Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99990 * 2 1 4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46652 * 300.00410 * 3 2 1 6 6 H 1.48497 * 109.47197 * 59.99961 * 3 2 1 7 7 C 1.38808 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.47822 * 125.64595 * 0.02562 * 9 7 2 11 11 C 1.53909 * 104.06097 * 156.64304 * 10 9 7 12 12 H 1.08997 * 109.20062 * 282.70954 * 11 10 9 13 13 C 1.50726 * 112.51121 * 161.20445 * 11 10 9 14 14 C 1.51738 * 112.35521 * 294.44191 * 13 11 10 15 15 C 1.53325 * 108.31786 * 301.72651 * 14 13 11 16 16 H 1.09004 * 109.70738 * 304.03592 * 15 14 13 17 17 N 1.46499 * 109.67990 * 183.50904 * 15 14 13 18 18 C 1.34777 * 119.99665 * 86.33034 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.79323 * 89.99586 * 21 20 18 23 23 C 1.41379 * 106.84331 * 179.97438 * 22 21 20 24 24 C 1.34510 * 106.84231 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.42148 * 359.73179 * 24 23 22 26 26 C 1.52596 * 108.40493 * 63.77690 * 15 14 13 27 27 C 1.52996 * 111.05886 * 297.65293 * 26 15 14 28 28 H 1.09006 * 112.07741 * 286.66912 * 27 26 15 29 29 C 1.47165 * 125.65403 * 180.02562 * 9 7 2 30 30 H 0.97008 * 119.99924 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.51644 * 37.99826 * 10 9 7 32 32 H 1.08999 * 110.51577 * 275.28590 * 10 9 7 33 33 H 1.09001 * 109.02950 * 55.81183 * 13 11 10 34 34 H 1.08997 * 109.02726 * 174.72457 * 13 11 10 35 35 H 1.09012 * 109.91104 * 181.84476 * 14 13 11 36 36 H 1.09001 * 109.34754 * 61.28487 * 14 13 11 37 37 H 0.97001 * 119.99790 * 266.04747 * 17 15 14 38 38 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 39 39 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 40 40 H 1.08001 * 126.57962 * 0.04112 * 22 21 20 41 41 H 1.07997 * 126.58005 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.79445 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.15788 * 58.05883 * 26 15 14 44 44 H 1.08997 * 109.15796 * 177.23956 * 26 15 14 45 45 H 1.09004 * 109.96354 * 59.66800 * 29 9 7 46 46 H 1.09002 * 109.96333 * 298.42963 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1454 -2.5335 0.0017 11 6 -0.3826 -3.9349 -0.5889 12 1 -0.2535 -3.8946 -1.6705 13 6 -1.7555 -4.4701 -0.2715 14 6 -1.9499 -4.7164 1.2130 15 6 -0.8788 -5.7087 1.6811 16 1 -0.9345 -6.6187 1.0836 17 7 -1.0903 -6.0327 3.0941 18 6 -1.9355 -7.0244 3.4388 19 8 -2.5248 -7.6450 2.5795 20 6 -2.1483 -7.3617 4.8920 21 6 -3.1327 -8.4972 5.0051 22 6 -2.8252 -9.8067 5.0180 23 6 -4.0442 -10.5126 5.1384 24 6 -5.0238 -9.5923 5.1913 25 8 -4.4654 -8.3732 5.1158 26 6 0.4905 -5.0595 1.5021 27 6 0.7658 -4.7543 0.0284 28 1 0.9816 -5.6568 -0.5435 29 6 1.9323 -3.7288 0.0028 30 1 -0.4850 0.8401 0.0004 31 1 -0.6048 -1.7711 -0.6274 32 1 -0.5348 -2.4766 1.0182 33 1 -2.5038 -3.7584 -0.6203 34 1 -1.8966 -5.4173 -0.7919 35 1 -2.9411 -5.1325 1.3936 36 1 -1.8410 -3.7756 1.7525 37 1 -0.6189 -5.5363 3.7813 38 1 -1.1992 -7.6575 5.3392 39 1 -2.5396 -6.4888 5.4143 40 1 -1.8366 -10.2364 4.9505 41 1 -4.1656 -11.5849 5.1799 42 1 -6.0799 -9.7986 5.2841 43 1 0.5235 -4.1310 2.0721 44 1 1.2587 -5.7358 1.8771 45 1 2.5572 -3.8537 0.8872 46 1 2.5302 -3.8676 -0.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980205323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -4.127900 kcal Electronic energy + Delta-G solvation = -26844.577837 eV Core-core repulsion = 23122.053207 eV Total energy + Delta-G solvation = -3722.524630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.70409 -40.13112 -38.83464 -35.50348 -33.56360 -33.28983 -32.33840 -31.90490 -30.35185 -28.88808 -27.21714 -26.00152 -24.89648 -22.21225 -21.97874 -21.90169 -20.91900 -20.35360 -19.74907 -18.30596 -17.54389 -17.14387 -16.83256 -16.03060 -15.79440 -15.44504 -15.28336 -14.59533 -14.43111 -14.01746 -13.72813 -13.63101 -13.36111 -12.97813 -12.96830 -12.85700 -12.39002 -12.32938 -12.12932 -11.95244 -11.83246 -11.32388 -11.12884 -11.02603 -10.87441 -10.60310 -10.52222 -10.11236 -10.04221 -10.00253 -9.76207 -9.73143 -9.53886 -9.31999 -8.88471 -8.61633 -8.61377 -6.80207 -5.64936 -3.05317 1.54714 2.44672 2.56204 2.77501 3.28502 3.39020 3.44805 3.47117 4.34932 4.49536 4.71956 4.77708 4.86157 4.98983 5.02780 5.06417 5.09767 5.29824 5.46243 5.49231 5.59830 5.63371 5.65889 5.74695 5.77514 5.87561 5.89814 5.91426 5.94142 6.09877 6.31228 6.34038 6.37153 6.47207 6.51937 6.55342 6.62387 6.72217 6.76105 6.90164 6.97593 7.04101 7.49044 7.57455 7.65487 7.88920 8.18638 8.36403 9.22987 9.84204 10.50240 11.39447 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002503 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.705961 B =11182.230155 C =11338.269499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.912 3.088 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.606 5.606 10 C 0.165 3.835 11 C -0.113 4.113 12 H 0.064 0.936 13 C -0.096 4.096 14 C -0.125 4.125 15 C 0.148 3.852 16 H 0.085 0.915 17 N -0.722 5.722 18 C 0.513 3.487 19 O -0.531 6.531 20 C -0.064 4.064 21 C 0.009 3.991 22 C -0.198 4.198 23 C -0.214 4.214 24 C -0.040 4.040 25 O -0.172 6.172 26 C -0.114 4.114 27 C -0.089 4.089 28 H 0.075 0.925 29 C 0.139 3.861 30 H 0.250 0.750 31 H 0.100 0.900 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.202 0.798 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.831 -17.587 10.542 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.040 3.960 11 C -0.133 4.133 12 H 0.082 0.918 13 C -0.135 4.135 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.103 0.897 17 N -0.373 5.373 18 C 0.298 3.702 19 O -0.407 6.407 20 C -0.104 4.104 21 C -0.042 4.042 22 C -0.218 4.218 23 C -0.233 4.233 24 C -0.107 4.107 25 O -0.068 6.068 26 C -0.152 4.152 27 C -0.109 4.109 28 H 0.093 0.907 29 C 0.013 3.987 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.033 0.967 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.040 0.960 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -6.418 -17.523 9.918 21.133 hybrid contribution 0.756 0.842 0.376 1.193 sum -5.662 -16.681 10.294 20.403 Atomic orbital electron populations 1.69839 1.04818 1.24550 1.57809 1.24772 0.95715 0.97619 1.02657 0.86034 0.78657 0.83809 0.77223 1.20596 1.21801 1.21833 1.19117 0.90483 0.82549 1.42728 0.90582 1.44628 1.02064 0.99674 1.86875 1.21796 0.84368 0.91493 0.98315 1.21759 0.92579 0.98814 1.00142 0.91762 1.20577 0.97483 1.00221 0.95176 1.21737 0.98019 0.99287 0.97317 1.21035 0.95772 0.98427 0.80364 0.89708 1.46104 1.45688 1.36034 1.09428 1.20317 0.79427 0.79997 0.90466 1.90742 1.47278 1.51174 1.51534 1.20125 0.97711 0.96796 0.95738 1.21493 0.81485 0.95473 1.05740 1.21514 0.99800 0.92362 1.08096 1.21788 0.92417 1.00595 1.08518 1.23988 0.99263 0.81146 1.06327 1.83996 1.19952 1.32202 1.70647 1.21772 0.94442 1.00900 0.98083 1.22049 0.97188 0.97420 0.94212 0.90715 1.21581 0.93518 0.85986 0.97618 0.93874 0.88226 0.96678 0.91687 0.93078 0.92224 0.90998 0.76559 0.85914 0.86967 0.83638 0.83533 0.78176 0.90472 0.92312 0.95964 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.11 55.49 0.56 -26.00 16 2 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.06 10.28 -15.06 -0.15 -6.22 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.16 3.41 -169.62 -0.58 -15.74 16 10 C 0.16 3.86 4.77 -2.84 -0.01 3.84 16 11 C -0.11 -2.10 2.85 -90.77 -0.26 -2.36 16 12 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 13 C -0.10 -1.55 5.27 -28.51 -0.15 -1.70 16 14 C -0.13 -1.93 5.38 -27.20 -0.15 -2.08 16 15 C 0.15 2.07 2.44 -67.97 -0.17 1.90 16 16 H 0.08 1.30 7.57 -51.93 -0.39 0.90 16 17 N -0.72 -8.30 5.09 -53.84 -0.27 -8.58 16 18 C 0.51 6.41 7.80 -10.99 -0.09 6.32 16 19 O -0.53 -9.01 15.69 5.55 0.09 -8.93 16 20 C -0.06 -0.57 6.23 -29.04 -0.18 -0.75 16 21 C 0.01 0.10 5.81 -35.62 -0.21 -0.11 16 22 C -0.20 -2.14 10.81 -39.70 -0.43 -2.57 16 23 C -0.21 -2.10 10.91 -39.71 -0.43 -2.53 16 24 C -0.04 -0.38 12.09 29.41 0.36 -0.03 16 25 O -0.17 -2.10 10.65 5.68 0.06 -2.04 16 26 C -0.11 -1.68 4.10 -26.94 -0.11 -1.79 16 27 C -0.09 -1.50 3.61 -88.86 -0.32 -1.82 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 C 0.14 2.83 6.54 -2.44 -0.02 2.81 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.10 2.69 5.96 -51.93 -0.31 2.39 16 32 H 0.02 0.38 6.15 -51.93 -0.32 0.06 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.07 1.20 6.80 -51.93 -0.35 0.85 16 37 H 0.40 3.55 8.61 -40.82 -0.35 3.20 16 38 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.08 1.30 7.16 -51.93 -0.37 0.92 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -33.77 363.80 -9.22 -42.99 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.12 Total: 3.43 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.41 Total: -7.52 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: -0.29 Total: -50.32 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.15 Total: -10.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.77 -9.22 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.860 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds