Wall clock time and date at job start Tue Mar 31 2020 12:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48500 * 109.47389 * 240.00149 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47102 * 119.99801 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 H 1.09001 * 109.93441 * 33.83819 * 10 9 7 12 12 C 1.53846 * 109.93904 * 272.58934 * 10 9 7 13 13 C 1.52529 * 111.65410 * 183.42271 * 12 10 9 14 14 C 1.53814 * 111.71015 * 54.04422 * 13 12 10 15 15 C 1.51619 * 107.02737 * 302.46209 * 14 13 12 16 16 H 1.08994 * 111.27381 * 304.35097 * 15 14 13 17 17 C 1.53062 * 116.66598 * 176.22844 * 15 14 13 18 18 N 1.48666 * 103.44665 * 204.13028 * 17 15 14 19 19 C 1.34777 * 125.78168 * 204.37581 * 18 17 15 20 20 O 1.21278 * 119.99370 * 180.02562 * 19 18 17 21 21 C 1.50692 * 120.00250 * 0.02562 * 19 18 17 22 22 C 1.50701 * 109.47264 * 179.97438 * 21 19 18 23 23 C 1.41380 * 126.57867 * 269.71699 * 22 21 19 24 24 C 1.34518 * 106.84166 * 179.83205 * 23 22 21 25 25 O 1.34306 * 108.41820 * 0.42297 * 24 23 22 26 26 C 1.34308 * 109.47577 * 359.72487 * 25 24 23 27 27 C 1.48242 * 108.42809 * 24.38223 * 18 17 15 28 28 C 1.51443 * 109.93958 * 154.99746 * 10 9 7 29 29 H 1.09005 * 109.86633 * 64.71217 * 28 10 9 30 30 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.04257 * 303.97916 * 12 10 9 33 33 H 1.08998 * 109.04471 * 62.86172 * 12 10 9 34 34 H 1.09003 * 109.02885 * 293.47299 * 13 12 10 35 35 H 1.08994 * 108.97338 * 174.58364 * 13 12 10 36 36 H 1.08999 * 109.94394 * 183.08473 * 14 13 12 37 37 H 1.08998 * 109.93919 * 61.83994 * 14 13 12 38 38 H 1.09006 * 110.62385 * 85.64767 * 17 15 14 39 39 H 1.09000 * 110.63034 * 322.62380 * 17 15 14 40 40 H 1.09003 * 109.46920 * 299.99569 * 21 19 18 41 41 H 1.09000 * 109.47607 * 59.99845 * 21 19 18 42 42 H 1.08006 * 126.57821 * 359.97438 * 23 22 21 43 43 H 1.07997 * 125.79311 * 180.18461 * 24 23 22 44 44 H 1.07995 * 125.78611 * 180.02562 * 26 25 24 45 45 H 1.09004 * 110.16602 * 244.08337 * 27 18 17 46 46 H 1.08998 * 110.23087 * 122.31957 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 1 2.9828 -3.5548 0.5593 12 6 2.3713 -4.0741 -1.4554 13 6 3.0608 -5.4335 -1.5124 14 6 2.2538 -6.5123 -0.7704 15 6 2.0803 -6.0333 0.6577 16 1 3.0425 -5.8174 1.1220 17 6 1.2242 -6.9082 1.5765 18 7 0.7510 -5.9574 2.6168 19 6 0.3669 -6.2840 3.8668 20 8 -0.0027 -5.4195 4.6328 21 6 0.3967 -7.7233 4.3124 22 6 -0.0766 -7.8170 5.7401 23 6 0.7270 -7.7407 6.9008 24 6 -0.0985 -7.8672 7.9553 25 8 -1.3511 -8.0247 7.4972 26 6 -1.3439 -7.9950 6.1544 27 6 0.7731 -4.5894 2.0463 28 6 1.2009 -4.7510 0.5934 29 1 0.3260 -4.9233 -0.0337 30 1 -0.4849 0.8401 0.0004 31 1 0.3554 -2.3880 -0.0016 32 1 1.4408 -4.1233 -2.0208 33 1 3.0220 -3.3260 -1.9083 34 1 4.0474 -5.3510 -1.0564 35 1 3.1751 -5.7294 -2.5552 36 1 2.7973 -7.4570 -0.7821 37 1 1.2789 -6.6372 -1.2416 38 1 1.8263 -7.6988 2.0244 39 1 0.3809 -7.3296 1.0293 40 1 -0.2579 -8.3153 3.6726 41 1 1.4154 -8.1045 4.2419 42 1 1.7979 -7.6043 6.9344 43 1 0.1965 -7.8495 8.9941 44 1 -2.2089 -8.0965 5.5158 45 1 1.4917 -3.9700 2.5831 46 1 -0.2200 -4.1432 2.0984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992665549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:11 Heat of formation + Delta-G solvation = -33.832734 kcal Electronic energy + Delta-G solvation = -26815.490597 eV Core-core repulsion = 23091.677869 eV Total energy + Delta-G solvation = -3723.812728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.43056 -41.51902 -39.80606 -36.91838 -35.57257 -34.94082 -33.29353 -32.10418 -31.05509 -30.50777 -28.80844 -27.85959 -26.04098 -24.90461 -22.49561 -22.25450 -21.72524 -21.44810 -21.01813 -20.14183 -19.16176 -18.33649 -17.94351 -17.06519 -16.79275 -16.71831 -16.36368 -15.75473 -15.59219 -15.48191 -15.43838 -15.01188 -14.72421 -14.22345 -14.01530 -13.75983 -13.66271 -13.56192 -13.45808 -13.32315 -13.13402 -12.81688 -12.78965 -12.55213 -12.42815 -12.25442 -12.02793 -11.88058 -11.68894 -11.48950 -11.26455 -11.07220 -10.86386 -10.82510 -10.52165 -9.68400 -9.41839 -8.99744 -7.94771 -5.22496 0.88292 1.43865 1.47001 1.52747 1.54937 1.65563 2.11304 2.33891 2.54701 3.33179 3.38280 3.63963 3.69968 3.81859 3.95508 3.98615 4.09643 4.17101 4.26828 4.28705 4.48406 4.50880 4.54247 4.56081 4.60996 4.65183 4.69367 4.71415 4.76219 4.82279 4.89321 4.95823 5.11102 5.13366 5.18903 5.30763 5.31531 5.35312 5.41045 5.44178 5.51593 5.54168 5.59734 5.71715 6.20922 6.27460 6.57537 7.18792 7.33219 8.10708 8.32395 9.28531 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013517 B = 0.003176 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.952987 B = 8812.934128 C =10417.653320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.189 3.811 11 H 0.039 0.961 12 C -0.128 4.128 13 C -0.110 4.110 14 C -0.091 4.091 15 C -0.092 4.092 16 H 0.082 0.918 17 C 0.109 3.891 18 N -0.622 5.622 19 C 0.517 3.483 20 O -0.593 6.593 21 C -0.051 4.051 22 C -0.184 4.184 23 C -0.223 4.223 24 C -0.048 4.048 25 O -0.192 6.192 26 C -0.040 4.040 27 C 0.132 3.868 28 C -0.099 4.099 29 H 0.078 0.922 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.044 0.956 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.233 0.767 44 H 0.221 0.779 45 H 0.036 0.964 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -26.106 5.309 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.081 3.919 11 H 0.057 0.943 12 C -0.169 4.169 13 C -0.148 4.148 14 C -0.128 4.128 15 C -0.112 4.112 16 H 0.101 0.899 17 C -0.011 4.011 18 N -0.356 5.356 19 C 0.307 3.693 20 O -0.474 6.474 21 C -0.090 4.090 22 C -0.186 4.186 23 C -0.242 4.242 24 C -0.114 4.114 25 O -0.088 6.088 26 C -0.108 4.108 27 C 0.009 3.991 28 C -0.119 4.119 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.202 0.798 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.134 0.866 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.173 0.827 43 H 0.249 0.751 44 H 0.237 0.763 45 H 0.054 0.946 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.627 -25.586 5.975 26.524 hybrid contribution -0.048 2.211 -0.059 2.212 sum 3.580 -23.376 5.917 24.377 Atomic orbital electron populations 1.69811 1.06581 1.25913 1.59790 1.25514 0.96305 1.00971 1.04092 0.85286 0.77251 0.79587 0.78119 1.20149 1.22328 1.20789 1.19556 0.91267 0.85396 1.40630 0.90888 1.42618 1.05312 1.01063 1.88534 1.20194 0.93431 0.83952 0.94344 0.94329 1.22139 0.99814 0.97204 0.97708 1.21502 0.98956 0.93089 1.01227 1.21297 1.01357 0.98593 0.91586 1.22127 0.98206 0.93519 0.97300 0.89930 1.22448 0.98767 0.91748 0.88160 1.49369 1.65085 1.08690 1.12422 1.21184 0.76019 0.92458 0.79630 1.90716 1.49516 1.53128 1.54030 1.20016 1.06124 0.90838 0.92061 1.20160 0.94131 1.08307 0.95988 1.21998 1.01719 1.08279 0.92219 1.24627 0.80325 1.05260 1.01221 1.84053 1.31637 1.70863 1.22222 1.24310 0.99717 1.05613 0.81142 1.21242 0.99325 0.84024 0.94543 1.21991 0.99230 0.97504 0.93156 0.90401 0.94202 0.79775 0.93704 0.94518 0.91967 0.90793 0.88145 0.90904 0.86589 0.88752 0.84870 0.85350 0.82724 0.75105 0.76260 0.94595 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.24 -13.36 9.95 84.03 0.84 -12.52 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -37.39 5.05 -324.01 -1.64 -39.02 16 10 C 0.19 7.21 2.52 44.77 0.11 7.32 16 11 H 0.04 1.55 7.99 -2.39 -0.02 1.53 16 12 C -0.13 -4.16 5.47 30.72 0.17 -3.99 16 13 C -0.11 -2.32 5.84 30.71 0.18 -2.14 16 14 C -0.09 -1.41 5.71 30.42 0.17 -1.24 16 15 C -0.09 -1.83 2.49 -10.32 -0.03 -1.85 16 16 H 0.08 1.74 8.04 -2.39 -0.02 1.72 16 17 C 0.11 1.73 6.34 85.98 0.55 2.28 16 18 N -0.62 -16.73 3.38 -812.88 -2.75 -19.48 16 19 C 0.52 14.98 7.86 87.65 0.69 15.67 16 20 O -0.59 -24.36 16.38 -3.02 -0.05 -24.41 16 21 C -0.05 -0.90 5.25 29.10 0.15 -0.74 16 22 C -0.18 -4.04 4.66 -19.94 -0.09 -4.13 16 23 C -0.22 -4.75 10.87 22.19 0.24 -4.51 16 24 C -0.05 -0.91 12.09 66.97 0.81 -0.10 16 25 O -0.19 -4.31 10.65 -2.56 -0.03 -4.34 16 26 C -0.04 -0.85 12.01 66.97 0.80 -0.05 16 27 C 0.13 4.73 6.51 85.82 0.56 5.29 16 28 C -0.10 -3.04 1.81 -10.62 -0.02 -3.06 16 29 H 0.08 2.41 7.95 -2.38 -0.02 2.39 16 30 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.37 20.50 7.81 -92.71 -0.72 19.78 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.11 7.99 -2.39 -0.02 1.09 16 38 H 0.12 1.00 7.54 -2.38 -0.02 0.98 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.13 1.54 7.88 -2.39 -0.02 1.52 16 42 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 43 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 44 H 0.22 3.25 8.06 -2.91 -0.02 3.23 16 45 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 46 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -81.15 372.99 3.69 -77.45 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.24 Total: 28.91 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.60 Total: -7.83 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -4.10 Total: -119.33 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.08 Total: -28.74 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -81.15 3.69 -77.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.622 kcal (2) G-P(sol) polarization free energy of solvation -81.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds