Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99990 * 2 1 4 4 H 1.48492 * 109.47237 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46652 * 300.00410 * 3 2 1 6 6 H 1.48497 * 109.47197 * 59.99961 * 3 2 1 7 7 C 1.38808 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00254 * 359.97438 * 7 2 1 10 10 C 1.47822 * 125.64595 * 0.02562 * 9 7 2 11 11 C 1.53909 * 104.06097 * 156.64304 * 10 9 7 12 12 H 1.08997 * 109.20062 * 282.70954 * 11 10 9 13 13 C 1.50726 * 112.51121 * 161.20445 * 11 10 9 14 14 C 1.51738 * 112.35521 * 294.44191 * 13 11 10 15 15 C 1.53325 * 108.31786 * 301.72651 * 14 13 11 16 16 H 1.09004 * 109.70738 * 304.03592 * 15 14 13 17 17 N 1.46499 * 109.67990 * 183.50904 * 15 14 13 18 18 C 1.34777 * 119.99665 * 86.33034 * 17 15 14 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 15 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 15 21 21 C 1.50698 * 109.46944 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.79323 * 89.99586 * 21 20 18 23 23 C 1.41379 * 106.84331 * 179.97438 * 22 21 20 24 24 C 1.34510 * 106.84231 * 0.02562 * 23 22 21 25 25 O 1.34307 * 108.42148 * 359.73179 * 24 23 22 26 26 C 1.52596 * 108.40493 * 63.77690 * 15 14 13 27 27 C 1.52996 * 111.05886 * 297.65293 * 26 15 14 28 28 H 1.09006 * 112.07741 * 286.66912 * 27 26 15 29 29 C 1.47165 * 125.65403 * 180.02562 * 9 7 2 30 30 H 0.97008 * 119.99924 * 359.97438 * 1 2 3 31 31 H 1.09002 * 110.51644 * 37.99826 * 10 9 7 32 32 H 1.08999 * 110.51577 * 275.28590 * 10 9 7 33 33 H 1.09001 * 109.02950 * 55.81183 * 13 11 10 34 34 H 1.08997 * 109.02726 * 174.72457 * 13 11 10 35 35 H 1.09012 * 109.91104 * 181.84476 * 14 13 11 36 36 H 1.09001 * 109.34754 * 61.28487 * 14 13 11 37 37 H 0.97001 * 119.99790 * 266.04747 * 17 15 14 38 38 H 1.09003 * 109.47112 * 299.99065 * 20 18 17 39 39 H 1.08993 * 109.47916 * 59.99687 * 20 18 17 40 40 H 1.08001 * 126.57962 * 0.04112 * 22 21 20 41 41 H 1.07997 * 126.58005 * 180.02562 * 23 22 21 42 42 H 1.08001 * 125.79445 * 180.02562 * 24 23 22 43 43 H 1.09002 * 109.15788 * 58.05883 * 26 15 14 44 44 H 1.08997 * 109.15796 * 177.23956 * 26 15 14 45 45 H 1.09004 * 109.96354 * 59.66800 * 29 9 7 46 46 H 1.09002 * 109.96333 * 298.42963 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1454 -2.5335 0.0017 11 6 -0.3826 -3.9349 -0.5889 12 1 -0.2535 -3.8946 -1.6705 13 6 -1.7555 -4.4701 -0.2715 14 6 -1.9499 -4.7164 1.2130 15 6 -0.8788 -5.7087 1.6811 16 1 -0.9345 -6.6187 1.0836 17 7 -1.0903 -6.0327 3.0941 18 6 -1.9355 -7.0244 3.4388 19 8 -2.5248 -7.6450 2.5795 20 6 -2.1483 -7.3617 4.8920 21 6 -3.1327 -8.4972 5.0051 22 6 -2.8252 -9.8067 5.0180 23 6 -4.0442 -10.5126 5.1384 24 6 -5.0238 -9.5923 5.1913 25 8 -4.4654 -8.3732 5.1158 26 6 0.4905 -5.0595 1.5021 27 6 0.7658 -4.7543 0.0284 28 1 0.9816 -5.6568 -0.5435 29 6 1.9323 -3.7288 0.0028 30 1 -0.4850 0.8401 0.0004 31 1 -0.6048 -1.7711 -0.6274 32 1 -0.5348 -2.4766 1.0182 33 1 -2.5038 -3.7584 -0.6203 34 1 -1.8966 -5.4173 -0.7919 35 1 -2.9411 -5.1325 1.3936 36 1 -1.8410 -3.7756 1.7525 37 1 -0.6189 -5.5363 3.7813 38 1 -1.1992 -7.6575 5.3392 39 1 -2.5396 -6.4888 5.4143 40 1 -1.8366 -10.2364 4.9505 41 1 -4.1656 -11.5849 5.1799 42 1 -6.0799 -9.7986 5.2841 43 1 0.5235 -4.1310 2.0721 44 1 1.2587 -5.7358 1.8771 45 1 2.5572 -3.8537 0.8872 46 1 2.5302 -3.8676 -0.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980205323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -25.430200 kcal Electronic energy + Delta-G solvation = -26845.501574 eV Core-core repulsion = 23122.053207 eV Total energy + Delta-G solvation = -3723.448367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.45516 -41.34905 -40.12339 -36.94795 -35.00775 -34.11804 -33.68584 -33.04051 -31.78333 -30.45918 -28.21302 -27.43880 -26.73993 -23.64085 -23.20301 -22.65478 -22.15888 -21.40534 -21.03852 -19.65761 -18.84605 -18.35376 -18.08512 -17.18017 -16.78191 -16.66367 -16.45132 -16.26552 -15.68519 -15.31462 -15.05648 -14.86101 -14.63565 -14.08199 -13.90848 -13.84706 -13.70906 -13.56772 -13.52740 -13.38559 -13.01420 -12.81078 -12.66505 -12.64748 -12.55443 -12.14885 -12.01094 -11.83254 -11.60462 -11.37058 -11.14301 -10.94397 -10.87697 -10.77566 -10.66078 -9.99420 -9.36126 -8.81944 -7.74916 -5.17322 0.78501 1.46816 1.47492 1.57664 1.62834 1.70407 2.05993 2.39508 2.51210 3.35435 3.61652 3.64499 3.73864 3.83835 3.90054 4.04976 4.16772 4.17434 4.20051 4.28176 4.37442 4.40680 4.50146 4.53782 4.58854 4.62548 4.73403 4.88383 4.95003 4.98428 5.02642 5.04143 5.09454 5.15879 5.24013 5.27305 5.30713 5.40030 5.51565 5.57775 5.61456 5.64864 5.77294 5.90426 6.23248 6.33813 6.58442 7.14223 7.26630 7.82599 8.47444 9.27407 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028030 B = 0.002503 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.705961 B =11182.230155 C =11338.269499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.069 4.069 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.079 0.921 9 N -0.628 5.628 10 C 0.174 3.826 11 C -0.102 4.102 12 H 0.056 0.944 13 C -0.092 4.092 14 C -0.119 4.119 15 C 0.158 3.842 16 H 0.082 0.918 17 N -0.712 5.712 18 C 0.513 3.487 19 O -0.579 6.579 20 C -0.056 4.056 21 C -0.016 4.016 22 C -0.211 4.211 23 C -0.228 4.228 24 C -0.047 4.047 25 O -0.196 6.196 26 C -0.103 4.103 27 C -0.077 4.077 28 H 0.106 0.894 29 C 0.133 3.867 30 H 0.244 0.756 31 H 0.058 0.942 32 H -0.003 1.003 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.415 0.585 38 H 0.159 0.841 39 H 0.132 0.868 40 H 0.159 0.841 41 H 0.167 0.833 42 H 0.233 0.767 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.988 -19.372 11.617 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.354 5.354 10 C 0.049 3.951 11 C -0.121 4.121 12 H 0.075 0.925 13 C -0.130 4.130 14 C -0.157 4.157 15 C 0.054 3.946 16 H 0.100 0.900 17 N -0.363 5.363 18 C 0.301 3.699 19 O -0.458 6.458 20 C -0.095 4.095 21 C -0.067 4.067 22 C -0.231 4.231 23 C -0.247 4.247 24 C -0.114 4.114 25 O -0.092 6.092 26 C -0.141 4.141 27 C -0.096 4.096 28 H 0.124 0.876 29 C 0.008 3.992 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.015 0.985 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.252 0.748 38 H 0.177 0.823 39 H 0.150 0.850 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.249 0.751 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.049 0.951 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -5.536 -19.322 11.021 22.922 hybrid contribution 0.487 1.361 0.030 1.445 sum -5.049 -17.961 11.051 21.685 Atomic orbital electron populations 1.70103 1.06109 1.24692 1.58912 1.25585 0.96595 1.00798 1.03138 0.85033 0.78146 0.79698 0.76615 1.19143 1.22146 1.21990 1.19473 0.90941 0.83897 1.41941 0.90307 1.44930 1.02887 1.00854 1.86773 1.21492 0.83636 0.93337 0.96631 1.21590 0.94777 0.96356 0.99391 0.92540 1.20524 0.95698 1.00780 0.96034 1.21645 0.98594 0.98893 0.96587 1.20752 0.94547 0.97467 0.81859 0.90034 1.45958 1.45620 1.35945 1.08790 1.20921 0.78287 0.79080 0.91648 1.90722 1.49072 1.52840 1.53204 1.20236 0.99019 0.97102 0.93187 1.21978 0.81622 0.96537 1.06516 1.21879 1.00841 0.92592 1.07741 1.22167 0.92232 1.01813 1.08513 1.24734 1.00843 0.80448 1.05338 1.83983 1.20620 1.33496 1.71139 1.21634 0.95707 1.00480 0.96298 1.22061 0.94404 0.97203 0.95964 0.87607 1.21784 0.94840 0.84771 0.97816 0.94574 0.92394 0.98528 0.92502 0.91031 0.92478 0.92776 0.74793 0.82331 0.84964 0.82346 0.81508 0.75066 0.92702 0.89599 0.95096 0.96208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.56 10.11 21.65 0.22 -56.34 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.71 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.23 -12.99 10.28 84.03 0.86 -12.13 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.63 -31.80 3.41 -690.55 -2.35 -34.16 16 10 C 0.17 8.38 4.77 86.43 0.41 8.80 16 11 C -0.10 -3.74 2.85 -10.89 -0.03 -3.77 16 12 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 13 C -0.09 -2.92 5.27 29.44 0.16 -2.77 16 14 C -0.12 -3.60 5.38 30.29 0.16 -3.43 16 15 C 0.16 4.13 2.44 44.97 0.11 4.24 16 16 H 0.08 2.28 7.57 -2.39 -0.02 2.26 16 17 N -0.71 -14.83 5.09 -442.65 -2.25 -17.08 16 18 C 0.51 11.87 7.80 87.66 0.68 12.55 16 19 O -0.58 -19.04 15.69 -3.04 -0.05 -19.09 16 20 C -0.06 -0.86 6.23 29.10 0.18 -0.68 16 21 C -0.02 -0.35 5.81 24.83 0.14 -0.21 16 22 C -0.21 -4.25 10.81 22.19 0.24 -4.01 16 23 C -0.23 -4.14 10.91 22.19 0.24 -3.90 16 24 C -0.05 -0.84 12.09 66.97 0.81 -0.03 16 25 O -0.20 -4.60 10.65 -2.59 -0.03 -4.63 16 26 C -0.10 -2.81 4.10 30.46 0.12 -2.68 16 27 C -0.08 -2.44 3.61 -9.65 -0.03 -2.47 16 28 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 29 C 0.13 5.25 6.54 87.06 0.57 5.82 16 30 H 0.24 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.06 3.29 5.96 -2.39 -0.01 3.28 16 32 H 0.00 -0.16 6.15 -2.39 -0.01 -0.18 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.05 1.83 6.80 -2.39 -0.02 1.81 16 37 H 0.42 6.28 8.61 -92.71 -0.80 5.49 16 38 H 0.16 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.23 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.05 1.77 7.16 -2.39 -0.02 1.76 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.03 1.18 7.74 -2.39 -0.02 1.16 16 46 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.77 363.80 2.85 -72.91 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.19 Total: 18.76 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 5.10 Total: -8.09 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.39 Total: -107.58 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.08 Total: -23.72 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.77 2.85 -72.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980205323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.484 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds