Wall clock time and date at job start Tue Mar 31 2020 12:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09001 * 109.01573 * 35.80529 * 10 9 7 12 12 C 1.52821 * 109.02399 * 276.96088 * 10 9 7 13 13 C 1.53793 * 107.51130 * 299.22900 * 12 10 9 14 14 C 1.52594 * 107.80157 * 294.70351 * 13 12 10 15 15 C 1.52996 * 111.05231 * 63.22454 * 14 13 12 16 16 H 1.08996 * 112.08246 * 73.33513 * 15 14 13 17 17 C 1.55354 * 106.97702 * 196.91806 * 15 14 13 18 18 N 1.47171 * 106.95878 * 91.81882 * 17 15 14 19 19 C 1.34784 * 125.64336 * 180.99616 * 18 17 15 20 20 O 1.21281 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99959 * 359.97438 * 19 18 17 22 22 C 1.50708 * 109.46759 * 179.97438 * 21 19 18 23 23 C 1.41378 * 126.57427 * 90.00341 * 22 21 19 24 24 C 1.34514 * 106.83746 * 179.97438 * 23 22 21 25 25 O 1.34300 * 108.42383 * 0.02562 * 24 23 22 26 26 C 1.34301 * 109.47375 * 359.77154 * 25 24 23 27 27 C 1.47810 * 108.70824 * 0.96105 * 18 17 15 28 28 C 1.50736 * 109.02441 * 154.72393 * 10 9 7 29 29 H 1.08998 * 109.26776 * 306.81000 * 28 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.73893 * 57.98352 * 12 10 9 33 33 H 1.09004 * 109.74205 * 178.68661 * 12 10 9 34 34 H 1.09003 * 109.25721 * 175.56967 * 13 12 10 35 35 H 1.09003 * 110.73169 * 54.67621 * 13 12 10 36 36 H 1.09004 * 109.15937 * 302.81828 * 14 13 12 37 37 H 1.08995 * 109.11852 * 183.60790 * 14 13 12 38 38 H 1.08995 * 109.95923 * 211.19280 * 17 15 14 39 39 H 1.08996 * 109.96231 * 332.43954 * 17 15 14 40 40 H 1.08998 * 109.47357 * 300.00088 * 21 19 18 41 41 H 1.09004 * 109.46919 * 60.00235 * 21 19 18 42 42 H 1.08001 * 126.58126 * 0.02562 * 23 22 21 43 43 H 1.08001 * 125.78857 * 180.02562 * 24 23 22 44 44 H 1.08004 * 125.79423 * 180.24037 * 26 25 24 45 45 H 1.08995 * 110.51505 * 264.70235 * 27 18 17 46 46 H 1.09001 * 110.51175 * 141.99204 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9565 -3.5449 0.6140 12 6 2.4652 -4.0045 -1.4241 13 6 1.1760 -4.1455 -2.2507 14 6 0.4043 -5.3459 -1.7104 15 6 -0.0213 -5.1174 -0.2587 16 1 -0.8381 -4.4001 -0.1792 17 6 -0.3953 -6.5063 0.3284 18 7 0.8226 -7.0523 0.9485 19 6 0.9253 -8.2516 1.5549 20 8 1.9838 -8.6006 2.0331 21 6 -0.2751 -9.1589 1.6387 22 6 0.1035 -10.4276 2.3586 23 6 0.0251 -10.6618 3.7507 24 6 0.4586 -11.9179 3.9595 25 8 0.7941 -12.4536 2.7745 26 6 0.5764 -11.5560 1.7996 27 6 1.9146 -6.0680 0.7956 28 6 1.1849 -4.7250 0.6145 29 1 0.8286 -4.3880 1.5879 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0729 -3.2006 -1.8395 33 1 3.0317 -4.9357 -1.4298 34 1 1.4357 -4.3161 -3.2955 35 1 0.5637 -3.2476 -2.1668 36 1 1.0379 -6.2314 -1.7624 37 1 -0.4832 -5.5048 -2.3228 38 1 -1.1773 -6.3945 1.0793 39 1 -0.7358 -7.1676 -0.4684 40 1 -1.0735 -8.6556 2.1840 41 1 -0.6185 -9.4009 0.6329 42 1 -0.3179 -9.9660 4.5021 43 1 0.5256 -12.4119 4.9176 44 1 0.7529 -11.7127 0.7457 45 1 2.5156 -6.2978 -0.0842 46 1 2.5376 -6.0466 1.6898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992665550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:14 Heat of formation + Delta-G solvation = -11.117847 kcal Electronic energy + Delta-G solvation = -26974.868624 eV Core-core repulsion = 23252.040887 eV Total energy + Delta-G solvation = -3722.827737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.70024 -40.52475 -38.64327 -35.58616 -34.13709 -33.39792 -31.53314 -31.02160 -30.20516 -29.37391 -27.89680 -26.42453 -24.55450 -22.96401 -21.92365 -21.76315 -21.06921 -20.79432 -19.19564 -18.10089 -17.49683 -17.25047 -16.97132 -16.10284 -15.99036 -15.35472 -15.00902 -14.75278 -14.55076 -14.01409 -13.90755 -13.65364 -13.50790 -13.10429 -12.95156 -12.84677 -12.69585 -12.56454 -12.43441 -11.73609 -11.67839 -11.59983 -11.34223 -11.15217 -10.96293 -10.85808 -10.71133 -10.23760 -10.14510 -10.05831 -9.75240 -9.67066 -9.56532 -9.48914 -8.86217 -8.69020 -8.55310 -6.96432 -5.78485 -3.06241 1.61753 2.36190 2.65551 2.97351 3.13347 3.42384 3.48440 3.49279 4.48368 4.55459 4.58411 4.60147 4.63716 4.80937 4.93674 5.00774 5.19318 5.26508 5.29930 5.42662 5.44913 5.51936 5.55832 5.60642 5.76028 5.79633 5.83222 5.83752 5.90866 5.98024 5.98475 6.06305 6.13207 6.22050 6.30003 6.37625 6.39690 6.43848 6.50253 6.80355 6.85594 6.94311 7.02728 7.10019 7.56517 7.69920 8.19730 8.40507 9.52200 10.08904 10.44380 11.44225 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.002586 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.223559 B =10824.344738 C =11098.947642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.189 3.811 11 H 0.046 0.954 12 C -0.135 4.135 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.086 4.086 16 H 0.100 0.900 17 C 0.099 3.901 18 N -0.617 5.617 19 C 0.526 3.474 20 O -0.537 6.537 21 C -0.066 4.066 22 C -0.162 4.162 23 C -0.198 4.198 24 C -0.046 4.046 25 O -0.178 6.178 26 C -0.028 4.028 27 C 0.115 3.885 28 C -0.095 4.095 29 H 0.078 0.922 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.146 0.854 43 H 0.201 0.799 44 H 0.199 0.801 45 H 0.070 0.930 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -21.535 1.280 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.361 5.361 10 C 0.078 3.922 11 H 0.064 0.936 12 C -0.175 4.175 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.105 4.105 16 H 0.118 0.882 17 C -0.024 4.024 18 N -0.352 5.352 19 C 0.315 3.685 20 O -0.414 6.414 21 C -0.106 4.106 22 C -0.164 4.164 23 C -0.217 4.217 24 C -0.113 4.113 25 O -0.073 6.073 26 C -0.096 4.096 27 C -0.008 4.008 28 C -0.115 4.115 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.164 0.836 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.089 0.911 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.814 -21.948 1.566 22.183 hybrid contribution 0.000 1.305 0.025 1.305 sum -2.814 -20.644 1.591 20.895 Atomic orbital electron populations 1.69650 1.05040 1.25574 1.57973 1.24698 0.95484 0.97554 1.03179 0.86228 0.78692 0.84042 0.77466 1.21818 1.21878 1.20834 1.19230 0.90987 0.84079 1.42292 0.91250 1.42391 1.05666 0.99424 1.88603 1.19490 0.93731 0.85654 0.93299 0.93650 1.22277 0.96839 0.99617 0.98784 1.21480 0.97395 0.98560 0.97429 1.21520 0.99632 0.98813 0.94579 1.22179 0.98769 0.94335 0.95191 0.88176 1.22485 0.87128 0.95828 0.96947 1.48660 1.12927 1.16897 1.56669 1.20202 0.90098 0.80611 0.77629 1.90714 1.30133 1.73572 1.46990 1.19969 0.96834 0.92031 1.01783 1.19823 1.06850 0.95643 0.94037 1.21682 1.06755 0.97305 0.95986 1.23941 1.04095 0.94892 0.88358 1.84051 1.66734 1.41003 1.15547 1.23764 1.03795 0.88452 0.93624 1.22203 0.89838 0.86954 1.01772 1.21751 0.95813 0.93954 0.99977 0.90349 0.93592 0.78243 0.91940 0.93594 0.93573 0.90003 0.92729 0.92645 0.91549 0.91352 0.88002 0.88225 0.83623 0.78233 0.78393 0.91141 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.22 9.89 -15.06 -0.15 -6.37 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -16.67 4.13 -54.62 -0.23 -16.90 16 10 C 0.19 3.48 2.51 -69.16 -0.17 3.31 16 11 H 0.05 0.89 8.07 -51.93 -0.42 0.47 16 12 C -0.13 -2.27 5.48 -26.41 -0.14 -2.42 16 13 C -0.11 -1.75 5.85 -26.53 -0.16 -1.90 16 14 C -0.11 -1.39 4.64 -26.94 -0.12 -1.52 16 15 C -0.09 -1.14 3.24 -88.85 -0.29 -1.43 16 16 H 0.10 1.42 7.99 -51.93 -0.41 1.00 16 17 C 0.10 1.07 5.82 -2.43 -0.01 1.06 16 18 N -0.62 -7.99 3.34 -170.06 -0.57 -8.56 16 19 C 0.53 7.17 7.85 -10.98 -0.09 7.08 16 20 O -0.54 -9.50 16.31 5.56 0.09 -9.41 16 21 C -0.07 -0.65 5.41 -29.03 -0.16 -0.81 16 22 C -0.16 -1.78 4.66 -104.74 -0.49 -2.27 16 23 C -0.20 -2.09 10.87 -39.70 -0.43 -2.52 16 24 C -0.05 -0.43 12.09 29.42 0.36 -0.07 16 25 O -0.18 -1.92 10.65 5.72 0.06 -1.86 16 26 C -0.03 -0.29 12.01 29.42 0.35 0.06 16 27 C 0.11 1.65 5.87 -2.85 -0.02 1.64 16 28 C -0.10 -1.47 2.30 -90.76 -0.21 -1.68 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.38 9.38 7.30 -40.82 -0.30 9.09 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.68 6.80 -51.93 -0.35 0.33 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.55 7.35 -51.93 -0.38 1.16 16 36 H 0.05 0.68 7.21 -51.93 -0.37 0.31 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.61 7.76 -51.93 -0.40 0.21 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 46 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -32.42 366.36 -8.40 -40.82 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.16 Total: 8.16 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.82 Total: -8.30 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.07 Total: -51.90 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.15 Total: -11.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.42 -8.40 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.702 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds