Wall clock time and date at job start Tue Mar 31 2020 12:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.48238 * 125.78571 * 0.30240 * 9 7 2 11 11 C 1.52330 * 105.86751 * 176.82002 * 10 9 7 12 12 H 1.09003 * 109.88096 * 272.32175 * 11 10 9 13 13 C 1.51442 * 117.44651 * 145.79436 * 11 10 9 14 14 C 1.53836 * 107.03930 * 181.23560 * 13 11 10 15 15 C 1.52523 * 111.66737 * 57.20049 * 14 13 11 16 16 H 1.08999 * 109.03938 * 185.39055 * 15 14 13 17 17 N 1.46503 * 109.03557 * 66.45258 * 15 14 13 18 18 C 1.34770 * 119.99739 * 85.00724 * 17 15 14 19 19 O 1.21287 * 120.00132 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00417 * 180.02562 * 18 17 15 21 21 C 1.50695 * 109.47693 * 179.97438 * 20 18 17 22 22 C 1.34508 * 125.78776 * 89.99697 * 21 20 18 23 23 C 1.41394 * 106.83885 * 180.02562 * 22 21 20 24 24 C 1.34511 * 106.83725 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.78837 * 269.69437 * 21 20 18 26 26 C 1.53821 * 111.69783 * 305.95648 * 15 14 13 27 27 C 1.51299 * 107.43778 * 57.28931 * 26 15 14 28 28 H 1.09007 * 109.98140 * 55.69286 * 27 26 15 29 29 C 1.48660 * 125.78181 * 179.97438 * 9 7 2 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.16981 * 295.91860 * 10 9 7 32 32 H 1.09003 * 110.16854 * 57.71707 * 10 9 7 33 33 H 1.09004 * 109.94237 * 300.61805 * 13 11 10 34 34 H 1.09005 * 109.94194 * 61.85579 * 13 11 10 35 35 H 1.09004 * 109.04079 * 177.75815 * 14 13 11 36 36 H 1.09002 * 109.04375 * 296.70547 * 14 13 11 37 37 H 0.97000 * 119.99979 * 265.00101 * 17 15 14 38 38 H 1.09005 * 109.46816 * 299.99997 * 20 18 17 39 39 H 1.09001 * 109.47093 * 59.99529 * 20 18 17 40 40 H 1.08000 * 126.58666 * 359.97224 * 22 21 20 41 41 H 1.07996 * 126.57487 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.78595 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.94144 * 176.91079 * 26 15 14 44 44 H 1.08994 * 109.94480 * 298.06966 * 26 15 14 45 45 H 1.09004 * 110.62476 * 274.10564 * 29 9 7 46 46 H 1.09000 * 110.63068 * 37.12463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1492 -2.5375 0.0070 11 6 -0.4160 -4.0355 -0.0661 12 1 -0.4454 -4.3564 -1.1074 13 6 -1.6287 -4.5653 0.6703 14 6 -1.6506 -6.0897 0.4645 15 6 -0.3601 -6.7421 0.9497 16 1 -0.3811 -7.8023 0.6975 17 7 -0.2702 -6.5990 2.4049 18 6 -0.8784 -7.4935 3.2088 19 8 -1.5006 -8.4167 2.7275 20 6 -0.7865 -7.3461 4.7058 21 6 -1.5468 -8.4657 5.3685 22 6 -1.0398 -9.6612 5.7190 23 6 -2.0950 -10.3979 6.3047 24 6 -3.1838 -9.6086 6.2764 25 8 -2.8442 -8.4370 5.7145 26 6 0.8796 -6.0979 0.3062 27 6 0.8447 -4.6211 0.6334 28 1 0.7866 -4.4800 1.7128 29 6 1.9355 -3.7438 0.0076 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5686 -2.1254 0.9249 32 1 -0.5779 -2.0365 -0.8609 33 1 -1.5485 -4.3347 1.7326 34 1 -2.5359 -4.1217 0.2600 35 1 -2.4912 -6.5109 1.0160 36 1 -1.7788 -6.3035 -0.5966 37 1 0.2272 -5.8605 2.7898 38 1 0.2591 -7.3858 5.0112 39 1 -1.2159 -6.3896 5.0037 40 1 -0.0222 -9.9949 5.5792 41 1 -2.0377 -11.4017 6.6990 42 1 -4.1636 -9.8706 6.6475 43 1 1.7855 -6.5474 0.7129 44 1 0.8504 -6.2337 -0.7748 45 1 2.1549 -4.0667 -1.0101 46 1 2.8376 -3.7588 0.6192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980205319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:43 Heat of formation + Delta-G solvation = 0.186058 kcal Electronic energy + Delta-G solvation = -26928.552675 eV Core-core repulsion = 23206.215112 eV Total energy + Delta-G solvation = -3722.337563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69557 -40.35359 -38.72634 -35.66852 -33.41005 -33.20469 -32.32565 -31.76142 -30.61182 -28.93245 -27.26339 -26.16509 -25.03464 -22.01546 -21.91308 -21.82187 -20.66145 -20.37906 -19.77063 -18.94735 -17.67467 -17.31047 -16.73590 -15.92762 -15.84097 -15.56626 -14.91964 -14.59432 -14.40000 -14.16800 -13.79040 -13.63116 -13.22086 -13.05403 -12.96752 -12.86236 -12.72620 -12.27380 -12.18439 -12.00971 -11.85703 -11.43613 -11.18653 -11.03633 -10.84688 -10.77573 -10.66464 -10.06168 -10.03751 -9.95774 -9.90613 -9.85196 -9.50367 -9.38692 -8.94578 -8.60866 -8.60558 -6.82845 -5.69944 -3.03084 1.56000 2.45488 2.55253 2.78321 3.29169 3.39828 3.44775 3.46692 4.36689 4.48860 4.68830 4.78877 4.86298 4.87205 4.92545 5.03952 5.06010 5.11724 5.30179 5.35198 5.52549 5.63131 5.64693 5.67397 5.73093 5.75680 5.83483 5.93500 5.97571 6.13237 6.15129 6.23341 6.26679 6.35016 6.36430 6.48996 6.57807 6.62797 6.63226 6.82717 6.98522 6.98880 7.46287 7.55782 7.65298 7.83655 8.16348 8.23599 9.21072 9.81788 10.49609 11.41892 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002638 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.418738 B =10611.804896 C =10975.367243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.188 3.812 11 C -0.116 4.116 12 H 0.063 0.937 13 C -0.098 4.098 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.083 0.917 17 N -0.719 5.719 18 C 0.514 3.486 19 O -0.535 6.535 20 C -0.065 4.065 21 C 0.010 3.990 22 C -0.199 4.199 23 C -0.214 4.214 24 C -0.040 4.040 25 O -0.172 6.172 26 C -0.112 4.112 27 C -0.107 4.107 28 H 0.070 0.930 29 C 0.143 3.857 30 H 0.251 0.749 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.021 0.979 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.876 -18.228 9.770 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.354 4.354 8 H 0.094 0.906 9 N -0.337 5.337 10 C 0.064 3.936 11 C -0.136 4.136 12 H 0.081 0.919 13 C -0.136 4.136 14 C -0.165 4.165 15 C 0.047 3.953 16 H 0.101 0.899 17 N -0.372 5.372 18 C 0.299 3.701 19 O -0.412 6.412 20 C -0.105 4.105 21 C -0.040 4.040 22 C -0.218 4.218 23 C -0.233 4.233 24 C -0.108 4.108 25 O -0.068 6.068 26 C -0.150 4.150 27 C -0.127 4.127 28 H 0.088 0.912 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.218 0.782 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.039 0.961 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.554 -18.403 9.362 20.951 hybrid contribution 0.701 1.058 0.223 1.288 sum -2.854 -17.345 9.585 20.022 Atomic orbital electron populations 1.69958 1.04833 1.24921 1.57266 1.24784 0.95709 0.97569 1.02534 0.86145 0.78558 0.83663 0.77547 1.21677 1.21729 1.20769 1.19060 0.90376 0.82504 1.43482 0.90552 1.45103 1.01459 0.99649 1.87450 1.20804 0.84097 0.87848 1.00829 1.22158 0.93738 0.99315 0.98354 0.91904 1.21211 0.98373 0.93654 1.00321 1.21930 0.96957 0.96338 1.01290 1.21053 0.95281 1.00244 0.78674 0.89901 1.46208 1.54305 1.29535 1.07158 1.20320 0.79123 0.82201 0.88408 1.90730 1.41222 1.32474 1.76729 1.20132 1.01132 0.97305 0.91949 1.21488 0.82194 0.97576 1.02781 1.21512 1.01050 0.93941 1.05340 1.21789 0.93167 1.01703 1.06676 1.23983 1.00541 0.84025 1.02211 1.83996 1.26149 1.35911 1.60709 1.21587 0.96240 0.95943 1.01227 1.22025 0.98119 0.92862 0.99655 0.91218 1.21326 0.94045 0.86188 0.96700 0.93834 0.94409 0.93327 0.92166 0.91958 0.91998 0.91391 0.76110 0.85849 0.86857 0.83644 0.83554 0.78198 0.91528 0.90328 0.96127 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.36 55.49 0.58 -26.32 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.21 10.30 -15.06 -0.16 -6.37 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.61 -15.16 3.45 -170.25 -0.59 -15.75 16 10 C 0.19 4.42 5.06 -3.43 -0.02 4.40 16 11 C -0.12 -2.03 2.27 -90.36 -0.21 -2.24 16 12 H 0.06 1.10 7.95 -51.93 -0.41 0.69 16 13 C -0.10 -1.46 5.58 -27.08 -0.15 -1.61 16 14 C -0.13 -1.67 5.42 -26.54 -0.14 -1.81 16 15 C 0.15 1.85 2.71 -67.75 -0.18 1.67 16 16 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 17 N -0.72 -8.03 4.66 -53.63 -0.25 -8.28 16 18 C 0.51 6.29 7.77 -10.99 -0.09 6.20 16 19 O -0.54 -8.70 15.67 5.55 0.09 -8.61 16 20 C -0.07 -0.60 6.23 -29.04 -0.18 -0.79 16 21 C 0.01 0.12 5.81 -35.63 -0.21 -0.09 16 22 C -0.20 -2.17 10.81 -39.70 -0.43 -2.59 16 23 C -0.21 -2.11 10.91 -39.70 -0.43 -2.55 16 24 C -0.04 -0.39 12.09 29.41 0.36 -0.03 16 25 O -0.17 -2.12 10.65 5.72 0.06 -2.06 16 26 C -0.11 -1.37 5.36 -27.16 -0.15 -1.51 16 27 C -0.11 -1.67 2.43 -89.91 -0.22 -1.89 16 28 H 0.07 1.07 6.25 -51.93 -0.32 0.74 16 29 C 0.14 2.79 6.92 -2.68 -0.02 2.77 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 0.98 7.60 -51.93 -0.39 0.58 16 32 H 0.05 1.30 7.31 -51.93 -0.38 0.92 16 33 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 3.97 6.83 -40.82 -0.28 3.69 16 38 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.20 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.95 8.00 -51.93 -0.42 0.54 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -33.87 365.64 -9.15 -43.01 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -7.20 Total: 2.37 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.31 Total: -6.81 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.26 Total: -50.35 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.15 Total: -10.68 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.87 -9.15 -43.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.199 kcal (2) G-P(sol) polarization free energy of solvation -33.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds