Wall clock time and date at job start Tue Mar 31 2020 12:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.48238 * 125.78571 * 0.30240 * 9 7 2 11 11 C 1.52330 * 105.86751 * 176.82002 * 10 9 7 12 12 H 1.09003 * 109.88096 * 272.32175 * 11 10 9 13 13 C 1.51442 * 117.44651 * 145.79436 * 11 10 9 14 14 C 1.53836 * 107.03930 * 181.23560 * 13 11 10 15 15 C 1.52523 * 111.66737 * 57.20049 * 14 13 11 16 16 H 1.08999 * 109.03938 * 185.39055 * 15 14 13 17 17 N 1.46503 * 109.03557 * 66.45258 * 15 14 13 18 18 C 1.34770 * 119.99739 * 85.00724 * 17 15 14 19 19 O 1.21287 * 120.00132 * 359.97438 * 18 17 15 20 20 C 1.50699 * 120.00417 * 180.02562 * 18 17 15 21 21 C 1.50695 * 109.47693 * 179.97438 * 20 18 17 22 22 C 1.34508 * 125.78776 * 89.99697 * 21 20 18 23 23 C 1.41394 * 106.83885 * 180.02562 * 22 21 20 24 24 C 1.34511 * 106.83725 * 0.02562 * 23 22 21 25 25 O 1.34301 * 125.78837 * 269.69437 * 21 20 18 26 26 C 1.53821 * 111.69783 * 305.95648 * 15 14 13 27 27 C 1.51299 * 107.43778 * 57.28931 * 26 15 14 28 28 H 1.09007 * 109.98140 * 55.69286 * 27 26 15 29 29 C 1.48660 * 125.78181 * 179.97438 * 9 7 2 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.16981 * 295.91860 * 10 9 7 32 32 H 1.09003 * 110.16854 * 57.71707 * 10 9 7 33 33 H 1.09004 * 109.94237 * 300.61805 * 13 11 10 34 34 H 1.09005 * 109.94194 * 61.85579 * 13 11 10 35 35 H 1.09004 * 109.04079 * 177.75815 * 14 13 11 36 36 H 1.09002 * 109.04375 * 296.70547 * 14 13 11 37 37 H 0.97000 * 119.99979 * 265.00101 * 17 15 14 38 38 H 1.09005 * 109.46816 * 299.99997 * 20 18 17 39 39 H 1.09001 * 109.47093 * 59.99529 * 20 18 17 40 40 H 1.08000 * 126.58666 * 359.97224 * 22 21 20 41 41 H 1.07996 * 126.57487 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.78595 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.94144 * 176.91079 * 26 15 14 44 44 H 1.08994 * 109.94480 * 298.06966 * 26 15 14 45 45 H 1.09004 * 110.62476 * 274.10564 * 29 9 7 46 46 H 1.09000 * 110.63068 * 37.12463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1492 -2.5375 0.0070 11 6 -0.4160 -4.0355 -0.0661 12 1 -0.4454 -4.3564 -1.1074 13 6 -1.6287 -4.5653 0.6703 14 6 -1.6506 -6.0897 0.4645 15 6 -0.3601 -6.7421 0.9497 16 1 -0.3811 -7.8023 0.6975 17 7 -0.2702 -6.5990 2.4049 18 6 -0.8784 -7.4935 3.2088 19 8 -1.5006 -8.4167 2.7275 20 6 -0.7865 -7.3461 4.7058 21 6 -1.5468 -8.4657 5.3685 22 6 -1.0398 -9.6612 5.7190 23 6 -2.0950 -10.3979 6.3047 24 6 -3.1838 -9.6086 6.2764 25 8 -2.8442 -8.4370 5.7145 26 6 0.8796 -6.0979 0.3062 27 6 0.8447 -4.6211 0.6334 28 1 0.7866 -4.4800 1.7128 29 6 1.9355 -3.7438 0.0076 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5686 -2.1254 0.9249 32 1 -0.5779 -2.0365 -0.8609 33 1 -1.5485 -4.3347 1.7326 34 1 -2.5359 -4.1217 0.2600 35 1 -2.4912 -6.5109 1.0160 36 1 -1.7788 -6.3035 -0.5966 37 1 0.2272 -5.8605 2.7898 38 1 0.2591 -7.3858 5.0112 39 1 -1.2159 -6.3896 5.0037 40 1 -0.0222 -9.9949 5.5792 41 1 -2.0377 -11.4017 6.6990 42 1 -4.1636 -9.8706 6.6475 43 1 1.7855 -6.5474 0.7129 44 1 0.8504 -6.2337 -0.7748 45 1 2.1549 -4.0667 -1.0101 46 1 2.8376 -3.7588 0.6192 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980205319.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:42 Heat of formation + Delta-G solvation = -20.908876 kcal Electronic energy + Delta-G solvation = -26929.467420 eV Core-core repulsion = 23206.215112 eV Total energy + Delta-G solvation = -3723.252308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.45707 -41.48080 -39.95787 -37.11213 -34.73975 -34.11760 -33.55363 -32.94931 -31.90318 -30.49814 -28.24999 -27.54125 -26.76134 -23.54297 -22.79611 -22.63726 -21.92190 -21.41933 -21.16575 -20.14232 -18.74310 -18.50881 -18.12580 -17.04745 -16.73975 -16.65360 -16.48211 -15.74074 -15.69161 -15.47041 -15.06220 -14.83813 -14.54271 -14.39968 -13.87041 -13.70680 -13.65737 -13.53125 -13.52141 -13.37985 -12.99117 -12.78099 -12.66735 -12.62566 -12.44911 -12.38427 -11.97161 -11.88309 -11.73805 -11.37568 -11.00273 -10.96171 -10.79170 -10.77852 -10.66594 -9.98355 -9.35982 -8.86194 -7.81564 -5.16185 0.79210 1.46560 1.48159 1.56682 1.64492 1.71167 2.06984 2.44435 2.51178 3.36616 3.56126 3.64534 3.66704 3.75611 3.86349 3.98872 4.14815 4.17380 4.19562 4.38040 4.40170 4.47945 4.50577 4.51510 4.63448 4.73540 4.76799 4.89245 4.93862 4.97523 5.03947 5.04211 5.12160 5.15613 5.20654 5.25076 5.28292 5.40115 5.50820 5.58974 5.60638 5.65054 5.77499 5.84673 6.20825 6.23564 6.57612 7.11771 7.26558 7.79413 8.46466 9.28891 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.002638 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.418738 B =10611.804896 C =10975.367243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.071 4.071 3 Si 0.975 3.025 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.236 4.236 8 H 0.083 0.917 9 N -0.633 5.633 10 C 0.199 3.801 11 C -0.106 4.106 12 H 0.066 0.934 13 C -0.090 4.090 14 C -0.117 4.117 15 C 0.156 3.844 16 H 0.084 0.916 17 N -0.712 5.712 18 C 0.515 3.485 19 O -0.578 6.578 20 C -0.061 4.061 21 C -0.015 4.015 22 C -0.211 4.211 23 C -0.228 4.228 24 C -0.047 4.047 25 O -0.196 6.196 26 C -0.098 4.098 27 C -0.088 4.088 28 H 0.076 0.924 29 C 0.137 3.863 30 H 0.244 0.756 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.168 0.832 42 H 0.233 0.767 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.027 0.973 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -19.925 10.640 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.360 5.360 10 C 0.074 3.926 11 C -0.125 4.125 12 H 0.084 0.916 13 C -0.128 4.128 14 C -0.156 4.156 15 C 0.052 3.948 16 H 0.102 0.898 17 N -0.365 5.365 18 C 0.303 3.697 19 O -0.458 6.458 20 C -0.100 4.100 21 C -0.065 4.065 22 C -0.231 4.231 23 C -0.247 4.247 24 C -0.114 4.114 25 O -0.093 6.093 26 C -0.137 4.137 27 C -0.107 4.107 28 H 0.094 0.906 29 C 0.012 3.988 30 H 0.053 0.947 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.249 0.751 38 H 0.174 0.826 39 H 0.146 0.854 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.249 0.751 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.045 0.955 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.214 -20.118 10.240 22.683 hybrid contribution 0.304 1.560 -0.060 1.591 sum -1.910 -18.558 10.180 21.253 Atomic orbital electron populations 1.70193 1.06276 1.25003 1.58754 1.25623 0.96573 1.00939 1.03182 0.85117 0.77742 0.79397 0.77334 1.21603 1.22323 1.19181 1.19481 0.90995 0.83860 1.42191 0.89928 1.45459 1.02252 1.01126 1.87186 1.20510 0.83555 0.91445 0.97089 1.21962 0.96158 0.95087 0.99336 0.91604 1.21134 0.96865 0.95045 0.99757 1.21843 0.97462 0.94348 1.01949 1.20953 0.94544 1.00061 0.79288 0.89765 1.46148 1.54008 1.29550 1.06749 1.20786 0.78027 0.81344 0.89590 1.90711 1.43124 1.34284 1.77676 1.20248 1.02938 0.97350 0.89479 1.21947 0.82234 0.98676 1.03642 1.21872 1.02017 0.94015 1.05156 1.22168 0.93008 1.02744 1.06739 1.24733 1.02014 0.83244 1.01417 1.83983 1.26788 1.37157 1.61342 1.21515 0.97240 0.92921 1.01976 1.21897 0.94857 0.94505 0.99469 0.90622 1.21551 0.95371 0.84302 0.97534 0.94657 0.97838 0.97785 0.92285 0.92607 0.92705 0.90433 0.75104 0.82593 0.85423 0.82335 0.81463 0.75070 0.89157 0.89535 0.95491 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 10.36 21.65 0.22 -57.47 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 3 Si 0.98 45.74 29.55 68.60 2.03 47.76 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.08 10.30 84.03 0.87 -12.22 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.63 -31.76 3.45 -692.54 -2.39 -34.14 16 10 C 0.20 9.64 5.06 85.82 0.43 10.07 16 11 C -0.11 -3.65 2.27 -10.62 -0.02 -3.68 16 12 H 0.07 2.25 7.95 -2.39 -0.02 2.23 16 13 C -0.09 -2.63 5.58 30.37 0.17 -2.46 16 14 C -0.12 -2.88 5.42 30.72 0.17 -2.72 16 15 C 0.16 3.39 2.71 45.11 0.12 3.51 16 16 H 0.08 1.94 7.52 -2.39 -0.02 1.92 16 17 N -0.71 -14.06 4.66 -441.97 -2.06 -16.12 16 18 C 0.52 11.61 7.77 87.66 0.68 12.29 16 19 O -0.58 -18.13 15.67 -3.05 -0.05 -18.18 16 20 C -0.06 -1.00 6.23 29.10 0.18 -0.82 16 21 C -0.01 -0.33 5.81 24.83 0.14 -0.18 16 22 C -0.21 -4.30 10.81 22.19 0.24 -4.06 16 23 C -0.23 -4.15 10.91 22.19 0.24 -3.91 16 24 C -0.05 -0.86 12.09 66.97 0.81 -0.05 16 25 O -0.20 -4.69 10.65 -2.46 -0.03 -4.72 16 26 C -0.10 -2.07 5.36 30.32 0.16 -1.90 16 27 C -0.09 -2.55 2.43 -10.33 -0.03 -2.57 16 28 H 0.08 2.13 6.25 -2.38 -0.01 2.12 16 29 C 0.14 5.11 6.92 86.07 0.60 5.70 16 30 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.00 0.19 7.60 -2.39 -0.02 0.17 16 32 H 0.00 0.22 7.31 -2.39 -0.02 0.20 16 33 H 0.06 1.74 7.92 -2.39 -0.02 1.72 16 34 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 6.85 6.83 -92.71 -0.63 6.21 16 38 H 0.16 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 41 H 0.17 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.23 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.77 8.00 -2.39 -0.02 1.75 16 45 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.35 365.64 3.30 -73.05 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.34 Total: 16.38 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.23 Total: -6.56 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -4.22 Total: -107.73 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.90 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -76.35 3.30 -73.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205319.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.142 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds