.46111 1.48018 1.56531 1.64008 1.75127 2.33480 2.48513 2.50699 3.35129 3.55544 3.65915 3.76928 3.83974 3.86274 3.98200 4.09358 4.16128 4.21552 4.38813 4.48526 4.53392 4.59461 4.62989 4.67196 4.73238 4.78531 4.82517 4.88908 4.97894 5.03796 5.11811 5.14496 5.17746 5.22914 5.28559 5.33544 5.40120 5.51082 5.59063 5.62688 5.65557 5.77014 5.83831 6.20117 6.23851 6.65661 7.11015 7.35905 7.78700 8.46182 9.27719 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.002615 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.697340 B =10703.346422 C =11047.274640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.633 5.633 10 C 0.198 3.802 11 C -0.105 4.105 12 H 0.065 0.935 13 C -0.089 4.089 14 C -0.117 4.117 15 C 0.157 3.843 16 H 0.081 0.919 17 N -0.716 5.716 18 C 0.514 3.486 19 O -0.578 6.578 20 C -0.069 4.069 21 C -0.179 4.179 22 C -0.221 4.221 23 C -0.047 4.047 24 O -0.193 6.193 25 C -0.044 4.044 26 C -0.098 4.098 27 C -0.088 4.088 28 H 0.074 0.926 29 C 0.136 3.864 30 H 0.245 0.755 31 H 0.003 0.997 32 H 0.005 0.995 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.157 0.843 41 H 0.233 0.767 42 H 0.217 0.783 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.027 0.973 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 -20.525 8.460 22.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.360 5.360 10 C 0.074 3.926 11 C -0.124 4.124 12 H 0.084 0.916 13 C -0.127 4.127 14 C -0.155 4.155 15 C 0.052 3.948 16 H 0.099 0.901 17 N -0.369 5.369 18 C 0.302 3.698 19 O -0.458 6.458 20 C -0.109 4.109 21 C -0.181 4.181 22 C -0.240 4.240 23 C -0.114 4.114 24 O -0.089 6.089 25 C -0.111 4.111 26 C -0.136 4.136 27 C -0.107 4.107 28 H 0.092 0.908 29 C 0.012 3.988 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.246 0.754 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.174 0.826 41 H 0.249 0.751 42 H 0.233 0.767 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.045 0.955 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.674 -20.999 8.149 22.683 hybrid contribution 0.559 1.852 -0.111 1.937 sum -2.115 -19.147 8.038 20.873 Atomic orbital electron populations 1.70203 1.06285 1.25049 1.58458 1.25623 0.96548 1.00902 1.03100 0.85118 0.77962 0.79535 0.77119 1.21767 1.22325 1.19075 1.19475 0.91630 0.84032 1.41504 0.89959 1.45448 1.02383 1.02068 1.86110 1.20515 0.83620 0.91554 0.96930 1.21937 0.96151 0.94846 0.99506 0.91638 1.20764 0.96691 0.95062 1.00208 1.21473 0.97730 0.94434 1.01877 1.20911 0.94500 0.99610 0.79764 0.90081 1.46228 1.51738 1.31743 1.07217 1.20995 0.77976 0.80183 0.90635 1.90683 1.43319 1.39162 1.72625 1.20071 1.02775 0.98145 0.89884 1.20112 0.95084 0.96498 1.06372 1.21975 1.01502 0.94066 1.06431 1.24637 0.83939 0.97796 1.05038 1.84054 1.37720 1.20409 1.66673 1.24256 0.96304 0.87598 1.02963 1.21558 0.97043 0.92994 1.01994 1.21950 0.94962 0.94224 0.99611 0.90755 1.21543 0.95197 0.84265 0.97790 0.94610 0.97864 0.97703 0.92569 0.92454 0.90762 0.92435 0.75384 0.85846 0.86087 0.82557 0.75084 0.76665 0.89486 0.89339 0.95500 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.48 10.41 21.65 0.23 -57.25 16 2 C -0.07 -3.93 5.48 84.86 0.46 -3.46 16 3 Si 0.97 45.74 29.56 68.60 2.03 47.77 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.18 10.29 84.03 0.86 -12.31 16 8 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 9 N -0.63 -31.83 3.45 -692.63 -2.39 -34.22 16 10 C 0.20 9.63 5.07 85.82 0.44 10.06 16 11 C -0.11 -3.63 2.29 -10.62 -0.02 -3.66 16 12 H 0.07 2.24 7.97 -2.39 -0.02 2.23 16 13 C -0.09 -2.60 5.49 29.72 0.16 -2.44 16 14 C -0.12 -2.86 5.34 30.07 0.16 -2.70 16 15 C 0.16 3.46 2.68 45.11 0.12 3.58 16 16 H 0.08 1.90 7.58 -2.39 -0.02 1.88 16 17 N -0.72 -14.51 4.67 -441.96 -2.07 -16.57 16 18 C 0.51 11.59 7.68 87.66 0.67 12.27 16 19 O -0.58 -17.83 15.57 -3.04 -0.05 -17.88 16 20 C -0.07 -1.14 6.22 29.10 0.18 -0.95 16 21 C -0.18 -3.60 4.66 -19.94 -0.09 -3.69 16 22 C -0.22 -4.15 10.87 22.19 0.24 -3.91 16 23 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 24 O -0.19 -4.00 10.65 -2.51 -0.03 -4.02 16 25 C -0.04 -0.87 12.01 66.97 0.80 -0.06 16 26 C -0.10 -2.10 5.41 30.42 0.16 -1.94 16 27 C -0.09 -2.59 2.40 -10.25 -0.02 -2.61 16 28 H 0.07 2.15 6.27 -2.39 -0.01 2.13 16 29 C 0.14 5.14 6.94 86.06 0.60 5.74 16 30 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.00 0.17 7.65 -2.39 -0.02 0.15 16 32 H 0.00 0.26 7.27 -2.39 -0.02 0.25 16 33 H 0.06 1.65 7.91 -2.39 -0.02 1.63 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.52 7.93 -2.39 -0.02 1.50 16 37 H 0.41 7.19 6.82 -92.71 -0.63 6.56 16 38 H 0.12 1.48 8.14 -2.39 -0.02 1.47 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 41 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.22 3.12 8.06 -2.91 -0.02 3.09 16 43 H 0.09 1.81 8.00 -2.38 -0.02 1.79 16 44 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -74.94 365.26 3.61 -71.33 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.34 Total: 16.93 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 5.54 Total: -6.08 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.23 Total: -108.05 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.07 Total: -21.91 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -74.94 3.61 -71.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979665892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.403 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds