Wall clock time and date at job start Tue Mar 31 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99836 * 3 2 1 5 5 H 1.48500 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47219 * 119.99748 * 3 2 1 7 7 C 1.38809 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00272 * 179.97438 * 9 7 2 11 11 H 1.09004 * 108.17589 * 37.86723 * 10 9 7 12 12 C 1.51483 * 108.27985 * 280.90100 * 10 9 7 13 13 C 1.52672 * 110.82353 * 191.67234 * 12 10 9 14 14 C 1.53259 * 109.24534 * 59.76889 * 13 12 10 15 15 C 1.52908 * 109.46573 * 295.97965 * 14 13 12 16 16 H 1.09011 * 111.17561 * 288.67133 * 15 14 13 17 17 C 1.54796 * 107.41591 * 166.64569 * 15 14 13 18 18 N 1.46943 * 107.27929 * 262.34120 * 17 15 14 19 19 C 1.34777 * 125.40217 * 178.42635 * 18 17 15 20 20 O 1.21286 * 119.99451 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00242 * 0.02562 * 19 18 17 22 22 C 1.50704 * 109.47031 * 180.02562 * 21 19 18 23 23 C 1.34515 * 125.79063 * 89.99964 * 22 21 19 24 24 C 1.41385 * 106.83992 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.83926 * 0.23220 * 24 23 22 26 26 O 1.34305 * 108.42433 * 359.63135 * 25 24 23 27 27 C 1.47232 * 109.18776 * 358.68251 * 18 17 15 28 28 C 1.49581 * 108.27917 * 154.99554 * 10 9 7 29 29 H 1.09004 * 107.99615 * 281.13998 * 28 10 9 30 30 H 0.97005 * 120.00180 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99682 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.21030 * 312.01835 * 12 10 9 33 33 H 1.09007 * 109.20726 * 71.37395 * 12 10 9 34 34 H 1.08995 * 109.62277 * 179.76757 * 13 12 10 35 35 H 1.09000 * 109.61927 * 300.13489 * 13 12 10 36 36 H 1.09006 * 110.18434 * 175.58690 * 14 13 12 37 37 H 1.09000 * 108.90670 * 55.58428 * 14 13 12 38 38 H 1.09003 * 109.88563 * 142.91807 * 17 15 14 39 39 H 1.09005 * 110.00642 * 21.82809 * 17 15 14 40 40 H 1.08996 * 109.47156 * 60.00770 * 21 19 18 41 41 H 1.09000 * 109.47078 * 300.00660 * 21 19 18 42 42 H 1.08002 * 126.57938 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.57514 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.78467 * 179.77218 * 25 24 23 45 45 H 1.08997 * 110.24160 * 100.20656 * 27 18 17 46 46 H 1.09004 * 110.24068 * 222.19550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9361 -3.5424 0.6363 12 6 2.5312 -3.9322 -1.4119 13 6 3.0468 -5.3633 -1.5421 14 6 1.9194 -6.3404 -1.1915 15 6 1.5254 -6.1589 0.2747 16 1 2.3003 -6.5388 0.9407 17 6 0.1846 -6.9021 0.4896 18 7 -0.8881 -5.9018 0.3998 19 6 -2.2069 -6.1598 0.5029 20 8 -3.0105 -5.2558 0.4130 21 6 -2.6831 -7.5715 0.7299 22 6 -4.1881 -7.5877 0.8069 23 6 -5.0272 -7.7516 -0.2316 24 6 -6.3401 -7.7000 0.2905 25 6 -6.2248 -7.5025 1.6160 26 8 -4.9190 -7.4403 1.9239 27 6 -0.2938 -4.5739 0.1733 28 6 1.1778 -4.7067 0.6009 29 1 1.2076 -4.5918 1.6845 30 1 -0.4851 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.7012 -3.7859 -2.1031 33 1 3.3335 -3.2384 -1.6631 34 1 3.3778 -5.5414 -2.5652 35 1 3.8800 -5.5160 -0.8561 36 1 2.2472 -7.3672 -1.3546 37 1 1.0591 -6.1298 -1.8269 38 1 0.1736 -7.3700 1.4740 39 1 0.0503 -7.6598 -0.2824 40 1 -2.2672 -7.9495 1.6638 41 1 -2.3549 -8.2028 -0.0959 42 1 -4.7510 -7.8942 -1.2660 43 1 -7.2592 -7.7961 -0.2685 44 1 -7.0434 -7.4119 2.3146 45 1 -0.3600 -4.3061 -0.8812 46 1 -0.7975 -3.8259 0.7855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992850322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:30 Heat of formation + Delta-G solvation = -9.043268 kcal Electronic energy + Delta-G solvation = -27161.784204 eV Core-core repulsion = 23439.046428 eV Total energy + Delta-G solvation = -3722.737777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.60426 -40.49075 -38.56428 -35.53655 -33.96081 -33.23465 -32.31554 -31.60996 -30.64146 -28.88558 -27.37955 -26.59568 -24.33777 -23.51400 -21.81082 -21.68703 -20.94127 -20.75933 -19.31331 -18.33251 -17.41261 -17.36485 -16.81024 -16.12067 -15.83813 -15.35796 -14.97101 -14.71104 -14.46476 -13.97535 -13.76646 -13.57602 -13.47353 -13.07413 -12.87667 -12.77590 -12.74656 -12.57735 -12.50967 -12.01283 -11.87259 -11.79157 -11.27968 -11.01122 -10.96116 -10.82177 -10.75293 -10.27989 -10.17849 -9.95972 -9.91480 -9.77194 -9.66228 -9.52574 -8.84556 -8.51625 -8.46590 -6.94269 -5.72830 -3.03003 1.64104 2.53848 2.69215 2.86345 3.22139 3.45598 3.49902 3.51612 4.40571 4.49329 4.53246 4.62793 4.76118 4.88918 4.90502 4.96146 5.11063 5.15854 5.24310 5.33520 5.40374 5.42749 5.58641 5.65331 5.73182 5.75367 5.76307 5.83265 5.84834 5.94228 6.01598 6.06107 6.12319 6.27263 6.31444 6.38598 6.43390 6.44469 6.52235 6.62259 6.74393 6.92688 7.07491 7.16603 7.61513 7.71950 8.25554 8.44809 9.55707 10.12057 10.45985 11.49308 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.003391 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.960327 B = 8254.147675 C = 9853.028069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.192 3.808 11 H 0.043 0.957 12 C -0.130 4.130 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.087 4.087 16 H 0.091 0.909 17 C 0.100 3.900 18 N -0.615 5.615 19 C 0.523 3.477 20 O -0.523 6.523 21 C -0.056 4.056 22 C 0.007 3.993 23 C -0.197 4.197 24 C -0.214 4.214 25 C -0.039 4.039 26 O -0.172 6.172 27 C 0.118 3.882 28 C -0.088 4.088 29 H 0.070 0.930 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.202 0.798 45 H 0.071 0.929 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -22.224 0.614 22.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.372 5.372 10 C 0.082 3.918 11 H 0.061 0.939 12 C -0.170 4.170 13 C -0.155 4.155 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.110 0.890 17 C -0.024 4.024 18 N -0.350 5.350 19 C 0.310 3.690 20 O -0.399 6.399 21 C -0.096 4.096 22 C -0.043 4.043 23 C -0.216 4.216 24 C -0.233 4.233 25 C -0.107 4.107 26 O -0.068 6.068 27 C -0.004 4.004 28 C -0.108 4.108 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.089 0.911 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.333 -21.524 0.891 21.799 hybrid contribution -0.017 1.002 -0.218 1.026 sum -3.350 -20.522 0.673 20.804 Atomic orbital electron populations 1.69654 1.05065 1.25828 1.57286 1.24744 0.95461 0.97643 1.02945 0.86301 0.78519 0.83769 0.77762 1.21329 1.21736 1.21326 1.19166 0.90909 0.84127 1.43094 0.91257 1.42685 1.05887 0.99654 1.89022 1.19008 0.93553 0.85607 0.93666 0.93938 1.21868 1.00925 0.94183 1.00010 1.21498 0.97504 0.96036 1.00459 1.21639 0.99346 0.98802 0.95018 1.21849 0.95422 0.95345 0.97970 0.89035 1.22346 0.87284 0.91607 1.01131 1.48433 1.04691 1.10217 1.71677 1.19962 0.81007 0.90468 0.77552 1.90797 1.52834 1.46894 1.49332 1.20070 0.87560 0.96191 1.05750 1.21506 0.92913 1.05454 0.84460 1.21516 0.92464 1.08097 0.99555 1.21791 0.98446 1.08374 0.94695 1.23981 0.83415 1.06026 0.97280 1.83987 1.17643 1.70361 1.34815 1.22018 0.92697 0.83639 1.02000 1.21150 0.94328 0.93835 1.01439 0.91111 0.93396 0.77938 0.92390 0.92099 0.92680 0.92410 0.92140 0.91939 0.91624 0.91210 0.87259 0.86125 0.83619 0.83507 0.78167 0.91057 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.63 9.79 -15.06 -0.15 -6.78 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.88 4.97 -55.84 -0.28 -18.15 16 10 C 0.19 3.59 2.57 -70.39 -0.18 3.41 16 11 H 0.04 0.82 8.06 -51.93 -0.42 0.41 16 12 C -0.13 -2.20 5.33 -27.67 -0.15 -2.35 16 13 C -0.12 -1.46 5.92 -26.77 -0.16 -1.62 16 14 C -0.11 -1.21 4.87 -26.64 -0.13 -1.34 16 15 C -0.09 -0.97 3.28 -89.80 -0.29 -1.26 16 16 H 0.09 0.87 8.14 -51.92 -0.42 0.44 16 17 C 0.10 1.00 5.93 -2.85 -0.02 0.98 16 18 N -0.62 -8.79 3.33 -171.12 -0.57 -9.36 16 19 C 0.52 8.08 7.83 -10.99 -0.09 7.99 16 20 O -0.52 -10.83 16.33 5.55 0.09 -10.74 16 21 C -0.06 -0.60 5.41 -29.03 -0.16 -0.76 16 22 C 0.01 0.09 5.81 -35.62 -0.21 -0.11 16 23 C -0.20 -2.44 10.81 -39.70 -0.43 -2.87 16 24 C -0.21 -2.41 10.91 -39.70 -0.43 -2.84 16 25 C -0.04 -0.43 12.09 29.42 0.36 -0.08 16 26 O -0.17 -2.35 10.65 5.70 0.06 -2.29 16 27 C 0.12 2.07 4.75 -3.21 -0.02 2.06 16 28 C -0.09 -1.37 2.43 -91.96 -0.22 -1.59 16 29 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.39 10.15 5.67 -40.82 -0.23 9.92 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.76 7.99 -51.93 -0.41 0.35 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.55 7.70 -51.93 -0.40 0.15 16 40 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 43 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 44 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 46 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -34.90 369.18 -9.11 -44.01 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.32 Total: 8.88 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.37 Total: -7.59 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.12 Total: -55.34 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.15 Total: -13.03 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.90 -9.11 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992850322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.969 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds