Wall clock time and date at job start Tue Mar 31 2020 12:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48503 * 109.46934 * 269.99696 * 3 2 1 5 5 H 1.48498 * 109.47228 * 29.99464 * 3 2 1 6 6 H 1.48501 * 109.47453 * 150.00202 * 3 2 1 7 7 C 1.38814 * 119.99690 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99541 * 180.27626 * 7 2 1 9 9 N 1.36930 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.47430 * 125.64727 * 13.95108 * 9 7 2 11 11 C 1.54913 * 104.83102 * 155.83742 * 10 9 7 12 12 C 1.55159 * 101.58027 * 37.00737 * 11 10 9 13 13 C 1.47019 * 125.64839 * 193.64652 * 9 7 2 14 14 H 1.09000 * 109.88448 * 300.51343 * 13 9 7 15 15 C 1.53004 * 109.88595 * 61.68005 * 13 9 7 16 16 C 1.53037 * 109.46301 * 182.12366 * 15 13 9 17 17 C 1.53188 * 109.31215 * 178.61040 * 16 15 13 18 18 N 1.46934 * 108.77584 * 54.63272 * 17 16 15 19 19 C 1.34779 * 120.63113 * 126.37139 * 18 17 16 20 20 O 1.21694 * 119.99836 * 186.20838 * 19 18 17 21 21 C 1.46660 * 119.99832 * 6.20120 * 19 18 17 22 22 C 1.36540 * 125.98491 * 187.51057 * 21 19 18 23 23 C 1.40368 * 106.71010 * 179.97438 * 22 21 19 24 24 C 1.35134 * 107.11042 * 0.02562 * 23 22 21 25 25 O 1.33928 * 108.76587 * 359.74776 * 24 23 22 26 26 C 1.46921 * 118.73860 * 306.39101 * 18 17 16 27 27 C 1.53035 * 109.46184 * 62.04718 * 15 13 9 28 28 H 0.97005 * 119.99635 * 0.02562 * 1 2 3 29 29 H 1.08996 * 110.36614 * 274.67449 * 10 9 7 30 30 H 1.08996 * 110.36236 * 36.88725 * 10 9 7 31 31 H 1.08991 * 111.00134 * 155.08393 * 11 10 9 32 32 H 1.08994 * 111.00371 * 278.89935 * 11 10 9 33 33 H 1.09006 * 110.71762 * 82.86214 * 12 11 10 34 34 H 1.09002 * 110.71988 * 206.13108 * 12 11 10 35 35 H 1.09008 * 109.45335 * 302.08171 * 15 13 9 36 36 H 1.09001 * 109.49183 * 298.56018 * 16 15 13 37 37 H 1.08998 * 109.50110 * 58.65886 * 16 15 13 38 38 H 1.09003 * 109.58702 * 294.84487 * 17 16 15 39 39 H 1.09000 * 109.58629 * 174.41550 * 17 16 15 40 40 H 1.07999 * 126.64630 * 0.02562 * 22 21 19 41 41 H 1.07995 * 126.44429 * 179.97438 * 23 22 21 42 42 H 1.08004 * 125.61177 * 179.97438 * 24 23 22 43 43 H 1.09008 * 109.58608 * 293.82527 * 26 18 17 44 44 H 1.09001 * 109.58831 * 173.39984 * 26 18 17 45 45 H 1.09004 * 109.49920 * 301.34039 * 27 15 13 46 46 H 1.08994 * 109.49791 * 61.40666 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0050 9 7 1.3255 -2.3880 0.0005 10 6 -0.1109 -2.5508 -0.2888 11 6 -0.2550 -4.0165 -0.7692 12 6 0.7661 -4.7453 0.1438 13 6 1.9024 -3.7105 0.2829 14 1 2.6953 -3.9295 -0.4322 15 6 2.4594 -3.7419 1.7076 16 6 3.1042 -5.1042 1.9731 17 6 3.6912 -5.1197 3.3880 18 7 2.6349 -4.7557 4.3423 19 6 2.3555 -5.5513 5.3938 20 8 1.4062 -5.2990 6.1122 21 6 3.1954 -6.7209 5.6719 22 6 2.9454 -7.6840 6.6069 23 6 4.0015 -8.6055 6.5295 24 6 4.8395 -8.1695 5.5631 25 8 4.3477 -7.0366 5.0453 26 6 1.8887 -3.5083 4.1282 27 6 1.3219 -3.5108 2.7050 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7005 -2.3876 0.6133 30 1 -0.4203 -1.8605 -1.0735 31 1 -1.2659 -4.3862 -0.5976 32 1 0.0209 -4.1125 -1.8192 33 1 0.3237 -4.9705 1.1143 34 1 1.1315 -5.6540 -0.3348 35 1 3.2077 -2.9576 1.8222 36 1 2.3509 -5.8869 1.8831 37 1 3.8989 -5.2782 1.2477 38 1 4.5067 -4.3993 3.4532 39 1 4.0634 -6.1180 3.6182 40 1 2.0987 -7.7287 7.2759 41 1 4.1221 -9.4950 7.1299 42 1 5.7532 -8.6567 5.2563 43 1 2.5572 -2.6565 4.2538 44 1 1.0717 -3.4433 4.8469 45 1 0.8481 -2.5507 2.5005 46 1 0.5852 -4.3082 2.6077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004328245.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:52 Heat of formation + Delta-G solvation = -2.314130 kcal Electronic energy + Delta-G solvation = -27843.466498 eV Core-core repulsion = 24121.020519 eV Total energy + Delta-G solvation = -3722.445979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.70348 -41.19579 -39.82975 -37.83019 -34.80578 -34.13633 -33.70054 -32.36265 -31.24133 -30.67626 -29.07761 -26.58433 -25.73054 -24.58668 -23.54163 -22.67641 -22.40105 -21.73851 -21.08559 -19.86639 -18.68910 -18.51493 -17.66189 -17.39453 -17.03116 -16.75804 -16.37342 -15.88575 -15.72216 -15.34534 -15.28164 -14.64089 -14.48193 -14.20321 -14.08613 -13.89327 -13.86757 -13.56492 -13.50168 -13.19468 -12.95968 -12.82105 -12.76013 -12.59648 -12.18097 -12.01751 -11.85005 -11.74233 -11.50788 -11.48198 -11.21687 -11.12179 -10.94672 -10.92187 -10.60618 -9.92611 -9.53104 -8.71689 -7.80093 -5.14618 0.04022 1.45791 1.46518 1.47124 1.55397 1.57016 2.01267 2.15072 2.52688 3.38413 3.45408 3.67267 3.86700 3.91814 3.95783 4.07401 4.12439 4.20326 4.22709 4.27995 4.32817 4.37967 4.47381 4.63362 4.66548 4.77574 4.79417 4.87363 4.87936 4.93628 5.02175 5.04397 5.09981 5.16557 5.21014 5.23603 5.27229 5.43654 5.54693 5.55911 5.64106 5.68860 5.71796 5.83497 5.89957 6.28646 6.31239 6.88808 7.17215 7.87135 8.55052 9.31067 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.003468 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.076867 B = 8071.992753 C = 8481.869317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.139 4.139 12 C -0.118 4.118 13 C 0.159 3.841 14 H 0.036 0.964 15 C -0.084 4.084 16 C -0.117 4.117 17 C 0.098 3.902 18 N -0.596 5.596 19 C 0.593 3.407 20 O -0.570 6.570 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.232 4.232 24 C 0.007 3.993 25 O -0.162 6.162 26 C 0.119 3.881 27 C -0.104 4.104 28 H 0.243 0.757 29 H -0.009 1.009 30 H 0.029 0.971 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.121 0.879 40 H 0.155 0.845 41 H 0.183 0.817 42 H 0.256 0.744 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.050 0.950 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.330 -20.224 8.513 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.177 4.177 12 C -0.155 4.155 13 C 0.053 3.947 14 H 0.054 0.946 15 C -0.105 4.105 16 C -0.155 4.155 17 C -0.023 4.023 18 N -0.326 5.326 19 C 0.383 3.617 20 O -0.453 6.453 21 C -0.156 4.156 22 C -0.145 4.145 23 C -0.251 4.251 24 C -0.062 4.062 25 O -0.059 6.059 26 C -0.004 4.004 27 C -0.143 4.143 28 H 0.052 0.948 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.173 0.827 41 H 0.201 0.799 42 H 0.272 0.728 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.925 -19.650 8.615 24.077 hybrid contribution -0.266 1.637 0.133 1.663 sum 10.659 -18.013 8.748 22.685 Atomic orbital electron populations 1.70150 1.06238 1.24856 1.58510 1.25565 0.96333 1.00604 1.03099 0.85261 0.77843 0.80113 0.77263 1.21638 1.22694 1.19393 1.19239 0.90604 0.83523 1.41802 0.90542 1.44710 1.05781 1.02111 1.80737 1.21156 0.84896 0.92552 0.96008 1.22884 0.99348 0.96296 0.99183 1.22664 0.95664 0.97458 0.99722 1.21168 0.94732 0.85313 0.93485 0.94604 1.21430 0.96451 0.96934 0.95691 1.21913 1.01142 0.96561 0.95929 1.22376 0.88706 1.03316 0.87899 1.48133 1.36904 1.22117 1.25460 1.17088 0.82939 0.81032 0.80667 1.90823 1.30476 1.72976 1.50976 1.21635 0.91020 1.00706 1.02273 1.22233 1.01003 0.93416 0.97866 1.22190 0.95487 1.03587 1.03832 1.25529 1.00698 0.85199 0.94791 1.84199 1.32166 1.38179 1.51319 1.21581 0.96158 0.84999 0.97619 1.21681 0.98184 1.01369 0.93020 0.94752 0.99055 0.95212 0.90703 0.91845 0.91221 0.89274 0.93087 0.91206 0.88593 0.90508 0.86211 0.82736 0.79931 0.72821 0.91218 0.90621 0.93150 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.08 10.55 21.65 0.23 -56.85 16 2 C -0.06 -3.54 5.47 84.86 0.46 -3.08 16 3 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.22 -12.02 9.77 84.04 0.82 -11.20 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.96 16 9 N -0.61 -29.80 2.45 -668.27 -1.64 -31.44 16 10 C 0.18 8.79 5.43 86.86 0.47 9.26 16 11 C -0.14 -5.08 7.08 31.99 0.23 -4.85 16 12 C -0.12 -3.77 5.29 31.78 0.17 -3.61 16 13 C 0.16 5.99 2.91 45.34 0.13 6.13 16 14 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.08 -2.82 1.94 -10.77 -0.02 -2.85 16 16 C -0.12 -2.83 5.15 30.67 0.16 -2.67 16 17 C 0.10 2.25 6.14 86.36 0.53 2.78 16 18 N -0.60 -17.36 2.97 -823.61 -2.45 -19.80 16 19 C 0.59 18.37 7.65 86.44 0.66 19.03 16 20 O -0.57 -21.59 16.29 -4.33 -0.07 -21.66 16 21 C -0.11 -2.54 6.78 24.07 0.16 -2.37 16 22 C -0.12 -2.55 10.63 22.39 0.24 -2.31 16 23 C -0.23 -2.95 10.88 22.07 0.24 -2.71 16 24 C 0.01 0.07 12.08 67.10 0.81 0.88 16 25 O -0.16 -2.90 7.22 -4.94 -0.04 -2.93 16 26 C 0.12 3.96 6.44 86.36 0.56 4.51 16 27 C -0.10 -3.81 4.90 30.67 0.15 -3.66 16 28 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 29 H -0.01 -0.47 8.07 -2.39 -0.02 -0.49 16 30 H 0.03 1.67 6.87 -2.39 -0.02 1.65 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.24 5.47 -2.38 -0.01 2.22 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 36 H 0.07 1.66 7.39 -2.39 -0.02 1.64 16 37 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.12 2.32 4.17 -26.31 -0.11 2.21 16 40 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 41 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.26 -0.04 8.06 -2.91 -0.02 -0.06 16 43 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.08 2.71 7.00 -2.39 -0.02 2.70 16 45 H 0.05 2.30 7.65 -2.38 -0.02 2.28 16 46 H 0.06 2.14 5.94 -2.39 -0.01 2.13 16 Total: -1.00 -72.11 356.67 4.71 -67.40 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.88 Total: 14.13 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 5.77 Total: 3.29 kcal Atomic # 7 Polarization: -104.23 SS G_CDS: -3.86 Total: -108.09 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.11 Total: -24.59 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.11 4.71 -67.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004328245.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.088 kcal (2) G-P(sol) polarization free energy of solvation -72.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds