Wall clock time and date at job start Tue Mar 31 2020 12:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00068 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99836 * 3 2 1 5 5 H 1.48500 * 109.47225 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47219 * 119.99748 * 3 2 1 7 7 C 1.38809 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00393 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00272 * 179.97438 * 9 7 2 11 11 H 1.09004 * 108.17589 * 37.86723 * 10 9 7 12 12 C 1.51483 * 108.27985 * 280.90100 * 10 9 7 13 13 C 1.52672 * 110.82353 * 191.67234 * 12 10 9 14 14 C 1.53259 * 109.24534 * 59.76889 * 13 12 10 15 15 C 1.52908 * 109.46573 * 295.97965 * 14 13 12 16 16 H 1.09011 * 111.17561 * 288.67133 * 15 14 13 17 17 C 1.54796 * 107.41591 * 166.64569 * 15 14 13 18 18 N 1.46943 * 107.27929 * 262.34120 * 17 15 14 19 19 C 1.34777 * 125.40217 * 178.42635 * 18 17 15 20 20 O 1.21286 * 119.99451 * 180.02562 * 19 18 17 21 21 C 1.50699 * 120.00242 * 0.02562 * 19 18 17 22 22 C 1.50704 * 109.47031 * 180.02562 * 21 19 18 23 23 C 1.34515 * 125.79063 * 89.99964 * 22 21 19 24 24 C 1.41385 * 106.83992 * 180.02562 * 23 22 21 25 25 C 1.34512 * 106.83926 * 0.23220 * 24 23 22 26 26 O 1.34305 * 108.42433 * 359.63135 * 25 24 23 27 27 C 1.47232 * 109.18776 * 358.68251 * 18 17 15 28 28 C 1.49581 * 108.27917 * 154.99554 * 10 9 7 29 29 H 1.09004 * 107.99615 * 281.13998 * 28 10 9 30 30 H 0.97005 * 120.00180 * 0.02562 * 1 2 3 31 31 H 0.97007 * 119.99682 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.21030 * 312.01835 * 12 10 9 33 33 H 1.09007 * 109.20726 * 71.37395 * 12 10 9 34 34 H 1.08995 * 109.62277 * 179.76757 * 13 12 10 35 35 H 1.09000 * 109.61927 * 300.13489 * 13 12 10 36 36 H 1.09006 * 110.18434 * 175.58690 * 14 13 12 37 37 H 1.09000 * 108.90670 * 55.58428 * 14 13 12 38 38 H 1.09003 * 109.88563 * 142.91807 * 17 15 14 39 39 H 1.09005 * 110.00642 * 21.82809 * 17 15 14 40 40 H 1.08996 * 109.47156 * 60.00770 * 21 19 18 41 41 H 1.09000 * 109.47078 * 300.00660 * 21 19 18 42 42 H 1.08002 * 126.57938 * 359.97438 * 23 22 21 43 43 H 1.08002 * 126.57514 * 179.97438 * 24 23 22 44 44 H 1.07998 * 125.78467 * 179.77218 * 25 24 23 45 45 H 1.08997 * 110.24160 * 100.20656 * 27 18 17 46 46 H 1.09004 * 110.24068 * 222.19550 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9361 -3.5424 0.6363 12 6 2.5312 -3.9322 -1.4119 13 6 3.0468 -5.3633 -1.5421 14 6 1.9194 -6.3404 -1.1915 15 6 1.5254 -6.1589 0.2747 16 1 2.3003 -6.5388 0.9407 17 6 0.1846 -6.9021 0.4896 18 7 -0.8881 -5.9018 0.3998 19 6 -2.2069 -6.1598 0.5029 20 8 -3.0105 -5.2558 0.4130 21 6 -2.6831 -7.5715 0.7299 22 6 -4.1881 -7.5877 0.8069 23 6 -5.0272 -7.7516 -0.2316 24 6 -6.3401 -7.7000 0.2905 25 6 -6.2248 -7.5025 1.6160 26 8 -4.9190 -7.4403 1.9239 27 6 -0.2938 -4.5739 0.1733 28 6 1.1778 -4.7067 0.6009 29 1 1.2076 -4.5918 1.6845 30 1 -0.4851 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.7012 -3.7859 -2.1031 33 1 3.3335 -3.2384 -1.6631 34 1 3.3778 -5.5414 -2.5652 35 1 3.8800 -5.5160 -0.8561 36 1 2.2472 -7.3672 -1.3546 37 1 1.0591 -6.1298 -1.8269 38 1 0.1736 -7.3700 1.4740 39 1 0.0503 -7.6598 -0.2824 40 1 -2.2672 -7.9495 1.6638 41 1 -2.3549 -8.2028 -0.0959 42 1 -4.7510 -7.8942 -1.2660 43 1 -7.2592 -7.7961 -0.2685 44 1 -7.0434 -7.4119 2.3146 45 1 -0.3600 -4.3061 -0.8812 46 1 -0.7975 -3.8259 0.7855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992850322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:30 Heat of formation + Delta-G solvation = -32.366913 kcal Electronic energy + Delta-G solvation = -27162.795594 eV Core-core repulsion = 23439.046428 eV Total energy + Delta-G solvation = -3723.749166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.48762 -41.67972 -39.84088 -37.00690 -35.48513 -34.15970 -33.47757 -33.18874 -31.76761 -30.48321 -28.52894 -27.69337 -25.87896 -25.12936 -22.84510 -22.69302 -22.19260 -21.72255 -20.44319 -19.65871 -19.09194 -18.28770 -18.10138 -17.36148 -16.90763 -16.70737 -16.43196 -15.99429 -15.54400 -15.46407 -15.04245 -14.93213 -14.74791 -14.35611 -14.03492 -13.76470 -13.74794 -13.68518 -13.55664 -13.43997 -13.12640 -12.81208 -12.77422 -12.69115 -12.42308 -12.29461 -12.12544 -11.96514 -11.87563 -11.28010 -11.19890 -11.06030 -10.98271 -10.82861 -10.70856 -9.67111 -9.39824 -9.00911 -7.94286 -5.23707 0.73419 1.43773 1.47410 1.53616 1.54662 1.64254 1.96865 2.23034 2.54631 3.37870 3.38451 3.51103 3.61037 3.76664 3.84250 4.13190 4.13999 4.15965 4.20937 4.31086 4.31638 4.36057 4.40884 4.44334 4.53263 4.66491 4.69579 4.83085 4.83957 4.91274 4.92284 4.97115 5.00558 5.11895 5.18978 5.22375 5.25910 5.32797 5.39061 5.46885 5.52801 5.61321 5.61721 5.74988 6.19660 6.27289 6.50783 7.09421 7.32353 8.10300 8.30855 9.29144 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013913 B = 0.003391 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.960327 B = 8254.147675 C = 9853.028069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.081 4.081 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.276 1.276 7 C -0.236 4.236 8 H 0.079 0.921 9 N -0.747 5.747 10 C 0.188 3.812 11 H 0.041 0.959 12 C -0.122 4.122 13 C -0.109 4.109 14 C -0.106 4.106 15 C -0.078 4.078 16 H 0.126 0.874 17 C 0.095 3.905 18 N -0.612 5.612 19 C 0.515 3.485 20 O -0.592 6.592 21 C -0.042 4.042 22 C -0.019 4.019 23 C -0.211 4.211 24 C -0.230 4.230 25 C -0.045 4.045 26 O -0.195 6.195 27 C 0.128 3.872 28 C -0.081 4.081 29 H 0.062 0.938 30 H 0.248 0.752 31 H 0.371 0.629 32 H 0.030 0.970 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.235 0.765 45 H 0.043 0.957 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -26.080 0.774 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.202 1.202 7 C -0.368 4.368 8 H 0.096 0.904 9 N -0.388 5.388 10 C 0.080 3.920 11 H 0.059 0.941 12 C -0.163 4.163 13 C -0.147 4.147 14 C -0.144 4.144 15 C -0.097 4.097 16 H 0.144 0.856 17 C -0.026 4.026 18 N -0.345 5.345 19 C 0.305 3.695 20 O -0.473 6.473 21 C -0.080 4.080 22 C -0.070 4.070 23 C -0.231 4.231 24 C -0.249 4.249 25 C -0.112 4.112 26 O -0.091 6.091 27 C 0.005 3.995 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.204 0.796 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.176 0.824 43 H 0.186 0.814 44 H 0.251 0.749 45 H 0.061 0.939 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.272 -25.465 1.048 25.519 hybrid contribution -0.633 2.186 -0.286 2.294 sum -1.905 -23.279 0.762 23.369 Atomic orbital electron populations 1.69855 1.06860 1.25929 1.59959 1.25597 0.96241 1.01285 1.04172 0.85216 0.77108 0.79212 0.78282 1.20264 1.22634 1.20180 1.19619 0.91456 0.85287 1.40409 0.90355 1.43000 1.05546 1.01255 1.88989 1.19285 0.93433 0.84323 0.94913 0.94136 1.21694 0.99280 0.97662 0.97620 1.21447 0.98604 0.92629 1.02033 1.21676 0.97969 1.00594 0.94130 1.21944 0.97290 0.91295 0.99132 0.85557 1.22745 0.84600 0.90795 1.04493 1.48517 1.05595 1.09676 1.70709 1.20964 0.80583 0.91974 0.76026 1.90764 1.54668 1.49388 1.52447 1.20182 0.86271 0.92805 1.08787 1.22000 0.94176 1.06228 0.84547 1.21893 0.93163 1.07812 1.00192 1.22183 0.99037 1.08475 0.95163 1.24759 0.83364 1.04848 0.98224 1.83973 1.18775 1.70806 1.35588 1.21583 0.94041 0.84781 0.99128 1.21014 0.92186 0.96527 1.00378 0.91929 0.94304 0.79620 0.95090 0.94044 0.91232 0.90556 0.87680 0.93674 0.88305 0.87405 0.84265 0.82077 0.82438 0.81405 0.74867 0.93852 0.95068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.26 13.06 21.65 0.28 -62.97 16 2 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 3 Si 0.97 47.75 29.55 68.60 2.03 49.78 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.24 -13.38 9.79 84.03 0.82 -12.56 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.75 -38.64 4.97 -330.58 -1.64 -40.29 16 10 C 0.19 7.19 2.57 43.40 0.11 7.30 16 11 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 12 C -0.12 -4.18 5.33 29.99 0.16 -4.02 16 13 C -0.11 -2.39 5.92 30.57 0.18 -2.21 16 14 C -0.11 -1.85 4.87 30.65 0.15 -1.70 16 15 C -0.08 -1.42 3.28 -10.26 -0.03 -1.46 16 16 H 0.13 1.59 8.14 -2.38 -0.02 1.57 16 17 C 0.09 1.46 5.93 86.91 0.52 1.98 16 18 N -0.61 -17.01 3.33 -813.67 -2.71 -19.71 16 19 C 0.51 15.83 7.83 87.66 0.69 16.52 16 20 O -0.59 -26.03 16.33 -3.05 -0.05 -26.08 16 21 C -0.04 -0.79 5.41 29.10 0.16 -0.63 16 22 C -0.02 -0.49 5.81 24.83 0.14 -0.34 16 23 C -0.21 -5.07 10.81 22.19 0.24 -4.83 16 24 C -0.23 -4.98 10.91 22.19 0.24 -4.73 16 25 C -0.05 -0.96 12.09 66.97 0.81 -0.15 16 26 O -0.19 -5.23 10.65 -2.52 -0.03 -5.26 16 27 C 0.13 4.78 4.75 86.52 0.41 5.19 16 28 C -0.08 -2.52 2.43 -11.66 -0.03 -2.55 16 29 H 0.06 2.03 8.13 -2.38 -0.02 2.01 16 30 H 0.25 15.75 8.31 -92.70 -0.77 14.98 16 31 H 0.37 21.20 5.67 -92.70 -0.53 20.67 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.04 0.97 7.99 -2.39 -0.02 0.95 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 0.98 7.70 -2.38 -0.02 0.96 16 40 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 43 H 0.17 2.71 8.06 -2.91 -0.02 2.68 16 44 H 0.24 2.88 8.06 -2.91 -0.02 2.85 16 45 H 0.04 1.82 8.06 -2.39 -0.02 1.80 16 46 H 0.03 1.46 7.53 -2.38 -0.02 1.44 16 Total: -1.00 -85.51 369.18 3.36 -82.15 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.44 Total: 30.95 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 5.03 Total: -8.57 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -4.07 Total: -122.98 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.08 Total: -31.34 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -85.51 3.36 -82.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992850322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.787 kcal (2) G-P(sol) polarization free energy of solvation -85.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds