Wall clock time and date at job start Tue Mar 31 2020 12:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47051 * 274.98342 * 3 2 1 5 5 H 1.48503 * 109.47139 * 34.98652 * 3 2 1 6 6 H 1.48505 * 109.46824 * 154.98420 * 3 2 1 7 7 C 1.38815 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99553 * 187.30861 * 7 2 1 9 9 N 1.36932 * 119.99993 * 7.31553 * 7 2 1 10 10 C 1.48660 * 125.78273 * 175.54250 * 9 7 2 11 11 C 1.53065 * 103.44360 * 155.63869 * 10 9 7 12 12 H 1.08996 * 111.36082 * 284.01517 * 11 10 9 13 13 C 1.51617 * 116.67720 * 155.88515 * 11 10 9 14 14 C 1.53815 * 107.02383 * 183.74097 * 13 11 10 15 15 C 1.52715 * 111.74703 * 57.54021 * 14 13 11 16 16 H 1.09002 * 109.02081 * 66.49387 * 15 14 13 17 17 N 1.46494 * 109.15779 * 185.43392 * 15 14 13 18 18 C 1.34778 * 120.00298 * 277.10056 * 17 15 14 19 19 O 1.21285 * 119.99839 * 0.02562 * 18 17 15 20 20 C 1.50699 * 120.00530 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47234 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.58368 * 269.71787 * 21 20 18 23 23 C 1.34513 * 106.84182 * 179.83848 * 22 21 20 24 24 O 1.34299 * 108.42176 * 0.42280 * 23 22 21 25 25 C 1.34306 * 109.47654 * 359.72719 * 24 23 22 26 26 C 1.53844 * 111.55869 * 306.01002 * 15 14 13 27 27 C 1.51435 * 107.11301 * 57.15662 * 26 15 14 28 28 H 1.09002 * 109.87203 * 54.14326 * 27 26 15 29 29 C 1.48902 * 125.69129 * 356.02090 * 9 7 2 30 30 H 0.97004 * 119.99728 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.62937 * 37.15193 * 10 9 7 32 32 H 1.08997 * 110.62264 * 274.12825 * 10 9 7 33 33 H 1.08999 * 109.94182 * 303.12171 * 13 11 10 34 34 H 1.09002 * 109.94196 * 64.28082 * 13 11 10 35 35 H 1.09003 * 109.03178 * 178.11020 * 14 13 11 36 36 H 1.08996 * 109.03563 * 297.04216 * 14 13 11 37 37 H 0.96998 * 120.00249 * 97.11065 * 17 15 14 38 38 H 1.08999 * 109.47496 * 300.00633 * 20 18 17 39 39 H 1.09000 * 109.46807 * 60.00714 * 20 18 17 40 40 H 1.07999 * 126.57421 * 359.97438 * 22 21 20 41 41 H 1.08001 * 125.78635 * 180.18635 * 23 22 21 42 42 H 1.07997 * 125.79220 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.93626 * 297.72935 * 26 15 14 44 44 H 1.08996 * 109.94080 * 176.58603 * 26 15 14 45 45 H 1.09004 * 110.55410 * 57.91207 * 29 9 7 46 46 H 1.08993 * 110.11233 * 295.89451 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0837 -1.2059 0.1195 9 7 1.3340 -2.3833 -0.1499 10 6 1.9520 -3.7307 -0.2616 11 6 0.8416 -4.6719 0.2117 12 1 0.7364 -4.6480 1.2963 13 6 0.9050 -6.1032 -0.2844 14 6 -0.3515 -6.8180 0.2411 15 6 -1.6315 -6.1209 -0.2150 16 1 -1.7226 -6.2178 -1.2969 17 7 -2.7830 -6.7667 0.4198 18 6 -3.3052 -7.8888 -0.1138 19 8 -2.8215 -8.3642 -1.1193 20 6 -4.4902 -8.5529 0.5388 21 6 -4.8754 -9.7790 -0.2481 22 6 -5.7963 -9.8379 -1.3193 23 6 -5.8348 -11.1182 -1.7302 24 8 -4.9979 -11.8355 -0.9630 25 6 -4.4132 -11.0286 -0.0624 26 6 -1.6253 -4.6280 0.1564 27 6 -0.3919 -4.0169 -0.4747 28 1 -0.3784 -4.2300 -1.5436 29 6 -0.1449 -2.5323 -0.2392 30 1 -0.4850 0.8401 -0.0004 31 1 2.8239 -3.8083 0.3879 32 1 2.2220 -3.9447 -1.2957 33 1 0.9133 -6.1189 -1.3743 34 1 1.8003 -6.5910 0.1010 35 1 -0.3562 -7.8444 -0.1258 36 1 -0.3241 -6.8302 1.3306 37 1 -3.1698 -6.3867 1.2240 38 1 -4.2295 -8.8421 1.5569 39 1 -5.3291 -7.8574 0.5622 40 1 -6.3590 -9.0128 -1.7302 41 1 -6.4395 -11.5044 -2.5374 42 1 -3.6944 -11.3317 0.6844 43 1 -1.5836 -4.5148 1.2398 44 1 -2.5209 -4.1443 -0.2333 45 1 -0.5387 -1.9490 -1.0717 46 1 -0.6103 -2.2173 0.6946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979665907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:32 Heat of formation + Delta-G solvation = -3.749369 kcal Electronic energy + Delta-G solvation = -26455.779769 eV Core-core repulsion = 22733.271553 eV Total energy + Delta-G solvation = -3722.508216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.74294 -40.12658 -38.79086 -35.67032 -34.15652 -33.54402 -31.63697 -31.04340 -30.49488 -28.86180 -27.67000 -26.17974 -24.87112 -22.02330 -21.83024 -21.74826 -20.44742 -20.27389 -19.84625 -19.26573 -17.74439 -17.17255 -16.69596 -15.99078 -15.88022 -15.41253 -14.90550 -14.76116 -14.37593 -14.13479 -14.00096 -13.73661 -13.45809 -13.18729 -12.98916 -12.74495 -12.39933 -12.22166 -12.08022 -11.81835 -11.74286 -11.59913 -11.13407 -10.99882 -10.83178 -10.64074 -10.51890 -10.20660 -10.05428 -9.92099 -9.83762 -9.70652 -9.47468 -9.43209 -8.92226 -8.72983 -8.56481 -6.79898 -5.69021 -2.99803 1.57676 2.32725 2.60452 2.94212 3.26594 3.42061 3.47357 3.49027 4.48543 4.51981 4.54438 4.72563 4.79602 4.92010 4.94299 5.13611 5.20413 5.21976 5.32540 5.40835 5.47075 5.54546 5.66352 5.69224 5.70901 5.77533 5.81702 5.93972 6.06793 6.19724 6.23906 6.26252 6.27964 6.32282 6.43434 6.45931 6.52779 6.60962 6.68826 6.86007 6.90084 7.07849 7.48762 7.57232 7.65214 7.84157 8.21312 8.24450 9.22433 9.84058 10.52756 11.43828 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.002262 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.936494 B =12373.421397 C =12825.569743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.142 3.858 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.100 4.100 14 C -0.122 4.122 15 C 0.148 3.852 16 H 0.082 0.918 17 N -0.727 5.727 18 C 0.511 3.489 19 O -0.533 6.533 20 C -0.072 4.072 21 C -0.162 4.162 22 C -0.199 4.199 23 C -0.045 4.045 24 O -0.178 6.178 25 C -0.028 4.028 26 C -0.104 4.104 27 C -0.115 4.115 28 H 0.064 0.936 29 C 0.191 3.809 30 H 0.251 0.749 31 H 0.038 0.962 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.146 0.854 41 H 0.201 0.799 42 H 0.199 0.801 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 -20.710 2.376 23.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.338 5.338 10 C 0.016 3.984 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.139 4.139 14 C -0.161 4.161 15 C 0.044 3.956 16 H 0.100 0.900 17 N -0.378 5.378 18 C 0.297 3.703 19 O -0.409 6.409 20 C -0.112 4.112 21 C -0.164 4.164 22 C -0.218 4.218 23 C -0.112 4.112 24 O -0.073 6.073 25 C -0.096 4.096 26 C -0.142 4.142 27 C -0.135 4.135 28 H 0.082 0.918 29 C 0.067 3.933 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.233 0.767 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.164 0.836 41 H 0.218 0.782 42 H 0.216 0.784 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.358 -21.130 1.632 24.044 hybrid contribution 0.182 1.415 0.362 1.471 sum -11.176 -19.715 1.994 22.750 Atomic orbital electron populations 1.69972 1.04861 1.24877 1.57285 1.24788 0.95706 0.97544 1.02627 0.86138 0.78668 0.83769 0.77464 1.21716 1.21858 1.20703 1.19089 0.91125 0.82726 1.42276 0.90498 1.45265 1.01505 1.00761 1.86302 1.21296 0.94081 0.85854 0.97146 1.22098 0.97405 0.93235 0.99839 0.90827 1.21290 0.96433 0.95448 1.00718 1.21888 0.94129 0.99333 1.00728 1.21158 0.84270 0.91849 0.98333 0.89962 1.46205 1.33467 1.27394 1.30769 1.20572 0.84445 0.80625 0.84707 1.90722 1.61859 1.63454 1.24825 1.20013 0.97295 0.94828 0.99082 1.19793 1.01598 0.94493 1.00497 1.21679 1.02976 0.97654 0.99499 1.23950 0.97449 0.91096 0.98722 1.84056 1.46578 1.38636 1.38067 1.23772 1.00745 0.89075 0.96024 1.21499 0.99237 0.92357 1.01156 1.22065 0.93317 0.99142 0.98934 0.91752 1.20886 0.84277 0.87660 1.00471 0.93879 0.94342 0.96144 0.91784 0.91972 0.92081 0.92254 0.76702 0.88133 0.87934 0.83624 0.78239 0.78407 0.91363 0.91431 0.93236 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 10.41 55.49 0.58 -26.55 16 2 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -6.30 10.29 -15.06 -0.16 -6.45 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.61 -15.72 3.46 -169.86 -0.59 -16.30 16 10 C 0.14 2.95 6.90 -2.82 -0.02 2.93 16 11 C -0.11 -1.82 2.51 -89.89 -0.23 -2.05 16 12 H 0.07 1.29 8.01 -51.93 -0.42 0.88 16 13 C -0.10 -1.42 5.71 -27.01 -0.15 -1.57 16 14 C -0.12 -1.59 5.36 -26.45 -0.14 -1.73 16 15 C 0.15 1.94 2.43 -67.64 -0.16 1.77 16 16 H 0.08 1.26 7.58 -51.93 -0.39 0.87 16 17 N -0.73 -7.66 5.06 -53.52 -0.27 -7.93 16 18 C 0.51 5.95 7.75 -10.99 -0.09 5.87 16 19 O -0.53 -8.59 15.65 5.55 0.09 -8.50 16 20 C -0.07 -0.58 6.22 -29.04 -0.18 -0.76 16 21 C -0.16 -1.62 4.66 -104.74 -0.49 -2.11 16 22 C -0.20 -1.94 10.87 -39.70 -0.43 -2.37 16 23 C -0.04 -0.39 12.09 29.42 0.36 -0.04 16 24 O -0.18 -1.82 10.65 5.71 0.06 -1.76 16 25 C -0.03 -0.27 12.01 29.42 0.35 0.09 16 26 C -0.10 -1.50 5.14 -27.08 -0.14 -1.64 16 27 C -0.11 -2.07 2.28 -90.36 -0.21 -2.28 16 28 H 0.06 1.19 7.92 -51.93 -0.41 0.77 16 29 C 0.19 4.56 5.11 -3.05 -0.02 4.55 16 30 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.93 7.98 -51.93 -0.41 0.52 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.08 8.59 -40.82 -0.35 2.73 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.07 0.95 8.03 -51.93 -0.42 0.53 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.33 7.31 -51.93 -0.38 0.95 16 46 H 0.04 1.02 7.63 -51.93 -0.40 0.63 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -34.53 369.38 -8.76 -43.28 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.37 Total: 1.16 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.79 Total: -6.20 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.28 Total: -50.78 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.15 Total: -10.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.53 -8.76 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979665907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.534 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds