Wall clock time and date at job start Tue Mar 31 2020 12:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00320 * 2 1 4 4 H 1.48504 * 109.46916 * 274.45566 * 3 2 1 5 5 H 1.48502 * 109.47060 * 34.45181 * 3 2 1 6 6 H 1.48500 * 109.47332 * 154.45260 * 3 2 1 7 7 C 1.38818 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00478 * 164.49611 * 7 2 1 9 9 N 1.36942 * 119.99440 * 344.49613 * 7 2 1 10 10 C 1.47005 * 121.38025 * 335.97755 * 9 7 2 11 11 C 1.50316 * 109.16560 * 222.97344 * 10 9 7 12 12 C 1.29454 * 123.65593 * 349.01725 * 11 10 9 13 13 C 1.50695 * 117.69544 * 180.88394 * 12 11 10 14 14 N 1.46503 * 109.47160 * 94.98311 * 13 12 11 15 15 C 1.34777 * 120.00120 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99967 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99887 * 179.97438 * 15 14 13 18 18 H 1.08992 * 110.66774 * 56.78225 * 17 15 14 19 19 C 1.55006 * 110.74703 * 293.36585 * 17 15 14 20 20 C 1.55826 * 102.78527 * 241.67856 * 19 17 15 21 21 H 1.08997 * 115.38554 * 158.11362 * 20 19 17 22 22 O 1.46528 * 101.24516 * 32.41949 * 20 19 17 23 23 C 1.46541 * 99.68308 * 305.84111 * 22 20 19 24 24 H 1.08999 * 115.67962 * 179.66191 * 23 22 20 25 25 C 1.55823 * 101.23993 * 305.84082 * 23 22 20 26 26 H 1.09002 * 118.19419 * 171.69024 * 25 23 22 27 27 C 1.52998 * 117.24389 * 330.28074 * 25 23 22 28 28 C 1.53005 * 60.86877 * 89.21406 * 27 25 23 29 29 H 1.08997 * 120.22490 * 114.58096 * 28 27 25 30 30 C 1.49971 * 124.60743 * 0.86338 * 12 11 10 31 31 C 1.47342 * 121.37253 * 156.00255 * 9 7 2 32 32 H 0.96994 * 120.00041 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.51855 * 342.88018 * 10 9 7 34 34 H 1.09002 * 109.52122 * 103.05967 * 10 9 7 35 35 H 1.08005 * 118.17276 * 169.00479 * 11 10 9 36 36 H 1.08999 * 109.47011 * 214.97944 * 13 12 11 37 37 H 1.08991 * 109.47711 * 334.97980 * 13 12 11 38 38 H 0.97004 * 120.00000 * 0.02562 * 14 13 12 39 39 H 1.08998 * 110.74759 * 359.97438 * 19 17 15 40 40 H 1.08991 * 110.74895 * 123.35741 * 19 17 15 41 41 H 1.09005 * 117.40780 * 341.47931 * 27 25 23 42 42 H 1.09000 * 117.34540 * 196.97957 * 27 25 23 43 43 H 1.08996 * 109.31490 * 220.71522 * 30 12 11 44 44 H 1.08998 * 109.31806 * 101.29045 * 30 12 11 45 45 H 1.08997 * 109.77943 * 237.78709 * 31 9 7 46 46 H 1.09001 * 109.77763 * 358.59278 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4036 2.1007 -1.3959 5 1 1.4980 2.6236 0.7921 6 1 3.5917 1.4147 0.6038 7 6 2.0103 -1.2022 0.0005 8 1 3.0608 -1.2194 -0.2494 9 7 1.3629 -2.3664 0.3181 10 6 0.1446 -2.3649 1.1408 11 6 0.2251 -3.4816 2.1438 12 6 1.1208 -4.4155 2.1073 13 6 1.0641 -5.4822 3.1703 14 7 0.3200 -6.6379 2.6633 15 6 0.1413 -7.7204 3.4460 16 8 0.5969 -7.7380 4.5699 17 6 -0.6247 -8.9089 2.9247 18 1 -0.1737 -9.2845 2.0063 19 6 -2.1151 -8.5465 2.7010 20 6 -2.8544 -9.5086 3.6787 21 1 -3.8570 -9.1972 3.9718 22 8 -1.8790 -9.6151 4.7670 23 6 -0.7008 -10.0322 4.0019 24 1 0.2090 -10.1858 4.5821 25 6 -1.2515 -11.2834 3.2541 26 1 -0.6275 -11.7403 2.4860 27 6 -2.3561 -12.0837 3.9471 28 6 -2.7419 -10.9210 3.0304 29 1 -3.2894 -11.1088 2.1068 30 6 2.2105 -4.5110 1.0813 31 6 1.8589 -3.6723 -0.1503 32 1 -0.4850 0.8400 -0.0004 33 1 0.0588 -1.4118 1.6628 34 1 -0.7265 -2.5109 0.5020 35 1 -0.5049 -3.5060 2.9394 36 1 2.0770 -5.7886 3.4318 37 1 0.5641 -5.0876 4.0547 38 1 -0.0434 -6.6242 1.7641 39 1 -2.3037 -7.5065 2.9671 40 1 -2.4096 -8.7425 1.6701 41 1 -2.4822 -11.9397 5.0202 42 1 -2.5460 -13.0936 3.5837 43 1 2.3360 -5.5522 0.7846 44 1 3.1434 -4.1467 1.5113 45 1 1.0845 -4.1747 -0.7299 46 1 2.7474 -3.5302 -0.7657 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000968483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:17 Heat of formation + Delta-G solvation = -10.598361 kcal Electronic energy + Delta-G solvation = -26637.558305 eV Core-core repulsion = 22914.753095 eV Total energy + Delta-G solvation = -3722.805210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60612 -40.48126 -39.27809 -36.42150 -35.27516 -34.60399 -33.35350 -32.39451 -31.42273 -30.42504 -28.62487 -26.27939 -24.96061 -24.35257 -23.68661 -22.75579 -21.46732 -21.28692 -20.76387 -19.50305 -18.54351 -17.82618 -17.60505 -17.26799 -16.93092 -16.68278 -16.16120 -15.80927 -15.37808 -15.34120 -15.23561 -15.01441 -14.56810 -14.21267 -13.98556 -13.70030 -13.58787 -13.36912 -13.27551 -12.98126 -12.82168 -12.77970 -12.59546 -12.44407 -12.27998 -12.23419 -12.11123 -12.09350 -11.71609 -11.29930 -11.26145 -11.02736 -10.79223 -10.68608 -10.61500 -10.11645 -9.65747 -8.75548 -7.89405 -5.30189 1.16386 1.45906 1.48104 1.57380 1.60085 2.29193 2.50554 2.65204 2.81487 3.28115 3.41417 3.54247 3.60978 3.61505 3.80907 3.84083 3.90073 3.95574 4.04266 4.17097 4.23312 4.38153 4.43226 4.52579 4.61110 4.64064 4.68212 4.73624 4.82766 4.83523 4.88059 4.91174 4.93717 4.98105 5.09840 5.14580 5.20917 5.32748 5.35635 5.41529 5.47363 5.55641 5.60999 5.75923 6.15145 6.33350 6.54704 7.12908 7.22290 7.83081 8.36474 9.19284 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.034158 B = 0.002352 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.514021 B =11899.558950 C =12084.904291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.616 5.616 10 C 0.206 3.794 11 C -0.142 4.142 12 C -0.137 4.137 13 C 0.167 3.833 14 N -0.710 5.710 15 C 0.518 3.482 16 O -0.584 6.584 17 C -0.127 4.127 18 H 0.141 0.859 19 C -0.128 4.128 20 C 0.077 3.923 21 H 0.142 0.858 22 O -0.400 6.400 23 C 0.106 3.894 24 H 0.119 0.881 25 C -0.194 4.194 26 H 0.146 0.854 27 C -0.138 4.138 28 C -0.185 4.185 29 H 0.149 0.851 30 C -0.084 4.084 31 C 0.139 3.861 32 H 0.250 0.750 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.413 0.587 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -24.656 2.631 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.795 3.205 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.081 3.919 11 C -0.163 4.163 12 C -0.138 4.138 13 C 0.044 3.956 14 N -0.361 5.361 15 C 0.306 3.694 16 O -0.463 6.463 17 C -0.148 4.148 18 H 0.159 0.841 19 C -0.165 4.165 20 C 0.020 3.980 21 H 0.159 0.841 22 O -0.320 6.320 23 C 0.048 3.952 24 H 0.137 0.863 25 C -0.212 4.212 26 H 0.163 0.837 27 C -0.175 4.175 28 C -0.203 4.203 29 H 0.167 0.833 30 C -0.122 4.122 31 C 0.014 3.986 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.142 0.858 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.836 -24.451 3.662 25.193 hybrid contribution 0.165 1.523 -0.363 1.574 sum -4.671 -22.928 3.299 23.631 Atomic orbital electron populations 1.70157 1.06471 1.25774 1.56180 1.25730 0.96174 1.01314 1.01723 0.85269 0.78088 0.79758 0.77401 1.21163 1.22014 1.19651 1.19509 0.92557 0.85645 1.40911 0.91209 1.44412 1.29420 1.02193 1.57943 1.19391 0.87781 0.94851 0.89921 1.22937 0.98171 0.96248 0.98923 1.20589 0.98267 0.96486 0.98423 1.20197 0.96466 0.84569 0.94401 1.46015 1.56097 1.15459 1.18558 1.20942 0.79242 0.84397 0.84807 1.90690 1.51870 1.82574 1.21210 1.22970 0.97299 0.92905 1.01662 0.84142 1.23187 0.91044 0.99911 1.02407 1.24528 0.94428 0.93806 0.85285 0.84072 1.90142 1.22031 1.89012 1.30791 1.24030 0.90159 0.91131 0.89872 0.86328 1.24303 0.92282 0.99907 1.04690 0.83672 1.22889 0.99573 0.96283 0.98770 1.24356 0.98785 0.93911 1.03253 0.83317 1.20695 0.96179 1.00439 0.94917 1.21146 0.97455 0.85696 0.94328 0.94119 0.92620 0.96651 0.87281 0.91454 0.92661 0.75046 0.91257 0.86245 0.90179 0.85793 0.89164 0.91990 0.95194 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.97 11.08 21.65 0.24 -54.73 16 2 C -0.05 -3.03 5.01 84.86 0.43 -2.61 16 3 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.26 -13.95 9.71 84.03 0.82 -13.13 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 9 N -0.62 -30.31 3.01 -703.38 -2.12 -32.43 16 10 C 0.21 9.78 5.23 85.42 0.45 10.23 16 11 C -0.14 -5.25 9.47 27.10 0.26 -4.99 16 12 C -0.14 -4.34 5.22 -15.14 -0.08 -4.42 16 13 C 0.17 4.67 5.66 85.63 0.48 5.16 16 14 N -0.71 -16.30 5.55 -466.80 -2.59 -18.89 16 15 C 0.52 13.00 6.98 87.66 0.61 13.61 16 16 O -0.58 -20.13 15.91 -3.03 -0.05 -20.18 16 17 C -0.13 -2.15 2.89 -9.88 -0.03 -2.18 16 18 H 0.14 1.50 8.03 -2.39 -0.02 1.48 16 19 C -0.13 -1.80 6.16 32.26 0.20 -1.61 16 20 C 0.08 1.21 5.66 32.54 0.18 1.39 16 21 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 22 O -0.40 -9.82 10.78 -148.98 -1.61 -11.43 16 23 C 0.11 2.10 4.55 32.54 0.15 2.24 16 24 H 0.12 2.71 7.78 -2.39 -0.02 2.69 16 25 C -0.19 -2.49 6.63 -9.13 -0.06 -2.55 16 26 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 27 C -0.14 -1.74 9.80 30.60 0.30 -1.44 16 28 C -0.19 -2.10 6.63 -9.13 -0.06 -2.16 16 29 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 30 C -0.08 -2.61 5.95 29.65 0.18 -2.43 16 31 C 0.14 5.36 6.58 86.25 0.57 5.93 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.06 3.03 6.41 -2.38 -0.02 3.02 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.11 3.66 7.73 -2.91 -0.02 3.64 16 36 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 37 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 38 H 0.41 7.64 8.46 -92.71 -0.78 6.85 16 39 H 0.07 1.20 7.76 -2.39 -0.02 1.18 16 40 H 0.12 0.97 8.03 -2.39 -0.02 0.95 16 41 H 0.08 1.34 7.65 -2.38 -0.02 1.32 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 46 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 Total: -1.00 -71.84 366.39 0.49 -71.35 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.20 Total: 18.42 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 4.39 Total: 1.05 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -4.47 Total: -106.05 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.65 Total: -31.61 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.84 0.49 -71.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000968483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.753 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds