Wall clock time and date at job start Tue Mar 31 2020 12:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48503 * 109.46934 * 269.99696 * 3 2 1 5 5 H 1.48498 * 109.47228 * 29.99464 * 3 2 1 6 6 H 1.48501 * 109.47453 * 150.00202 * 3 2 1 7 7 C 1.38814 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99541 * 180.27626 * 7 2 1 9 9 N 1.36930 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64727 * 13.95108 * 9 7 2 11 11 C 1.54913 * 104.83102 * 155.83742 * 10 9 7 12 12 C 1.55159 * 101.58027 * 37.00737 * 11 10 9 13 13 C 1.47019 * 125.64839 * 193.64652 * 9 7 2 14 14 H 1.09000 * 109.88448 * 300.51343 * 13 9 7 15 15 C 1.53004 * 109.88595 * 61.68005 * 13 9 7 16 16 C 1.53037 * 109.46301 * 182.12366 * 15 13 9 17 17 C 1.53188 * 109.31215 * 178.61040 * 16 15 13 18 18 N 1.46934 * 108.77584 * 54.63272 * 17 16 15 19 19 C 1.34779 * 120.63113 * 126.37139 * 18 17 16 20 20 O 1.21694 * 119.99836 * 186.20838 * 19 18 17 21 21 C 1.46660 * 119.99832 * 6.20120 * 19 18 17 22 22 C 1.36540 * 125.98491 * 187.51057 * 21 19 18 23 23 C 1.40368 * 106.71010 * 179.97438 * 22 21 19 24 24 C 1.35134 * 107.11042 * 0.02562 * 23 22 21 25 25 O 1.33928 * 108.76587 * 359.74776 * 24 23 22 26 26 C 1.46921 * 118.73860 * 306.39101 * 18 17 16 27 27 C 1.53035 * 109.46184 * 62.04718 * 15 13 9 28 28 H 0.97005 * 119.99635 * 0.02562 * 1 2 3 29 29 H 1.08996 * 110.36614 * 274.67449 * 10 9 7 30 30 H 1.08996 * 110.36236 * 36.88725 * 10 9 7 31 31 H 1.08991 * 111.00134 * 155.08393 * 11 10 9 32 32 H 1.08994 * 111.00371 * 278.89935 * 11 10 9 33 33 H 1.09006 * 110.71762 * 82.86214 * 12 11 10 34 34 H 1.09002 * 110.71988 * 206.13108 * 12 11 10 35 35 H 1.09008 * 109.45335 * 302.08171 * 15 13 9 36 36 H 1.09001 * 109.49183 * 298.56018 * 16 15 13 37 37 H 1.08998 * 109.50110 * 58.65886 * 16 15 13 38 38 H 1.09003 * 109.58702 * 294.84487 * 17 16 15 39 39 H 1.09000 * 109.58629 * 174.41550 * 17 16 15 40 40 H 1.07999 * 126.64630 * 0.02562 * 22 21 19 41 41 H 1.07995 * 126.44429 * 179.97438 * 23 22 21 42 42 H 1.08004 * 125.61177 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.58608 * 293.82527 * 26 18 17 44 44 H 1.09001 * 109.58831 * 173.39984 * 26 18 17 45 45 H 1.09004 * 109.49920 * 301.34039 * 27 15 13 46 46 H 1.08994 * 109.49791 * 61.40666 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0050 9 7 1.3255 -2.3880 0.0005 10 6 -0.1109 -2.5508 -0.2888 11 6 -0.2550 -4.0165 -0.7692 12 6 0.7661 -4.7453 0.1438 13 6 1.9024 -3.7105 0.2829 14 1 2.6953 -3.9295 -0.4322 15 6 2.4594 -3.7419 1.7076 16 6 3.1042 -5.1042 1.9731 17 6 3.6912 -5.1197 3.3880 18 7 2.6349 -4.7557 4.3423 19 6 2.3555 -5.5513 5.3938 20 8 1.4062 -5.2990 6.1122 21 6 3.1954 -6.7209 5.6719 22 6 2.9454 -7.6840 6.6069 23 6 4.0015 -8.6055 6.5295 24 6 4.8395 -8.1695 5.5631 25 8 4.3477 -7.0366 5.0453 26 6 1.8887 -3.5083 4.1282 27 6 1.3219 -3.5108 2.7050 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7005 -2.3876 0.6133 30 1 -0.4203 -1.8605 -1.0735 31 1 -1.2659 -4.3862 -0.5976 32 1 0.0209 -4.1125 -1.8192 33 1 0.3237 -4.9705 1.1143 34 1 1.1315 -5.6540 -0.3348 35 1 3.2077 -2.9576 1.8222 36 1 2.3509 -5.8869 1.8831 37 1 3.8989 -5.2782 1.2477 38 1 4.5067 -4.3993 3.4532 39 1 4.0634 -6.1180 3.6182 40 1 2.0987 -7.7287 7.2759 41 1 4.1221 -9.4950 7.1299 42 1 5.7532 -8.6567 5.2563 43 1 2.5572 -2.6565 4.2538 44 1 1.0717 -3.4433 4.8469 45 1 0.8481 -2.5507 2.5005 46 1 0.5852 -4.3082 2.6077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004328245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:54 Heat of formation + Delta-G solvation = 15.006872 kcal Electronic energy + Delta-G solvation = -27842.715403 eV Core-core repulsion = 24121.020519 eV Total energy + Delta-G solvation = -3721.694884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.93753 -39.95615 -38.37186 -36.42667 -33.46919 -32.94343 -32.16407 -31.17133 -29.83914 -29.30459 -27.61578 -24.87859 -24.23181 -23.36993 -22.42124 -21.91672 -21.08952 -20.22219 -19.79716 -18.48549 -17.56278 -16.90192 -16.54315 -16.46608 -15.83556 -15.12951 -14.81308 -14.60280 -14.22151 -13.91711 -13.83147 -13.57754 -13.35539 -13.09439 -13.03344 -12.87897 -12.46144 -12.12066 -11.89051 -11.84867 -11.48058 -11.20568 -10.95766 -10.88786 -10.75615 -10.41979 -10.28421 -10.26170 -10.10890 -9.99494 -9.81534 -9.65665 -9.53960 -9.41848 -8.97389 -8.57239 -8.47749 -6.74396 -5.71907 -3.06515 0.91382 2.14958 2.46302 3.04164 3.17494 3.39406 3.45267 3.46814 4.34471 4.49926 4.66346 4.73102 5.01884 5.13585 5.24359 5.35484 5.41852 5.46836 5.48716 5.52262 5.55962 5.69136 5.74163 5.78379 5.89298 5.89904 5.94129 6.05518 6.10301 6.19240 6.22606 6.29575 6.38154 6.49086 6.54213 6.60625 6.65680 6.68340 6.79629 6.98818 7.06747 7.16752 7.39266 7.58618 7.65800 7.83686 8.03636 8.31803 9.23181 9.84795 10.54373 11.39912 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.003468 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.076867 B = 8071.992753 C = 8481.869317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.150 4.150 12 C -0.130 4.130 13 C 0.168 3.832 14 H 0.031 0.969 15 C -0.093 4.093 16 C -0.128 4.128 17 C 0.096 3.904 18 N -0.594 5.594 19 C 0.596 3.404 20 O -0.528 6.528 21 C -0.069 4.069 22 C -0.126 4.126 23 C -0.224 4.224 24 C -0.020 4.020 25 O -0.156 6.156 26 C 0.111 3.889 27 C -0.118 4.118 28 H 0.252 0.748 29 H 0.024 0.976 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.159 0.841 41 H 0.154 0.846 42 H 0.208 0.792 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -16.725 8.394 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.201 4.201 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.049 3.951 11 C -0.189 4.189 12 C -0.168 4.168 13 C 0.060 3.940 14 H 0.048 0.952 15 C -0.114 4.114 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.326 5.326 19 C 0.384 3.616 20 O -0.407 6.407 21 C -0.120 4.120 22 C -0.147 4.147 23 C -0.243 4.243 24 C -0.089 4.089 25 O -0.052 6.052 26 C -0.010 4.010 27 C -0.156 4.156 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.863 -16.112 8.507 19.844 hybrid contribution 0.599 0.672 0.137 0.910 sum 8.462 -15.440 8.644 19.614 Atomic orbital electron populations 1.69935 1.04888 1.25008 1.56551 1.24844 0.95601 0.97571 1.02083 0.86216 0.78706 0.83897 0.77520 1.21739 1.21738 1.20735 1.18924 0.90221 0.82342 1.43757 0.90955 1.44487 1.05640 1.00980 1.80576 1.21411 0.85127 0.89977 0.98603 1.23010 0.97437 0.99885 0.98571 1.22698 0.97247 0.97114 0.99705 1.20912 0.93836 0.86984 0.92277 0.95158 1.21593 0.97357 0.94964 0.97496 1.21992 1.00541 0.99384 0.94737 1.22228 0.89360 1.01842 0.89149 1.48110 1.36724 1.22839 1.24912 1.16728 0.83107 0.80502 0.81300 1.90861 1.28496 1.71645 1.49693 1.22214 0.89441 1.00462 0.99912 1.21965 1.00460 0.93293 0.98963 1.21837 0.96459 1.03049 1.02965 1.24530 1.00397 0.87308 0.96692 1.84286 1.32958 1.36861 1.51081 1.21850 0.96281 0.83802 0.99093 1.21905 0.98009 1.04015 0.91654 0.93779 0.95823 0.91274 0.92687 0.92620 0.91393 0.92877 0.91096 0.91789 0.90999 0.91220 0.88335 0.82365 0.82787 0.77581 0.91171 0.89287 0.88557 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.17 10.55 55.49 0.59 -25.59 16 2 C 0.00 -0.12 5.47 -17.43 -0.10 -0.21 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.22 -5.91 9.77 -15.06 -0.15 -6.06 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.59 -14.17 2.45 -162.58 -0.40 -14.56 16 10 C 0.17 4.09 5.43 -2.52 -0.01 4.08 16 11 C -0.15 -2.83 7.08 -24.58 -0.17 -3.00 16 12 C -0.13 -2.23 5.29 -24.90 -0.13 -2.36 16 13 C 0.17 3.24 2.91 -66.96 -0.19 3.04 16 14 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 15 C -0.09 -1.59 1.94 -90.58 -0.18 -1.77 16 16 C -0.13 -1.73 5.15 -26.61 -0.14 -1.87 16 17 C 0.10 1.22 6.14 -3.71 -0.02 1.20 16 18 N -0.59 -8.80 2.97 -174.31 -0.52 -9.32 16 19 C 0.60 9.26 7.65 -12.86 -0.10 9.17 16 20 O -0.53 -9.66 16.29 5.19 0.08 -9.58 16 21 C -0.07 -0.88 6.78 -36.80 -0.25 -1.13 16 22 C -0.13 -1.41 10.63 -39.39 -0.42 -1.83 16 23 C -0.22 -1.87 10.88 -39.89 -0.43 -2.31 16 24 C -0.02 -0.15 12.08 29.63 0.36 0.20 16 25 O -0.16 -1.67 7.22 5.02 0.04 -1.64 16 26 C 0.11 1.78 6.44 -3.71 -0.02 1.76 16 27 C -0.12 -2.08 4.90 -26.61 -0.13 -2.21 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.07 1.84 6.87 -51.93 -0.36 1.48 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.15 5.47 -51.93 -0.28 0.87 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.34 7.93 -51.92 -0.41 0.93 16 36 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.13 4.17 -53.44 -0.22 0.91 16 40 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.07 1.11 8.14 -51.92 -0.42 0.68 16 44 H 0.09 1.49 7.00 -51.93 -0.36 1.13 16 45 H 0.10 2.06 7.65 -51.93 -0.40 1.66 16 46 H 0.06 1.06 5.94 -51.93 -0.31 0.75 16 LS Contribution 356.67 15.07 5.38 5.38 Total: -1.00 -30.72 356.67 -8.87 -39.59 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.92 Total: 2.38 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.09 Total: -3.30 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.33 Total: -49.47 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.12 Total: -11.21 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.72 -8.87 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004328245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.600 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds