Wall clock time and date at job start Tue Mar 31 2020 12:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99709 * 2 1 4 4 H 1.48497 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47058 * 299.99810 * 3 2 1 6 6 H 1.48495 * 109.47593 * 59.99892 * 3 2 1 7 7 C 1.38807 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99888 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.47418 * 125.65118 * 345.64668 * 9 7 2 11 11 C 1.54905 * 104.83589 * 204.09297 * 10 9 7 12 12 C 1.55150 * 101.58256 * 322.99244 * 11 10 9 13 13 C 1.47025 * 125.64863 * 165.60743 * 9 7 2 14 14 H 1.08999 * 109.87870 * 59.39757 * 13 9 7 15 15 C 1.53006 * 109.87960 * 298.39311 * 13 9 7 16 16 C 1.53039 * 109.45780 * 182.01868 * 15 13 9 17 17 C 1.53195 * 109.31069 * 181.37206 * 16 15 13 18 18 N 1.46923 * 108.77459 * 305.36249 * 17 16 15 19 19 C 1.34772 * 120.63352 * 233.58742 * 18 17 16 20 20 O 1.21619 * 119.99937 * 6.27652 * 19 18 17 21 21 C 1.47381 * 120.00046 * 186.28121 * 19 18 17 22 22 C 1.47021 * 127.19415 * 27.03233 * 21 19 18 23 23 C 1.34181 * 105.94895 * 180.02562 * 22 21 19 24 24 O 1.34207 * 109.13078 * 0.02562 * 23 22 21 25 25 C 1.33654 * 110.90700 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73832 * 53.86127 * 18 17 16 27 27 C 1.53039 * 109.44938 * 302.07949 * 15 13 9 28 28 H 0.96997 * 119.99587 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36859 * 322.92963 * 10 9 7 30 30 H 1.09002 * 110.36858 * 85.14000 * 10 9 7 31 31 H 1.09010 * 111.00322 * 81.05982 * 11 10 9 32 32 H 1.09003 * 111.01143 * 204.91440 * 11 10 9 33 33 H 1.09005 * 110.71869 * 277.13961 * 12 11 10 34 34 H 1.08997 * 110.72686 * 153.86416 * 12 11 10 35 35 H 1.09001 * 109.45830 * 62.04460 * 15 13 9 36 36 H 1.09003 * 109.49805 * 61.42135 * 16 15 13 37 37 H 1.08998 * 109.49605 * 301.32005 * 16 15 13 38 38 H 1.09001 * 109.58525 * 185.57892 * 17 16 15 39 39 H 1.08997 * 109.70164 * 65.22312 * 17 16 15 40 40 H 1.07997 * 127.02258 * 359.73642 * 22 21 19 41 41 H 1.08001 * 125.42923 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.80122 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.58788 * 65.92854 * 26 18 17 44 44 H 1.09000 * 109.59160 * 186.35075 * 26 18 17 45 45 H 1.08997 * 109.49837 * 298.57735 * 27 15 13 46 46 H 1.09004 * 109.49796 * 58.66983 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1091 -2.5518 0.2970 11 6 -0.2510 -4.0195 0.7718 12 6 0.7650 -4.7446 -0.1497 13 6 1.8995 -3.7088 -0.2959 14 1 2.7010 -3.9313 0.4086 15 6 2.4432 -3.7308 -1.7260 16 6 2.9924 -5.1240 -2.0412 17 6 3.5667 -5.1327 -3.4614 18 7 2.5305 -4.6675 -4.3934 19 6 2.1909 -5.4071 -5.4676 20 8 2.6591 -6.5202 -5.6122 21 6 1.2521 -4.8670 -6.4672 22 6 1.0142 -3.4526 -6.7899 23 6 0.0809 -3.4463 -7.7540 24 8 -0.2641 -4.7112 -8.0404 25 6 0.4216 -5.5752 -7.2856 26 6 1.8759 -3.3777 -4.1354 27 6 1.3167 -3.3912 -2.7046 28 1 -0.4849 0.8401 0.0004 29 1 -0.4138 -1.8662 1.0877 30 1 -0.7037 -2.3826 -0.6008 31 1 0.0314 -4.1200 1.8199 32 1 -1.2629 -4.3884 0.6043 33 1 0.3173 -4.9656 -1.1187 34 1 1.1328 -5.6553 0.3230 35 1 3.2418 -2.9952 -1.8222 36 1 2.1886 -5.8568 -1.9693 37 1 3.7787 -5.3747 -1.3293 38 1 3.8689 -6.1458 -3.7271 39 1 4.4294 -4.4687 -3.5130 40 1 1.4897 -2.5939 -6.3394 41 1 -0.3280 -2.5639 -8.2237 42 1 0.3327 -6.6511 -7.3176 43 1 2.6025 -2.5718 -4.2390 44 1 1.0621 -3.2322 -4.8458 45 1 0.5287 -4.1402 -2.6264 46 1 0.9103 -2.4086 -2.4648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004353936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:58 Heat of formation + Delta-G solvation = 11.767543 kcal Electronic energy + Delta-G solvation = -27938.214548 eV Core-core repulsion = 24216.379196 eV Total energy + Delta-G solvation = -3721.835352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.68311 -39.95540 -38.32155 -36.28082 -33.59336 -32.72781 -31.99664 -30.64995 -29.91476 -29.33994 -27.67879 -24.93371 -24.34569 -23.33288 -22.59515 -21.57081 -20.98088 -20.03277 -19.50144 -18.50378 -17.47000 -16.75759 -16.42587 -16.16513 -15.84177 -15.11672 -14.91977 -14.65636 -14.55658 -13.91003 -13.85562 -13.67650 -13.27242 -13.12423 -12.90945 -12.51114 -12.43140 -12.11465 -11.86476 -11.84203 -11.46505 -11.20658 -10.96808 -10.93074 -10.80251 -10.44628 -10.16655 -10.05718 -10.01842 -9.84725 -9.76210 -9.61080 -9.56617 -9.37458 -8.94483 -8.59241 -8.42579 -6.76080 -5.75256 -3.09740 1.34456 1.92867 2.78513 3.07534 3.30965 3.35834 3.43135 3.44471 4.42557 4.47172 4.62810 4.86880 5.07832 5.14960 5.27117 5.33259 5.38998 5.44677 5.47100 5.54625 5.63179 5.69408 5.74156 5.82629 5.84186 5.89921 5.94306 6.03051 6.09618 6.22473 6.23324 6.33412 6.40597 6.49938 6.56783 6.61316 6.67809 6.78754 6.84715 6.97693 7.05960 7.17215 7.52980 7.56289 7.63709 7.80949 8.23464 8.28957 9.20565 9.82006 10.51994 11.36760 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.004121 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.340461 B = 6792.321900 C = 7572.824119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.222 4.222 8 H 0.073 0.927 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.151 4.151 12 C -0.127 4.127 13 C 0.167 3.833 14 H 0.031 0.969 15 C -0.092 4.092 16 C -0.128 4.128 17 C 0.114 3.886 18 N -0.596 5.596 19 C 0.588 3.412 20 O -0.555 6.555 21 C -0.234 4.234 22 C -0.192 4.192 23 C -0.037 4.037 24 O -0.178 6.178 25 C 0.040 3.960 26 C 0.091 3.909 27 C -0.117 4.117 28 H 0.251 0.749 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.164 0.836 41 H 0.208 0.792 42 H 0.214 0.786 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.410 -8.609 -11.359 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.350 4.350 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.189 4.189 12 C -0.165 4.165 13 C 0.059 3.941 14 H 0.048 0.952 15 C -0.113 4.113 16 C -0.167 4.167 17 C -0.008 4.008 18 N -0.328 5.328 19 C 0.377 3.623 20 O -0.435 6.435 21 C -0.239 4.239 22 C -0.211 4.211 23 C -0.103 4.103 24 O -0.073 6.073 25 C -0.030 4.030 26 C -0.031 4.031 27 C -0.154 4.154 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.182 0.818 41 H 0.225 0.775 42 H 0.231 0.769 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.075 0.925 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.404 -8.995 -11.605 14.689 hybrid contribution 0.616 1.209 0.207 1.372 sum 1.020 -7.787 -11.398 13.842 Atomic orbital electron populations 1.69953 1.04878 1.24871 1.56758 1.24839 0.95578 0.97524 1.02136 0.86159 0.78901 0.84191 0.77224 1.20547 1.21817 1.21875 1.18981 0.90269 0.82323 1.43458 0.90931 1.44499 1.05891 1.01142 1.80148 1.21389 0.85182 0.89916 0.98549 1.23015 0.97444 0.99883 0.98590 1.22651 0.97217 0.97152 0.99506 1.20928 0.93900 0.86957 0.92319 0.95166 1.21568 0.97753 0.94601 0.97354 1.21992 1.00806 0.98979 0.94906 1.21631 0.89454 1.00792 0.88960 1.47961 1.39040 1.21491 1.24294 1.17298 0.80277 0.84151 0.80571 1.90757 1.56007 1.19437 1.77321 1.21459 1.04866 0.93854 1.03696 1.23138 1.01566 0.96156 1.00273 1.23968 1.00514 0.85216 1.00636 1.83813 1.54423 1.16168 1.52865 1.24313 0.92390 0.95603 0.90722 1.22493 0.97546 0.83765 0.99327 1.21945 0.97836 1.04020 0.91647 0.93852 0.91421 0.95809 0.92598 0.92706 0.91625 0.92803 0.91378 0.91734 0.91219 0.89516 0.91688 0.81828 0.77532 0.76908 0.91492 0.88687 0.92455 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.62 10.56 55.49 0.59 -25.04 16 2 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 3 Si 0.90 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -5.76 9.85 -15.06 -0.15 -5.91 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.59 -13.94 2.27 -162.58 -0.37 -14.31 16 10 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16 11 C -0.15 -2.80 7.08 -24.59 -0.17 -2.97 16 12 C -0.13 -2.18 5.22 -24.90 -0.13 -2.31 16 13 C 0.17 3.21 2.95 -66.95 -0.20 3.01 16 14 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 15 C -0.09 -1.56 1.91 -90.58 -0.17 -1.74 16 16 C -0.13 -1.83 5.10 -26.61 -0.14 -1.97 16 17 C 0.11 1.59 6.44 -3.71 -0.02 1.57 16 18 N -0.60 -8.72 2.97 -173.79 -0.52 -9.24 16 19 C 0.59 9.06 7.65 -12.54 -0.10 8.97 16 20 O -0.55 -9.93 16.44 5.26 0.09 -9.84 16 21 C -0.23 -3.05 5.73 -103.27 -0.59 -3.64 16 22 C -0.19 -2.11 8.68 -37.45 -0.33 -2.43 16 23 C -0.04 -0.34 12.03 29.30 0.35 0.01 16 24 O -0.18 -1.84 10.52 7.67 0.08 -1.76 16 25 C 0.04 0.44 12.00 30.08 0.36 0.80 16 26 C 0.09 1.29 5.33 -3.49 -0.02 1.28 16 27 C -0.12 -1.97 4.95 -26.39 -0.13 -2.10 16 28 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.07 1.77 6.91 -51.93 -0.36 1.42 16 30 H 0.02 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.10 5.49 -51.93 -0.29 0.82 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 36 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.16 1.64 6.50 -52.49 -0.34 1.30 16 41 H 0.21 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.21 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 1.25 3.99 -51.93 -0.21 1.04 16 45 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 46 H 0.10 2.00 7.53 -51.93 -0.39 1.61 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -30.65 355.43 -8.16 -38.81 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.82 Total: 3.44 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.54 Total: -3.62 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.30 Total: -48.58 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.17 Total: -11.61 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.65 -8.16 -38.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004353936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.574 kcal (2) G-P(sol) polarization free energy of solvation -30.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds