Wall clock time and date at job start Tue Mar 31 2020 12:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.09001 * 109.93441 * 33.83819 * 10 9 7 12 12 C 1.53846 * 109.93904 * 272.58934 * 10 9 7 13 13 C 1.52529 * 111.65410 * 183.42271 * 12 10 9 14 14 C 1.53814 * 111.71015 * 54.04422 * 13 12 10 15 15 C 1.51619 * 107.02737 * 302.46209 * 14 13 12 16 16 H 1.08994 * 111.27381 * 304.35097 * 15 14 13 17 17 C 1.53062 * 116.66598 * 176.22844 * 15 14 13 18 18 N 1.48666 * 103.44665 * 204.13028 * 17 15 14 19 19 C 1.34777 * 125.78168 * 204.37581 * 18 17 15 20 20 O 1.21278 * 119.99370 * 180.02562 * 19 18 17 21 21 C 1.50692 * 120.00250 * 0.02562 * 19 18 17 22 22 C 1.50701 * 109.47264 * 179.97438 * 21 19 18 23 23 C 1.41380 * 126.57867 * 269.71699 * 22 21 19 24 24 C 1.34518 * 106.84166 * 179.83205 * 23 22 21 25 25 O 1.34306 * 108.41820 * 0.42297 * 24 23 22 26 26 C 1.34308 * 109.47577 * 359.72487 * 25 24 23 27 27 C 1.48242 * 108.42809 * 24.38223 * 18 17 15 28 28 C 1.51443 * 109.93958 * 154.99746 * 10 9 7 29 29 H 1.09005 * 109.86633 * 64.71217 * 28 10 9 30 30 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.04257 * 303.97916 * 12 10 9 33 33 H 1.08998 * 109.04471 * 62.86172 * 12 10 9 34 34 H 1.09003 * 109.02885 * 293.47299 * 13 12 10 35 35 H 1.08994 * 108.97338 * 174.58364 * 13 12 10 36 36 H 1.08999 * 109.94394 * 183.08473 * 14 13 12 37 37 H 1.08998 * 109.93919 * 61.83994 * 14 13 12 38 38 H 1.09006 * 110.62385 * 85.64767 * 17 15 14 39 39 H 1.09000 * 110.63034 * 322.62380 * 17 15 14 40 40 H 1.09003 * 109.46920 * 299.99569 * 21 19 18 41 41 H 1.09000 * 109.47607 * 59.99845 * 21 19 18 42 42 H 1.08006 * 126.57821 * 359.97438 * 23 22 21 43 43 H 1.07997 * 125.79311 * 180.18461 * 24 23 22 44 44 H 1.07995 * 125.78611 * 180.02562 * 26 25 24 45 45 H 1.09004 * 110.16602 * 244.08337 * 27 18 17 46 46 H 1.08998 * 110.23087 * 122.31957 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9828 -3.5548 0.5593 12 6 2.3713 -4.0741 -1.4554 13 6 3.0608 -5.4335 -1.5124 14 6 2.2538 -6.5123 -0.7704 15 6 2.0803 -6.0333 0.6577 16 1 3.0425 -5.8174 1.1220 17 6 1.2242 -6.9082 1.5765 18 7 0.7510 -5.9574 2.6168 19 6 0.3669 -6.2840 3.8668 20 8 -0.0027 -5.4195 4.6328 21 6 0.3967 -7.7233 4.3124 22 6 -0.0766 -7.8170 5.7401 23 6 0.7270 -7.7407 6.9008 24 6 -0.0985 -7.8672 7.9553 25 8 -1.3511 -8.0247 7.4972 26 6 -1.3439 -7.9950 6.1544 27 6 0.7731 -4.5894 2.0463 28 6 1.2009 -4.7510 0.5934 29 1 0.3260 -4.9233 -0.0337 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 1.4408 -4.1233 -2.0208 33 1 3.0220 -3.3260 -1.9083 34 1 4.0474 -5.3510 -1.0564 35 1 3.1751 -5.7294 -2.5552 36 1 2.7973 -7.4570 -0.7821 37 1 1.2789 -6.6372 -1.2416 38 1 1.8263 -7.6988 2.0244 39 1 0.3809 -7.3296 1.0293 40 1 -0.2579 -8.3153 3.6726 41 1 1.4154 -8.1045 4.2419 42 1 1.7979 -7.6043 6.9344 43 1 0.1965 -7.8495 8.9941 44 1 -2.2089 -8.0965 5.5158 45 1 1.4917 -3.9700 2.5831 46 1 -0.2200 -4.1432 2.0984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992665549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:12 Heat of formation + Delta-G solvation = -11.501738 kcal Electronic energy + Delta-G solvation = -26814.522253 eV Core-core repulsion = 23091.677869 eV Total energy + Delta-G solvation = -3722.844384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.63454 -40.35121 -38.58138 -35.51001 -34.08875 -33.95418 -31.56281 -30.99556 -30.13493 -29.01310 -27.78429 -26.68924 -24.55819 -23.23612 -21.70995 -21.19027 -20.58931 -20.39532 -19.71720 -19.10282 -17.50106 -17.23735 -16.76176 -15.94826 -15.84613 -15.34251 -14.96034 -14.72861 -14.38451 -14.19869 -14.14566 -13.61094 -13.26489 -13.06305 -12.89434 -12.74483 -12.60033 -12.55258 -12.32643 -12.11878 -11.80718 -11.62393 -11.44487 -10.99294 -10.88377 -10.80538 -10.50647 -10.27005 -10.22033 -10.16107 -9.98419 -9.78716 -9.55930 -9.44829 -8.87538 -8.62378 -8.48210 -6.95859 -5.75246 -3.04370 1.68170 2.42088 2.77903 3.03767 3.17581 3.45190 3.49885 3.50716 4.39890 4.58906 4.59634 4.64470 4.65913 4.82270 4.88051 5.03496 5.21431 5.25047 5.32136 5.36678 5.38709 5.49068 5.55923 5.57189 5.62694 5.71396 5.82155 5.85874 5.88383 5.94016 6.04349 6.06372 6.08598 6.16711 6.28063 6.35011 6.41644 6.44287 6.53019 6.59633 6.63902 6.86607 7.00547 7.08249 7.65978 7.70688 8.32490 8.42851 9.54245 10.10696 10.45197 11.47130 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003176 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.952987 B = 8812.934128 C =10417.653320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.722 5.722 10 C 0.196 3.804 11 H 0.051 0.949 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.099 4.099 15 C -0.107 4.107 16 H 0.085 0.915 17 C 0.109 3.891 18 N -0.624 5.624 19 C 0.523 3.477 20 O -0.531 6.531 21 C -0.065 4.065 22 C -0.162 4.162 23 C -0.199 4.199 24 C -0.046 4.046 25 O -0.178 6.178 26 C -0.027 4.027 27 C 0.126 3.874 28 C -0.103 4.103 29 H 0.077 0.923 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.146 0.854 43 H 0.201 0.799 44 H 0.200 0.800 45 H 0.072 0.928 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -22.479 5.959 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.085 3.915 11 H 0.069 0.931 12 C -0.179 4.179 13 C -0.153 4.153 14 C -0.137 4.137 15 C -0.126 4.126 16 H 0.104 0.896 17 C -0.014 4.014 18 N -0.360 5.360 19 C 0.311 3.689 20 O -0.407 6.407 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.218 4.218 24 C -0.113 4.113 25 O -0.073 6.073 26 C -0.095 4.095 27 C 0.005 3.995 28 C -0.123 4.123 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.163 0.837 43 H 0.217 0.783 44 H 0.216 0.784 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.990 -21.879 6.663 22.957 hybrid contribution 0.404 1.095 -0.302 1.206 sum 2.395 -20.784 6.361 21.867 Atomic orbital electron populations 1.69646 1.05093 1.25774 1.57437 1.24727 0.95473 0.97642 1.02893 0.86302 0.78560 0.83717 0.77799 1.21334 1.21724 1.21268 1.19170 0.90901 0.84109 1.42994 0.91289 1.42393 1.05744 0.99670 1.88381 1.19943 0.93864 0.85116 0.92567 0.93113 1.22332 1.00300 0.94759 1.00520 1.21541 0.98977 0.95402 0.99380 1.21299 1.00755 0.98001 0.93685 1.22097 0.99060 0.95912 0.95540 0.89646 1.22115 0.97674 0.92240 0.89382 1.49282 1.65510 1.09485 1.11674 1.20194 0.77544 0.90859 0.80272 1.90745 1.46762 1.50945 1.52268 1.19965 1.03642 0.94403 0.92487 1.19816 0.93677 1.07888 0.95025 1.21671 1.00895 1.07465 0.91742 1.23935 0.80987 1.06571 0.99792 1.84054 1.30819 1.70674 1.21770 1.23773 0.98868 1.05858 0.81036 1.21581 1.02419 0.82173 0.93346 1.22169 0.98782 0.96356 0.94953 0.90432 0.93458 0.78219 0.92737 0.92027 0.92576 0.92722 0.92110 0.91608 0.90798 0.91160 0.88312 0.88191 0.83665 0.78256 0.78372 0.90950 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.57 9.95 -15.06 -0.15 -6.72 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.48 5.05 -53.76 -0.27 -17.75 16 10 C 0.20 3.64 2.52 -68.28 -0.17 3.47 16 11 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 12 C -0.14 -2.27 5.47 -26.53 -0.15 -2.42 16 13 C -0.11 -1.40 5.84 -26.55 -0.15 -1.56 16 14 C -0.10 -1.02 5.71 -27.01 -0.15 -1.17 16 15 C -0.11 -1.23 2.49 -89.89 -0.22 -1.46 16 16 H 0.09 1.04 8.04 -51.93 -0.42 0.62 16 17 C 0.11 1.10 6.34 -2.81 -0.02 1.08 16 18 N -0.62 -8.77 3.38 -170.86 -0.58 -9.35 16 19 C 0.52 7.81 7.86 -10.99 -0.09 7.73 16 20 O -0.53 -10.53 16.38 5.56 0.09 -10.43 16 21 C -0.07 -0.67 5.25 -29.04 -0.15 -0.82 16 22 C -0.16 -1.91 4.66 -104.74 -0.49 -2.40 16 23 C -0.20 -2.23 10.87 -39.70 -0.43 -2.66 16 24 C -0.05 -0.46 12.09 29.42 0.36 -0.11 16 25 O -0.18 -2.06 10.65 5.69 0.06 -2.00 16 26 C -0.03 -0.30 12.01 29.42 0.35 0.05 16 27 C 0.13 2.16 6.51 -3.43 -0.02 2.14 16 28 C -0.10 -1.58 1.81 -90.36 -0.16 -1.75 16 29 H 0.08 1.21 7.95 -51.93 -0.41 0.80 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 31 H 0.38 10.00 7.81 -40.82 -0.32 9.69 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.67 7.99 -51.93 -0.42 0.25 16 38 H 0.07 0.57 7.54 -51.93 -0.39 0.18 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 0.83 7.88 -51.93 -0.41 0.42 16 42 H 0.15 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 372.99 15.07 5.62 5.62 Total: -1.00 -34.11 372.99 -8.52 -42.63 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.40 Total: 8.23 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: -1.75 Total: -7.00 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.12 Total: -54.51 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.15 Total: -12.44 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.11 -8.52 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.126 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds