Wall clock time and date at job start Tue Mar 31 2020 12:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47051 * 274.98342 * 3 2 1 5 5 H 1.48503 * 109.47139 * 34.98652 * 3 2 1 6 6 H 1.48505 * 109.46824 * 154.98420 * 3 2 1 7 7 C 1.38815 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99553 * 187.30861 * 7 2 1 9 9 N 1.36932 * 119.99993 * 7.31553 * 7 2 1 10 10 C 1.48660 * 125.78273 * 175.54250 * 9 7 2 11 11 C 1.53065 * 103.44360 * 155.63869 * 10 9 7 12 12 H 1.08996 * 111.36082 * 284.01517 * 11 10 9 13 13 C 1.51617 * 116.67720 * 155.88515 * 11 10 9 14 14 C 1.53815 * 107.02383 * 183.74097 * 13 11 10 15 15 C 1.52715 * 111.74703 * 57.54021 * 14 13 11 16 16 H 1.09002 * 109.02081 * 66.49387 * 15 14 13 17 17 N 1.46494 * 109.15779 * 185.43392 * 15 14 13 18 18 C 1.34778 * 120.00298 * 277.10056 * 17 15 14 19 19 O 1.21285 * 119.99839 * 0.02562 * 18 17 15 20 20 C 1.50699 * 120.00530 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47234 * 180.02562 * 20 18 17 22 22 C 1.41381 * 126.58368 * 269.71787 * 21 20 18 23 23 C 1.34513 * 106.84182 * 179.83848 * 22 21 20 24 24 O 1.34299 * 108.42176 * 0.42280 * 23 22 21 25 25 C 1.34306 * 109.47654 * 359.72719 * 24 23 22 26 26 C 1.53844 * 111.55869 * 306.01002 * 15 14 13 27 27 C 1.51435 * 107.11301 * 57.15662 * 26 15 14 28 28 H 1.09002 * 109.87203 * 54.14326 * 27 26 15 29 29 C 1.48902 * 125.69129 * 356.02090 * 9 7 2 30 30 H 0.97004 * 119.99728 * 0.02562 * 1 2 3 31 31 H 1.08994 * 110.62937 * 37.15193 * 10 9 7 32 32 H 1.08997 * 110.62264 * 274.12825 * 10 9 7 33 33 H 1.08999 * 109.94182 * 303.12171 * 13 11 10 34 34 H 1.09002 * 109.94196 * 64.28082 * 13 11 10 35 35 H 1.09003 * 109.03178 * 178.11020 * 14 13 11 36 36 H 1.08996 * 109.03563 * 297.04216 * 14 13 11 37 37 H 0.96998 * 120.00249 * 97.11065 * 17 15 14 38 38 H 1.08999 * 109.47496 * 300.00633 * 20 18 17 39 39 H 1.09000 * 109.46807 * 60.00714 * 20 18 17 40 40 H 1.07999 * 126.57421 * 359.97438 * 22 21 20 41 41 H 1.08001 * 125.78635 * 180.18635 * 23 22 21 42 42 H 1.07997 * 125.79220 * 179.97438 * 25 24 23 43 43 H 1.09006 * 109.93626 * 297.72935 * 26 15 14 44 44 H 1.08996 * 109.94080 * 176.58603 * 26 15 14 45 45 H 1.09004 * 110.55410 * 57.91207 * 29 9 7 46 46 H 1.08993 * 110.11233 * 295.89451 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0837 -1.2059 0.1195 9 7 1.3340 -2.3833 -0.1499 10 6 1.9520 -3.7307 -0.2616 11 6 0.8416 -4.6719 0.2117 12 1 0.7364 -4.6480 1.2963 13 6 0.9050 -6.1032 -0.2844 14 6 -0.3515 -6.8180 0.2411 15 6 -1.6315 -6.1209 -0.2150 16 1 -1.7226 -6.2178 -1.2969 17 7 -2.7830 -6.7667 0.4198 18 6 -3.3052 -7.8888 -0.1138 19 8 -2.8215 -8.3642 -1.1193 20 6 -4.4902 -8.5529 0.5388 21 6 -4.8754 -9.7790 -0.2481 22 6 -5.7963 -9.8379 -1.3193 23 6 -5.8348 -11.1182 -1.7302 24 8 -4.9979 -11.8355 -0.9630 25 6 -4.4132 -11.0286 -0.0624 26 6 -1.6253 -4.6280 0.1564 27 6 -0.3919 -4.0169 -0.4747 28 1 -0.3784 -4.2300 -1.5436 29 6 -0.1449 -2.5323 -0.2392 30 1 -0.4850 0.8401 -0.0004 31 1 2.8239 -3.8083 0.3879 32 1 2.2220 -3.9447 -1.2957 33 1 0.9133 -6.1189 -1.3743 34 1 1.8003 -6.5910 0.1010 35 1 -0.3562 -7.8444 -0.1258 36 1 -0.3241 -6.8302 1.3306 37 1 -3.1698 -6.3867 1.2240 38 1 -4.2295 -8.8421 1.5569 39 1 -5.3291 -7.8574 0.5622 40 1 -6.3590 -9.0128 -1.7302 41 1 -6.4395 -11.5044 -2.5374 42 1 -3.6944 -11.3317 0.6844 43 1 -1.5836 -4.5148 1.2398 44 1 -2.5209 -4.1443 -0.2333 45 1 -0.5387 -1.9490 -1.0717 46 1 -0.6103 -2.2173 0.6946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979665907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:31 Heat of formation + Delta-G solvation = -25.900709 kcal Electronic energy + Delta-G solvation = -26456.740323 eV Core-core repulsion = 22733.271553 eV Total energy + Delta-G solvation = -3723.468770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.40749 -41.26025 -40.05738 -37.08336 -35.01983 -34.88276 -33.32913 -32.33274 -31.35587 -30.24601 -28.65454 -27.73851 -26.58505 -23.55563 -22.77949 -22.46108 -21.62960 -21.37308 -21.17431 -20.57548 -18.81545 -18.42830 -17.98339 -17.03439 -16.74199 -16.61068 -16.25238 -15.77088 -15.71221 -15.56828 -15.39363 -15.00140 -14.68438 -14.07791 -14.01248 -13.66401 -13.64121 -13.49519 -13.44806 -13.28827 -13.12775 -12.81386 -12.76520 -12.55894 -12.38434 -12.12054 -11.92918 -11.75960 -11.70947 -11.51233 -11.24422 -10.95311 -10.84038 -10.67075 -10.46276 -9.96881 -9.39115 -8.88638 -7.84776 -5.17693 0.91471 1.45322 1.47616 1.56136 1.62243 1.73500 2.32450 2.42192 2.50268 3.33678 3.58292 3.62853 3.70496 3.82832 3.90277 3.98945 4.11075 4.13209 4.22221 4.40454 4.46275 4.49953 4.55265 4.59714 4.67596 4.70406 4.74346 4.80125 4.83810 4.97022 5.05225 5.10352 5.14308 5.16747 5.19434 5.26022 5.33993 5.39215 5.47120 5.55539 5.62131 5.63035 5.72628 5.80988 6.17710 6.23591 6.67245 7.08897 7.36986 7.75736 8.44404 9.26750 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036077 B = 0.002262 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.936494 B =12373.421397 C =12825.569743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.636 5.636 10 C 0.135 3.865 11 C -0.089 4.089 12 H 0.076 0.924 13 C -0.093 4.093 14 C -0.114 4.114 15 C 0.158 3.842 16 H 0.059 0.941 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.581 6.581 20 C -0.064 4.064 21 C -0.182 4.182 22 C -0.224 4.224 23 C -0.049 4.049 24 O -0.193 6.193 25 C -0.040 4.040 26 C -0.093 4.093 27 C -0.105 4.105 28 H 0.058 0.942 29 C 0.201 3.799 30 H 0.246 0.754 31 H 0.044 0.956 32 H 0.023 0.977 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.153 0.847 41 H 0.230 0.770 42 H 0.222 0.778 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.008 0.992 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.804 -22.228 3.609 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.363 5.363 10 C 0.011 3.989 11 C -0.108 4.108 12 H 0.094 0.906 13 C -0.131 4.131 14 C -0.152 4.152 15 C 0.053 3.947 16 H 0.078 0.922 17 N -0.367 5.367 18 C 0.299 3.701 19 O -0.461 6.461 20 C -0.103 4.103 21 C -0.184 4.184 22 C -0.243 4.243 23 C -0.115 4.115 24 O -0.089 6.089 25 C -0.108 4.108 26 C -0.132 4.132 27 C -0.125 4.125 28 H 0.077 0.923 29 C 0.077 3.923 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.253 0.747 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.171 0.829 41 H 0.247 0.753 42 H 0.239 0.761 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.026 0.974 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -11.445 -22.665 2.897 25.556 hybrid contribution 0.229 1.895 -0.066 1.910 sum -11.216 -20.770 2.831 23.774 Atomic orbital electron populations 1.70185 1.06219 1.25162 1.58357 1.25636 0.96645 1.00883 1.02991 0.85093 0.77917 0.79397 0.77161 1.21714 1.22034 1.19221 1.19475 0.91627 0.84094 1.41673 0.90165 1.45639 1.02522 1.02027 1.86102 1.21500 0.95404 0.84558 0.97485 1.21974 0.94775 0.94327 0.99739 0.90573 1.21243 0.98114 0.93273 1.00493 1.21802 0.93043 0.98752 1.01632 1.20835 0.85640 0.90950 0.97284 0.92241 1.46027 1.32596 1.27030 1.31077 1.21188 0.84757 0.80227 0.83961 1.90708 1.63486 1.64799 1.27061 1.20063 0.96140 0.94239 0.99859 1.20145 1.01873 0.95381 1.00973 1.21994 1.03719 0.98438 1.00147 1.24595 0.97029 0.91019 0.98886 1.84053 1.46995 1.39329 1.38517 1.24328 1.00975 0.89130 0.96318 1.21380 0.97270 0.93045 1.01464 1.21865 0.96076 0.95341 0.99218 0.92304 1.20603 0.83453 0.90967 0.97307 0.94462 0.93725 0.95956 0.92280 0.89998 0.92219 0.90570 0.74693 0.84941 0.85899 0.82927 0.75324 0.76117 0.90185 0.91345 0.97381 0.97047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.73 10.41 21.65 0.23 -57.50 16 2 C -0.07 -3.98 5.48 84.86 0.46 -3.51 16 3 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.24 -13.70 10.29 84.03 0.86 -12.83 16 8 H 0.08 4.40 7.84 -2.91 -0.02 4.37 16 9 N -0.64 -33.33 3.46 -691.33 -2.40 -35.72 16 10 C 0.13 5.55 6.90 85.98 0.59 6.14 16 11 C -0.09 -2.93 2.51 -10.32 -0.03 -2.95 16 12 H 0.08 2.51 8.01 -2.39 -0.02 2.49 16 13 C -0.09 -2.40 5.71 30.42 0.17 -2.23 16 14 C -0.11 -2.64 5.36 30.77 0.16 -2.48 16 15 C 0.16 3.85 2.43 45.18 0.11 3.96 16 16 H 0.06 1.77 7.58 -2.39 -0.02 1.75 16 17 N -0.72 -13.22 5.06 -441.63 -2.24 -15.46 16 18 C 0.51 10.83 7.75 87.66 0.68 11.51 16 19 O -0.58 -18.17 15.65 -3.05 -0.05 -18.22 16 20 C -0.06 -0.85 6.22 29.10 0.18 -0.67 16 21 C -0.18 -3.33 4.66 -19.94 -0.09 -3.42 16 22 C -0.22 -4.13 10.87 22.19 0.24 -3.88 16 23 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 24 O -0.19 -3.76 10.65 -2.48 -0.03 -3.78 16 25 C -0.04 -0.70 12.01 66.97 0.80 0.10 16 26 C -0.09 -2.57 5.14 30.37 0.16 -2.41 16 27 C -0.11 -3.80 2.28 -10.62 -0.02 -3.82 16 28 H 0.06 2.19 7.92 -2.39 -0.02 2.17 16 29 C 0.20 9.94 5.11 85.69 0.44 10.38 16 30 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.42 5.01 8.59 -92.71 -0.80 4.22 16 38 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.23 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.22 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.08 2.05 8.03 -2.38 -0.02 2.03 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.01 0.45 7.31 -2.38 -0.02 0.43 16 46 H 0.01 0.61 7.63 -2.39 -0.02 0.59 16 Total: -1.00 -77.68 369.38 3.26 -74.42 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.18 Total: 13.95 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 5.54 Total: -6.11 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.41 Total: -108.68 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.07 Total: -22.00 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.68 3.26 -74.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979665907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.518 kcal (2) G-P(sol) polarization free energy of solvation -77.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds