Wall clock time and date at job start Tue Mar 31 2020 12:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09001 * 109.01573 * 35.80529 * 10 9 7 12 12 C 1.52821 * 109.02399 * 276.96088 * 10 9 7 13 13 C 1.53793 * 107.51130 * 299.22900 * 12 10 9 14 14 C 1.52594 * 107.80157 * 294.70351 * 13 12 10 15 15 C 1.52996 * 111.05231 * 63.22454 * 14 13 12 16 16 H 1.08996 * 112.08246 * 73.33513 * 15 14 13 17 17 C 1.55354 * 106.97702 * 196.91806 * 15 14 13 18 18 N 1.47171 * 106.95878 * 91.81882 * 17 15 14 19 19 C 1.34784 * 125.64336 * 180.99616 * 18 17 15 20 20 O 1.21281 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.50700 * 119.99959 * 359.97438 * 19 18 17 22 22 C 1.50708 * 109.46759 * 179.97438 * 21 19 18 23 23 C 1.41378 * 126.57427 * 90.00341 * 22 21 19 24 24 C 1.34514 * 106.83746 * 179.97438 * 23 22 21 25 25 O 1.34300 * 108.42383 * 0.02562 * 24 23 22 26 26 C 1.34301 * 109.47375 * 359.77154 * 25 24 23 27 27 C 1.47810 * 108.70824 * 0.96105 * 18 17 15 28 28 C 1.50736 * 109.02441 * 154.72393 * 10 9 7 29 29 H 1.08998 * 109.26776 * 306.81000 * 28 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.08998 * 109.73893 * 57.98352 * 12 10 9 33 33 H 1.09004 * 109.74205 * 178.68661 * 12 10 9 34 34 H 1.09003 * 109.25721 * 175.56967 * 13 12 10 35 35 H 1.09003 * 110.73169 * 54.67621 * 13 12 10 36 36 H 1.09004 * 109.15937 * 302.81828 * 14 13 12 37 37 H 1.08995 * 109.11852 * 183.60790 * 14 13 12 38 38 H 1.08995 * 109.95923 * 211.19280 * 17 15 14 39 39 H 1.08996 * 109.96231 * 332.43954 * 17 15 14 40 40 H 1.08998 * 109.47357 * 300.00088 * 21 19 18 41 41 H 1.09004 * 109.46919 * 60.00235 * 21 19 18 42 42 H 1.08001 * 126.58126 * 0.02562 * 23 22 21 43 43 H 1.08001 * 125.78857 * 180.02562 * 24 23 22 44 44 H 1.08004 * 125.79423 * 180.24037 * 26 25 24 45 45 H 1.08995 * 110.51505 * 264.70235 * 27 18 17 46 46 H 1.09001 * 110.51175 * 141.99204 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9565 -3.5449 0.6140 12 6 2.4652 -4.0045 -1.4241 13 6 1.1760 -4.1455 -2.2507 14 6 0.4043 -5.3459 -1.7104 15 6 -0.0213 -5.1174 -0.2587 16 1 -0.8381 -4.4001 -0.1792 17 6 -0.3953 -6.5063 0.3284 18 7 0.8226 -7.0523 0.9485 19 6 0.9253 -8.2516 1.5549 20 8 1.9838 -8.6006 2.0331 21 6 -0.2751 -9.1589 1.6387 22 6 0.1035 -10.4276 2.3586 23 6 0.0251 -10.6618 3.7507 24 6 0.4586 -11.9179 3.9595 25 8 0.7941 -12.4536 2.7745 26 6 0.5764 -11.5560 1.7996 27 6 1.9146 -6.0680 0.7956 28 6 1.1849 -4.7250 0.6145 29 1 0.8286 -4.3880 1.5879 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0729 -3.2006 -1.8395 33 1 3.0317 -4.9357 -1.4298 34 1 1.4357 -4.3161 -3.2955 35 1 0.5637 -3.2476 -2.1668 36 1 1.0379 -6.2314 -1.7624 37 1 -0.4832 -5.5048 -2.3228 38 1 -1.1773 -6.3945 1.0793 39 1 -0.7358 -7.1676 -0.4684 40 1 -1.0735 -8.6556 2.1840 41 1 -0.6185 -9.4009 0.6329 42 1 -0.3179 -9.9660 4.5021 43 1 0.5256 -12.4119 4.9176 44 1 0.7529 -11.7127 0.7457 45 1 2.5156 -6.2978 -0.0842 46 1 2.5376 -6.0466 1.6898 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992665550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:14 Heat of formation + Delta-G solvation = -30.736543 kcal Electronic energy + Delta-G solvation = -26975.719354 eV Core-core repulsion = 23252.040887 eV Total energy + Delta-G solvation = -3723.678468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.42302 -41.67143 -39.81670 -36.98248 -35.05223 -34.92000 -33.11377 -32.09790 -31.15640 -30.82171 -28.84307 -27.63988 -26.09671 -24.49884 -23.18247 -22.47944 -22.29995 -21.63021 -20.14017 -19.38434 -19.17993 -18.27475 -18.07940 -17.25955 -16.80897 -16.52753 -16.32321 -16.01827 -15.53249 -15.39651 -15.22800 -15.10688 -14.84151 -14.16729 -14.12748 -13.87321 -13.66938 -13.59989 -13.34634 -13.22261 -12.91761 -12.74826 -12.67355 -12.59879 -12.43761 -12.32213 -12.18788 -12.00516 -11.79611 -11.34530 -11.14811 -11.05401 -10.84006 -10.64727 -10.51360 -9.61528 -9.40691 -8.93799 -7.90925 -5.16597 0.89864 1.47961 1.48099 1.56086 1.57095 1.65203 2.14483 2.35199 2.57925 3.41804 3.45144 3.52288 3.77603 3.81735 3.96169 3.97343 4.13915 4.17065 4.27315 4.31809 4.39805 4.45304 4.55146 4.56928 4.61140 4.65831 4.69789 4.80676 4.83987 4.84912 4.88905 4.93324 5.09836 5.12497 5.18575 5.23621 5.32154 5.33202 5.42860 5.49880 5.54951 5.60044 5.65386 5.75342 6.22109 6.32191 6.56676 7.17610 7.39415 8.15765 8.40678 9.32299 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.028384 B = 0.002586 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.223559 B =10824.344738 C =11098.947642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.963 3.037 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.186 3.814 11 H 0.028 0.972 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.099 4.099 15 C -0.086 4.086 16 H 0.089 0.911 17 C 0.105 3.895 18 N -0.615 5.615 19 C 0.524 3.476 20 O -0.585 6.585 21 C -0.057 4.057 22 C -0.184 4.184 23 C -0.225 4.225 24 C -0.046 4.046 25 O -0.191 6.191 26 C -0.037 4.037 27 C 0.122 3.878 28 C -0.088 4.088 29 H 0.057 0.943 30 H 0.249 0.751 31 H 0.376 0.624 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.132 0.868 42 H 0.152 0.848 43 H 0.232 0.768 44 H 0.224 0.776 45 H 0.076 0.924 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -23.621 0.473 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.793 3.207 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.200 1.200 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.367 5.367 10 C 0.077 3.923 11 H 0.046 0.954 12 C -0.168 4.168 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.105 4.105 16 H 0.108 0.892 17 C -0.017 4.017 18 N -0.349 5.349 19 C 0.314 3.686 20 O -0.466 6.466 21 C -0.096 4.096 22 C -0.186 4.186 23 C -0.244 4.244 24 C -0.113 4.113 25 O -0.087 6.087 26 C -0.105 4.105 27 C -0.001 4.001 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.209 0.791 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.248 0.752 44 H 0.240 0.760 45 H 0.095 0.905 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.502 -24.060 0.746 24.324 hybrid contribution 0.290 1.920 0.310 1.967 sum -3.211 -22.139 1.057 22.396 Atomic orbital electron populations 1.69784 1.06229 1.25725 1.59951 1.25381 0.96286 1.00453 1.04335 0.85286 0.77705 0.80409 0.77260 1.21662 1.22405 1.20002 1.19535 0.91163 0.85407 1.40245 0.91341 1.42496 1.05398 1.00257 1.88515 1.19644 0.93269 0.84914 0.94437 0.95410 1.22165 0.97554 0.99858 0.97208 1.21405 0.96402 0.98500 0.98319 1.21472 1.00424 0.97583 0.94182 1.22144 0.97167 0.95781 0.95378 0.89225 1.22587 0.86352 0.94469 0.98278 1.48703 1.13070 1.16512 1.56593 1.20915 0.90602 0.80654 0.76402 1.90695 1.32287 1.74594 1.48994 1.20014 0.95119 0.90683 1.03788 1.20130 1.07577 0.96423 0.94454 1.21983 1.07794 0.98182 0.96414 1.24597 1.02808 0.94829 0.89049 1.84054 1.66912 1.41548 1.16169 1.24316 1.03229 0.88256 0.94658 1.21974 0.90182 0.86771 1.01172 1.21507 0.96547 0.93530 0.99240 0.92427 0.94200 0.79143 0.94431 0.91038 0.92062 0.93613 0.91290 0.90255 0.89843 0.87857 0.86261 0.85021 0.83049 0.75151 0.76000 0.90546 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.47 13.06 21.65 0.28 -57.18 16 2 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 3 Si 0.96 45.93 29.55 68.60 2.03 47.96 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 7 C -0.23 -12.53 9.89 84.03 0.83 -11.70 16 8 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 9 N -0.73 -34.57 4.13 -326.73 -1.35 -35.92 16 10 C 0.19 6.98 2.51 44.20 0.11 7.09 16 11 H 0.03 1.13 8.07 -2.39 -0.02 1.11 16 12 C -0.13 -4.25 5.48 30.80 0.17 -4.08 16 13 C -0.11 -3.28 5.85 30.73 0.18 -3.10 16 14 C -0.10 -2.26 4.64 30.46 0.14 -2.12 16 15 C -0.09 -2.10 3.24 -9.65 -0.03 -2.13 16 16 H 0.09 2.43 7.99 -2.39 -0.02 2.42 16 17 C 0.10 1.88 5.82 87.06 0.51 2.38 16 18 N -0.62 -14.43 3.34 -810.34 -2.71 -17.14 16 19 C 0.52 13.15 7.85 87.66 0.69 13.84 16 20 O -0.59 -20.29 16.31 -3.03 -0.05 -20.34 16 21 C -0.06 -0.93 5.41 29.10 0.16 -0.77 16 22 C -0.18 -3.69 4.66 -19.94 -0.09 -3.79 16 23 C -0.22 -4.46 10.87 22.19 0.24 -4.22 16 24 C -0.05 -0.80 12.09 66.97 0.81 0.01 16 25 O -0.19 -3.84 10.65 -2.44 -0.03 -3.87 16 26 C -0.04 -0.69 12.01 66.97 0.80 0.11 16 27 C 0.12 3.40 5.87 86.44 0.51 3.91 16 28 C -0.09 -2.70 2.30 -10.89 -0.03 -2.73 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.38 18.96 7.30 -92.71 -0.68 18.29 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 2.01 6.80 -2.39 -0.02 2.00 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.73 7.35 -2.39 -0.02 1.71 16 36 H 0.07 1.42 7.21 -2.38 -0.02 1.41 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.24 7.76 -2.39 -0.02 1.22 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.22 2.62 8.06 -2.91 -0.02 2.60 16 45 H 0.08 2.04 6.17 -2.39 -0.01 2.03 16 46 H 0.06 1.78 8.07 -2.39 -0.02 1.76 16 Total: -1.00 -72.60 366.36 3.95 -68.65 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.30 Total: 28.72 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.46 Total: -10.87 kcal Atomic # 7 Polarization: -106.47 SS G_CDS: -3.77 Total: -110.25 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.08 Total: -24.21 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -72.60 3.95 -68.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992665550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.914 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds