Wall clock time and date at job start Tue Mar 31 2020 12:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48502 * 109.47019 * 269.99834 * 3 2 1 5 5 H 1.48500 * 109.47202 * 29.99659 * 3 2 1 6 6 H 1.48497 * 109.47345 * 150.00147 * 3 2 1 7 7 C 1.38816 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00167 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99770 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99820 * 180.02562 * 9 7 2 11 11 H 1.09001 * 108.01316 * 37.94746 * 10 9 7 12 12 C 1.51493 * 108.27682 * 280.90324 * 10 9 7 13 13 C 1.52670 * 110.82187 * 191.67205 * 12 10 9 14 14 C 1.51466 * 109.61330 * 59.28107 * 13 12 10 15 15 C 1.52896 * 110.43025 * 296.90065 * 14 13 12 16 16 H 1.09001 * 111.17752 * 287.54997 * 15 14 13 17 17 C 1.54804 * 107.41498 * 165.51782 * 15 14 13 18 18 N 1.46941 * 107.27912 * 262.33959 * 17 15 14 19 19 C 1.34785 * 125.40187 * 178.42030 * 18 17 15 20 20 O 1.21280 * 119.99805 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.99810 * 0.02562 * 19 18 17 22 22 C 1.50700 * 109.46699 * 180.02562 * 21 19 18 23 23 C 1.41385 * 126.58187 * 90.00677 * 22 21 19 24 24 C 1.34512 * 106.83926 * 180.25995 * 23 22 21 25 25 O 1.34305 * 108.42433 * 359.63135 * 24 23 22 26 26 C 1.34305 * 109.47225 * 0.37505 * 25 24 23 27 27 C 1.47227 * 109.19329 * 358.68838 * 18 17 15 28 28 C 1.49576 * 108.27830 * 155.00177 * 10 9 7 29 29 H 1.09003 * 107.98830 * 281.13199 * 28 10 9 30 30 H 0.96995 * 119.99619 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00274 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.20642 * 312.02137 * 12 10 9 33 33 H 1.09003 * 109.20558 * 71.37457 * 12 10 9 34 34 H 1.09001 * 109.62149 * 179.76674 * 13 12 10 35 35 H 1.08997 * 109.61876 * 300.13015 * 13 12 10 36 36 H 1.08997 * 110.59534 * 175.61441 * 14 13 12 37 37 H 1.08998 * 107.50651 * 56.23314 * 14 13 12 38 38 H 1.08998 * 109.87782 * 142.91885 * 17 15 14 39 39 H 1.09001 * 110.00590 * 21.83377 * 17 15 14 40 40 H 1.09005 * 109.47178 * 60.00305 * 21 19 18 41 41 H 1.09000 * 109.47367 * 300.00226 * 21 19 18 42 42 H 1.08002 * 126.57514 * 359.97438 * 23 22 21 43 43 H 1.07998 * 125.78467 * 179.77218 * 24 23 22 44 44 H 1.08000 * 125.78555 * 179.79179 * 26 25 24 45 45 H 1.08999 * 110.24886 * 100.20004 * 27 18 17 46 46 H 1.08999 * 110.24503 * 222.19736 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 1 3.5729 -3.1715 -0.6367 12 6 4.1134 -3.0188 1.4135 13 6 5.0948 -4.1810 1.5439 14 6 6.4899 -3.7107 1.1881 15 6 6.5454 -3.2609 -0.2721 16 1 6.4978 -4.1140 -0.9490 17 6 7.8589 -2.4641 -0.4619 18 7 7.5227 -1.0374 -0.3588 19 6 8.4031 -0.0199 -0.4391 20 8 8.0168 1.1254 -0.3399 21 6 9.8673 -0.3056 -0.6522 22 6 10.6300 0.9932 -0.7044 23 6 11.2112 1.6736 0.3902 24 6 11.7850 2.7859 -0.1025 25 8 11.5903 2.8110 -1.4312 26 6 10.8879 1.7278 -1.8013 27 6 6.0726 -0.8959 -0.1474 28 6 5.4617 -2.2336 -0.5986 29 1 5.3477 -2.2018 -1.6821 30 1 -0.4849 0.8400 0.0004 31 1 3.8646 -0.3622 0.0007 32 1 4.4014 -2.2270 2.1049 33 1 3.1113 -3.3668 1.6641 34 1 5.0831 -4.5570 2.5669 35 1 4.8106 -4.9787 0.8576 36 1 7.2160 -4.5074 1.3500 37 1 6.7270 -2.8674 1.8367 38 1 8.2819 -2.6753 -1.4440 39 1 8.5742 -2.7335 0.3153 40 1 9.9998 -0.8431 -1.5912 41 1 10.2424 -0.9140 0.1707 42 1 11.1934 1.3625 1.4243 43 1 12.3145 3.5311 0.4724 44 1 10.5822 1.4873 -2.8088 45 1 5.8606 -0.7181 0.9069 46 1 5.6808 -0.0797 -0.7545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992665544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:08 Heat of formation + Delta-G solvation = -30.549884 kcal Electronic energy + Delta-G solvation = -27283.343873 eV Core-core repulsion = 23559.673500 eV Total energy + Delta-G solvation = -3723.670373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.45292 -41.73940 -39.88809 -37.10625 -35.60884 -34.96594 -33.70429 -32.26475 -31.20488 -30.86108 -29.03121 -27.96874 -25.78048 -24.99927 -22.88330 -22.51462 -22.17553 -21.69883 -20.47343 -19.92343 -19.27066 -18.31192 -18.06500 -17.33970 -16.84525 -16.74666 -16.46462 -16.07873 -15.82151 -15.52362 -15.07957 -14.87560 -14.82119 -14.52477 -14.14989 -14.10686 -13.83132 -13.69634 -13.63074 -13.35625 -13.25345 -12.97856 -12.82236 -12.49031 -12.43382 -12.38554 -12.10873 -12.00162 -11.87223 -11.34173 -11.25044 -11.09771 -11.05259 -10.80031 -10.54375 -9.66746 -9.43923 -9.33055 -8.08148 -5.38734 0.86289 1.27396 1.30665 1.34495 1.53527 1.60755 2.12788 2.32250 2.39117 3.23622 3.26811 3.48329 3.70407 3.73505 3.84565 3.93518 4.06281 4.14477 4.17242 4.23552 4.26660 4.39277 4.45050 4.53284 4.57484 4.59387 4.68063 4.75791 4.78481 4.84309 4.88803 4.92952 5.07590 5.10466 5.20583 5.24042 5.28066 5.29329 5.38654 5.44631 5.57634 5.58230 5.68485 5.77395 6.17639 6.19000 6.54126 7.03332 7.14966 7.81172 7.96600 9.13828 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.003879 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.578236 B = 7215.776913 C = 8961.726975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.055 4.055 3 Si 0.935 3.065 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.270 1.270 7 C -0.218 4.218 8 H 0.067 0.933 9 N -0.761 5.761 10 C 0.191 3.809 11 H 0.045 0.955 12 C -0.124 4.124 13 C -0.110 4.110 14 C -0.107 4.107 15 C -0.077 4.077 16 H 0.127 0.873 17 C 0.099 3.901 18 N -0.615 5.615 19 C 0.516 3.484 20 O -0.593 6.593 21 C -0.051 4.051 22 C -0.184 4.184 23 C -0.222 4.222 24 C -0.048 4.048 25 O -0.192 6.192 26 C -0.041 4.041 27 C 0.117 3.883 28 C -0.086 4.086 29 H 0.073 0.927 30 H 0.257 0.743 31 H 0.360 0.640 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.232 0.768 44 H 0.221 0.779 45 H 0.046 0.954 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.366 -8.740 -0.970 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.247 4.247 3 Si 0.764 3.236 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.350 4.350 8 H 0.085 0.915 9 N -0.405 5.405 10 C 0.084 3.916 11 H 0.063 0.937 12 C -0.164 4.164 13 C -0.148 4.148 14 C -0.144 4.144 15 C -0.096 4.096 16 H 0.145 0.855 17 C -0.022 4.022 18 N -0.348 5.348 19 C 0.307 3.693 20 O -0.473 6.473 21 C -0.090 4.090 22 C -0.185 4.185 23 C -0.241 4.241 24 C -0.115 4.115 25 O -0.088 6.088 26 C -0.108 4.108 27 C -0.007 4.007 28 C -0.105 4.105 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.194 0.806 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.173 0.827 43 H 0.248 0.752 44 H 0.237 0.763 45 H 0.064 0.936 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 29.119 -7.940 -1.138 30.204 hybrid contribution -0.930 1.739 0.376 2.008 sum 28.189 -6.200 -0.762 28.873 Atomic orbital electron populations 1.69831 1.06574 1.26321 1.60366 1.25248 0.95841 1.00092 1.03492 0.85732 0.78296 0.81670 0.77922 1.20876 1.21798 1.19563 1.19083 0.82620 0.93422 1.39842 0.91534 1.43226 1.02709 1.04095 1.90490 1.19287 0.90296 0.86802 0.95192 0.93694 1.21671 0.99109 0.98103 0.97511 1.21117 0.94687 0.96865 1.02092 1.21348 0.97197 1.01459 0.94395 1.21924 0.91281 0.97394 0.99018 0.85527 1.22662 0.97873 0.77327 1.04357 1.48571 1.06735 1.08253 1.71253 1.21185 0.89227 0.83368 0.75557 1.90722 1.81069 1.23172 1.52328 1.20014 0.86594 0.95048 1.07347 1.20158 1.04518 1.00117 0.93754 1.21991 1.03941 0.97550 1.00651 1.24623 1.04815 1.01276 0.80792 1.84055 1.58501 1.40972 1.25281 1.24318 0.98779 0.86513 1.01210 1.21727 0.81163 0.98389 0.99397 1.21068 0.94357 0.94181 1.00925 0.90810 0.93377 0.80615 0.94473 0.94312 0.91174 0.90833 0.87781 0.93740 0.88218 0.88000 0.84806 0.85330 0.82718 0.75178 0.76286 0.93584 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 2 C -0.05 -3.36 5.50 84.86 0.47 -2.89 16 3 Si 0.93 49.43 27.74 68.60 1.90 51.33 16 4 H -0.28 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 6 H -0.27 -13.79 6.52 99.48 0.65 -13.15 16 7 C -0.22 -12.64 10.27 84.03 0.86 -11.77 16 8 H 0.07 4.12 8.06 -2.91 -0.02 4.10 16 9 N -0.76 -36.43 4.77 -330.55 -1.58 -38.01 16 10 C 0.19 6.93 2.53 43.40 0.11 7.04 16 11 H 0.04 1.70 8.06 -2.39 -0.02 1.68 16 12 C -0.12 -4.11 5.33 29.99 0.16 -3.95 16 13 C -0.11 -2.34 5.85 29.98 0.18 -2.16 16 14 C -0.11 -1.73 4.77 30.06 0.14 -1.58 16 15 C -0.08 -1.27 3.31 -10.26 -0.03 -1.30 16 16 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 17 C 0.10 1.33 5.93 86.91 0.52 1.85 16 18 N -0.61 -15.13 3.33 -813.69 -2.71 -17.84 16 19 C 0.52 14.04 7.83 87.66 0.69 14.73 16 20 O -0.59 -23.27 16.33 -3.03 -0.05 -23.32 16 21 C -0.05 -0.82 5.39 29.10 0.16 -0.67 16 22 C -0.18 -3.84 4.66 -19.94 -0.09 -3.93 16 23 C -0.22 -4.55 10.87 22.19 0.24 -4.30 16 24 C -0.05 -0.90 12.09 66.97 0.81 -0.09 16 25 O -0.19 -4.21 10.65 -2.52 -0.03 -4.23 16 26 C -0.04 -0.83 12.01 66.97 0.80 -0.03 16 27 C 0.12 3.86 4.73 86.52 0.41 4.27 16 28 C -0.09 -2.39 2.48 -11.66 -0.03 -2.42 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.36 17.50 3.49 -92.71 -0.32 17.18 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.04 0.89 7.97 -2.39 -0.02 0.87 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.84 7.70 -2.39 -0.02 0.83 16 40 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 43 H 0.23 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.22 3.09 8.06 -2.91 -0.02 3.07 16 45 H 0.05 1.72 8.04 -2.39 -0.02 1.70 16 46 H 0.04 1.49 7.49 -2.39 -0.02 1.47 16 Total: -1.00 -84.39 365.78 3.81 -80.58 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.59 Total: 22.65 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.39 Total: -7.21 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -3.98 Total: -119.78 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.08 Total: -27.56 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.90 Total: 51.33 kcal Total: -84.39 3.81 -80.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.025 kcal (2) G-P(sol) polarization free energy of solvation -84.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds