Wall clock time and date at job start Tue Mar 31 2020 12:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48502 * 109.47019 * 269.99834 * 3 2 1 5 5 H 1.48500 * 109.47202 * 29.99659 * 3 2 1 6 6 H 1.48497 * 109.47345 * 150.00147 * 3 2 1 7 7 C 1.38816 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00167 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99820 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.01316 * 37.94746 * 10 9 7 12 12 C 1.51493 * 108.27682 * 280.90324 * 10 9 7 13 13 C 1.52670 * 110.82187 * 191.67205 * 12 10 9 14 14 C 1.51466 * 109.61330 * 59.28107 * 13 12 10 15 15 C 1.52896 * 110.43025 * 296.90065 * 14 13 12 16 16 H 1.09001 * 111.17752 * 287.54997 * 15 14 13 17 17 C 1.54804 * 107.41498 * 165.51782 * 15 14 13 18 18 N 1.46941 * 107.27912 * 262.33959 * 17 15 14 19 19 C 1.34785 * 125.40187 * 178.42030 * 18 17 15 20 20 O 1.21280 * 119.99805 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99810 * 0.02562 * 19 18 17 22 22 C 1.50700 * 109.46699 * 180.02562 * 21 19 18 23 23 C 1.41385 * 126.58187 * 90.00677 * 22 21 19 24 24 C 1.34512 * 106.83926 * 180.25995 * 23 22 21 25 25 O 1.34305 * 108.42433 * 359.63135 * 24 23 22 26 26 C 1.34305 * 109.47225 * 0.37505 * 25 24 23 27 27 C 1.47227 * 109.19329 * 358.68838 * 18 17 15 28 28 C 1.49576 * 108.27830 * 155.00177 * 10 9 7 29 29 H 1.09003 * 107.98830 * 281.13199 * 28 10 9 30 30 H 0.96995 * 119.99619 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00274 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.20642 * 312.02137 * 12 10 9 33 33 H 1.09003 * 109.20558 * 71.37457 * 12 10 9 34 34 H 1.09001 * 109.62149 * 179.76674 * 13 12 10 35 35 H 1.08997 * 109.61876 * 300.13015 * 13 12 10 36 36 H 1.08997 * 110.59534 * 175.61441 * 14 13 12 37 37 H 1.08998 * 107.50651 * 56.23314 * 14 13 12 38 38 H 1.08998 * 109.87782 * 142.91885 * 17 15 14 39 39 H 1.09001 * 110.00590 * 21.83377 * 17 15 14 40 40 H 1.09005 * 109.47178 * 60.00305 * 21 19 18 41 41 H 1.09000 * 109.47367 * 300.00226 * 21 19 18 42 42 H 1.08002 * 126.57514 * 359.97438 * 23 22 21 43 43 H 1.07998 * 125.78467 * 179.77218 * 24 23 22 44 44 H 1.08000 * 125.78555 * 179.79179 * 26 25 24 45 45 H 1.08999 * 110.24886 * 100.20004 * 27 18 17 46 46 H 1.08999 * 110.24503 * 222.19736 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5729 -3.1715 -0.6367 12 6 4.1134 -3.0188 1.4135 13 6 5.0948 -4.1810 1.5439 14 6 6.4899 -3.7107 1.1881 15 6 6.5454 -3.2609 -0.2721 16 1 6.4978 -4.1140 -0.9490 17 6 7.8589 -2.4641 -0.4619 18 7 7.5227 -1.0374 -0.3588 19 6 8.4031 -0.0199 -0.4391 20 8 8.0168 1.1254 -0.3399 21 6 9.8673 -0.3056 -0.6522 22 6 10.6300 0.9932 -0.7044 23 6 11.2112 1.6736 0.3902 24 6 11.7850 2.7859 -0.1025 25 8 11.5903 2.8110 -1.4312 26 6 10.8879 1.7278 -1.8013 27 6 6.0726 -0.8959 -0.1474 28 6 5.4617 -2.2336 -0.5986 29 1 5.3477 -2.2018 -1.6821 30 1 -0.4849 0.8400 0.0004 31 1 3.8646 -0.3622 0.0007 32 1 4.4014 -2.2270 2.1049 33 1 3.1113 -3.3668 1.6641 34 1 5.0831 -4.5570 2.5669 35 1 4.8106 -4.9787 0.8576 36 1 7.2160 -4.5074 1.3500 37 1 6.7270 -2.8674 1.8367 38 1 8.2819 -2.6753 -1.4440 39 1 8.5742 -2.7335 0.3153 40 1 9.9998 -0.8431 -1.5912 41 1 10.2424 -0.9140 0.1707 42 1 11.1934 1.3625 1.4243 43 1 12.3145 3.5311 0.4724 44 1 10.5822 1.4873 -2.8088 45 1 5.8606 -0.7181 0.9069 46 1 5.6808 -0.0797 -0.7545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992665544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:09 Heat of formation + Delta-G solvation = -6.578691 kcal Electronic energy + Delta-G solvation = -27282.304404 eV Core-core repulsion = 23559.673500 eV Total energy + Delta-G solvation = -3722.630905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.68904 -40.63181 -38.70844 -35.68138 -34.21061 -34.08698 -31.79611 -31.17584 -30.33616 -29.35306 -28.04789 -26.89215 -24.46414 -23.30001 -21.77773 -21.76081 -20.98255 -20.73394 -19.32798 -18.51454 -17.73147 -17.49638 -16.90808 -16.17957 -15.96398 -15.42376 -15.02058 -14.82061 -14.78247 -14.15871 -14.03932 -13.70646 -13.51498 -13.06414 -12.97844 -12.92307 -12.71078 -12.61547 -12.52914 -12.25276 -12.04605 -11.72613 -11.37230 -11.19687 -11.10904 -10.92456 -10.82581 -10.35517 -10.09598 -10.02576 -9.96776 -9.78560 -9.63212 -9.53243 -8.88435 -8.67867 -8.57393 -7.26471 -5.76128 -3.11942 1.62968 2.36144 2.65743 2.98707 3.12483 3.41720 3.46708 3.50803 4.40900 4.43232 4.56303 4.58050 4.61567 4.70062 4.79403 4.86688 5.12695 5.18116 5.22616 5.25272 5.33120 5.33716 5.48869 5.51060 5.56389 5.60675 5.68693 5.72383 5.79000 5.82808 5.91202 5.99398 6.01596 6.09968 6.19029 6.26960 6.30122 6.35830 6.41173 6.43063 6.64254 6.84381 6.95387 7.06112 7.54141 7.99447 8.20827 8.42738 9.20856 9.93860 10.12189 11.42091 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003879 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.578236 B = 7215.776913 C = 8961.726975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.754 5.754 10 C 0.195 3.805 11 H 0.052 0.948 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.085 4.085 16 H 0.094 0.906 17 C 0.102 3.898 18 N -0.618 5.618 19 C 0.523 3.477 20 O -0.530 6.530 21 C -0.064 4.064 22 C -0.164 4.164 23 C -0.199 4.199 24 C -0.045 4.045 25 O -0.177 6.177 26 C -0.027 4.027 27 C 0.114 3.886 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.201 0.799 44 H 0.200 0.800 45 H 0.070 0.930 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.374 -6.446 -0.662 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.188 4.188 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.398 5.398 10 C 0.086 3.914 11 H 0.070 0.930 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.149 4.149 15 C -0.104 4.104 16 H 0.112 0.888 17 C -0.021 4.021 18 N -0.353 5.353 19 C 0.311 3.689 20 O -0.406 6.406 21 C -0.104 4.104 22 C -0.165 4.165 23 C -0.218 4.218 24 C -0.112 4.112 25 O -0.073 6.073 26 C -0.095 4.095 27 C -0.008 4.008 28 C -0.111 4.111 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.163 0.837 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.088 0.912 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 25.059 -5.566 -0.831 25.683 hybrid contribution 0.337 1.104 0.252 1.181 sum 25.395 -4.462 -0.579 25.791 Atomic orbital electron populations 1.69695 1.05065 1.25809 1.57559 1.24633 0.95163 0.97062 1.01971 0.86685 0.79396 0.85244 0.78025 1.21014 1.21619 1.20196 1.19055 0.80570 0.94643 1.43025 0.89104 1.43066 1.04163 1.01905 1.90673 1.19008 0.88807 0.89385 0.94192 0.92951 1.21819 0.98981 0.96691 0.99424 1.21175 0.94824 0.98823 1.00715 1.21315 0.97814 1.00748 0.94991 1.21827 0.92928 0.97581 0.98109 0.88818 1.22317 0.98035 0.80573 1.01185 1.48483 1.08480 1.06197 1.72097 1.20253 0.87434 0.84226 0.76994 1.90751 1.79819 1.20539 1.49461 1.19956 0.90760 0.95118 1.04568 1.19807 1.04144 0.99093 0.93498 1.21664 1.03264 0.96846 1.00000 1.23942 1.05291 1.00850 0.81145 1.84058 1.58192 1.40552 1.24461 1.23781 0.98894 0.86723 1.00051 1.22036 0.78472 0.98654 1.01682 1.21204 0.95093 0.93242 1.01578 0.90695 0.93067 0.80430 0.92538 0.91511 0.92419 0.92338 0.91937 0.92206 0.91593 0.91185 0.88214 0.88101 0.83666 0.78232 0.78361 0.91162 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 23.00 27.74 -169.99 -4.71 18.28 16 4 H -0.28 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 6 H -0.28 -7.00 6.52 56.52 0.37 -6.64 16 7 C -0.24 -6.78 10.27 -15.06 -0.15 -6.93 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.51 4.77 -55.83 -0.27 -17.78 16 10 C 0.20 3.52 2.53 -70.38 -0.18 3.34 16 11 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 12 C -0.13 -2.13 5.33 -27.66 -0.15 -2.28 16 13 C -0.12 -1.42 5.85 -27.68 -0.16 -1.59 16 14 C -0.11 -1.16 4.77 -27.56 -0.13 -1.29 16 15 C -0.09 -0.90 3.31 -89.80 -0.30 -1.20 16 16 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 17 C 0.10 0.97 5.93 -2.85 -0.02 0.95 16 18 N -0.62 -8.33 3.33 -171.12 -0.57 -8.90 16 19 C 0.52 7.57 7.83 -10.98 -0.09 7.48 16 20 O -0.53 -10.29 16.33 5.56 0.09 -10.20 16 21 C -0.06 -0.63 5.39 -29.03 -0.16 -0.79 16 22 C -0.16 -1.87 4.66 -104.74 -0.49 -2.36 16 23 C -0.20 -2.17 10.87 -39.70 -0.43 -2.61 16 24 C -0.05 -0.45 12.09 29.42 0.36 -0.09 16 25 O -0.18 -2.03 10.65 5.70 0.06 -1.97 16 26 C -0.03 -0.29 12.01 29.42 0.35 0.06 16 27 C 0.11 1.88 4.73 -3.22 -0.02 1.86 16 28 C -0.09 -1.35 2.48 -91.96 -0.23 -1.57 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 31 H 0.36 8.51 3.49 -40.82 -0.14 8.37 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.70 7.97 -51.93 -0.41 0.29 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.20 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 45 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 46 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -35.62 365.78 -8.26 -43.88 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.27 Total: 6.77 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -1.88 Total: -6.87 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.06 Total: -55.40 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.15 Total: -12.17 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.71 Total: 18.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.62 -8.26 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.302 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds