Wall clock time and date at job start Tue Mar 31 2020 12:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86795 * 119.99709 * 2 1 4 4 H 1.48497 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47058 * 299.99810 * 3 2 1 6 6 H 1.48495 * 109.47593 * 59.99892 * 3 2 1 7 7 C 1.38807 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99888 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99828 * 0.02562 * 7 2 1 10 10 C 1.47418 * 125.65118 * 345.64668 * 9 7 2 11 11 C 1.54905 * 104.83589 * 204.09297 * 10 9 7 12 12 C 1.55150 * 101.58256 * 322.99244 * 11 10 9 13 13 C 1.47025 * 125.64863 * 165.60743 * 9 7 2 14 14 H 1.08999 * 109.87870 * 59.39757 * 13 9 7 15 15 C 1.53006 * 109.87960 * 298.39311 * 13 9 7 16 16 C 1.53039 * 109.45780 * 182.01868 * 15 13 9 17 17 C 1.53195 * 109.31069 * 181.37206 * 16 15 13 18 18 N 1.46923 * 108.77459 * 305.36249 * 17 16 15 19 19 C 1.34772 * 120.63352 * 233.58742 * 18 17 16 20 20 O 1.21619 * 119.99937 * 6.27652 * 19 18 17 21 21 C 1.47381 * 120.00046 * 186.28121 * 19 18 17 22 22 C 1.47021 * 127.19415 * 27.03233 * 21 19 18 23 23 C 1.34181 * 105.94895 * 180.02562 * 22 21 19 24 24 O 1.34207 * 109.13078 * 0.02562 * 23 22 21 25 25 C 1.33654 * 110.90700 * 359.97438 * 24 23 22 26 26 C 1.46927 * 118.73832 * 53.86127 * 18 17 16 27 27 C 1.53039 * 109.44938 * 302.07949 * 15 13 9 28 28 H 0.96997 * 119.99587 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.36859 * 322.92963 * 10 9 7 30 30 H 1.09002 * 110.36858 * 85.14000 * 10 9 7 31 31 H 1.09010 * 111.00322 * 81.05982 * 11 10 9 32 32 H 1.09003 * 111.01143 * 204.91440 * 11 10 9 33 33 H 1.09005 * 110.71869 * 277.13961 * 12 11 10 34 34 H 1.08997 * 110.72686 * 153.86416 * 12 11 10 35 35 H 1.09001 * 109.45830 * 62.04460 * 15 13 9 36 36 H 1.09003 * 109.49805 * 61.42135 * 16 15 13 37 37 H 1.08998 * 109.49605 * 301.32005 * 16 15 13 38 38 H 1.09001 * 109.58525 * 185.57892 * 17 16 15 39 39 H 1.08997 * 109.70164 * 65.22312 * 17 16 15 40 40 H 1.07997 * 127.02258 * 359.73642 * 22 21 19 41 41 H 1.08001 * 125.42923 * 179.97438 * 23 22 21 42 42 H 1.08002 * 125.80122 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.58788 * 65.92854 * 26 18 17 44 44 H 1.09000 * 109.59160 * 186.35075 * 26 18 17 45 45 H 1.08997 * 109.49837 * 298.57735 * 27 15 13 46 46 H 1.09004 * 109.49796 * 58.66983 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1091 -2.5518 0.2970 11 6 -0.2510 -4.0195 0.7718 12 6 0.7650 -4.7446 -0.1497 13 6 1.8995 -3.7088 -0.2959 14 1 2.7010 -3.9313 0.4086 15 6 2.4432 -3.7308 -1.7260 16 6 2.9924 -5.1240 -2.0412 17 6 3.5667 -5.1327 -3.4614 18 7 2.5305 -4.6675 -4.3934 19 6 2.1909 -5.4071 -5.4676 20 8 2.6591 -6.5202 -5.6122 21 6 1.2521 -4.8670 -6.4672 22 6 1.0142 -3.4526 -6.7899 23 6 0.0809 -3.4463 -7.7540 24 8 -0.2641 -4.7112 -8.0404 25 6 0.4216 -5.5752 -7.2856 26 6 1.8759 -3.3777 -4.1354 27 6 1.3167 -3.3912 -2.7046 28 1 -0.4849 0.8401 0.0004 29 1 -0.4138 -1.8662 1.0877 30 1 -0.7037 -2.3826 -0.6008 31 1 0.0314 -4.1200 1.8199 32 1 -1.2629 -4.3884 0.6043 33 1 0.3173 -4.9656 -1.1187 34 1 1.1328 -5.6553 0.3230 35 1 3.2418 -2.9952 -1.8222 36 1 2.1886 -5.8568 -1.9693 37 1 3.7787 -5.3747 -1.3293 38 1 3.8689 -6.1458 -3.7271 39 1 4.4294 -4.4687 -3.5130 40 1 1.4897 -2.5939 -6.3394 41 1 -0.3280 -2.5639 -8.2237 42 1 0.3327 -6.6511 -7.3176 43 1 2.6025 -2.5718 -4.2390 44 1 1.0621 -3.2322 -4.8458 45 1 0.5287 -4.1402 -2.6264 46 1 0.9103 -2.4086 -2.4648 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004353936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:57 Heat of formation + Delta-G solvation = -4.996072 kcal Electronic energy + Delta-G solvation = -27938.941473 eV Core-core repulsion = 24216.379196 eV Total energy + Delta-G solvation = -3722.562277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.50683 -41.19182 -39.78193 -37.68187 -34.87656 -34.26107 -33.35728 -31.85643 -31.16242 -30.74192 -29.15466 -26.58291 -25.85041 -24.55099 -23.79240 -22.52537 -22.25458 -21.67494 -20.62925 -19.79862 -18.74972 -18.34631 -17.62266 -17.04690 -16.96069 -16.75937 -16.34860 -16.05637 -15.69760 -15.47489 -15.30177 -14.80788 -14.49631 -14.28708 -14.04962 -13.89757 -13.81416 -13.47383 -13.39011 -13.11440 -12.97103 -12.79134 -12.76249 -12.57223 -12.18746 -11.96226 -11.81894 -11.77396 -11.49040 -11.27342 -11.16410 -11.13310 -10.96132 -10.62727 -10.55815 -9.81118 -9.58489 -8.69725 -7.79079 -5.13650 0.42981 1.11527 1.46982 1.49029 1.57578 1.87968 2.08845 2.24984 2.53696 3.39573 3.50496 3.67685 3.77464 3.85308 3.96610 4.03485 4.17187 4.18509 4.24736 4.26056 4.34446 4.40484 4.50260 4.59665 4.65625 4.70326 4.80040 4.82169 4.89732 4.93136 5.04743 5.07648 5.09656 5.10930 5.20097 5.26794 5.31200 5.38566 5.54968 5.57080 5.64909 5.71618 5.73682 5.84673 6.02554 6.32249 6.36940 7.07233 7.19008 7.87897 8.56248 9.32280 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.004121 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.340461 B = 6792.321900 C = 7572.824119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.298 1.298 7 C -0.222 4.222 8 H 0.073 0.927 9 N -0.607 5.607 10 C 0.181 3.819 11 C -0.139 4.139 12 C -0.115 4.115 13 C 0.158 3.842 14 H 0.029 0.971 15 C -0.083 4.083 16 C -0.116 4.116 17 C 0.113 3.887 18 N -0.596 5.596 19 C 0.586 3.414 20 O -0.585 6.585 21 C -0.267 4.267 22 C -0.212 4.212 23 C -0.022 4.022 24 O -0.178 6.178 25 C 0.049 3.951 26 C 0.101 3.899 27 C -0.105 4.105 28 H 0.244 0.756 29 H 0.028 0.972 30 H -0.002 1.002 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.169 0.831 41 H 0.246 0.754 42 H 0.234 0.766 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.802 -9.753 -12.501 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.250 4.250 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.226 1.226 7 C -0.352 4.352 8 H 0.091 0.909 9 N -0.332 5.332 10 C 0.056 3.944 11 C -0.178 4.178 12 C -0.153 4.153 13 C 0.052 3.948 14 H 0.046 0.954 15 C -0.104 4.104 16 C -0.154 4.154 17 C -0.009 4.009 18 N -0.327 5.327 19 C 0.377 3.623 20 O -0.468 6.468 21 C -0.272 4.272 22 C -0.231 4.231 23 C -0.088 4.088 24 O -0.072 6.072 25 C -0.021 4.021 26 C -0.021 4.021 27 C -0.143 4.143 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.016 0.984 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.186 0.814 41 H 0.262 0.738 42 H 0.250 0.750 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.074 0.926 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.820 -10.158 -12.748 16.321 hybrid contribution 0.489 1.549 0.555 1.717 sum 1.310 -8.609 -12.193 14.983 Atomic orbital electron populations 1.70145 1.06121 1.24850 1.58425 1.25496 0.96271 1.00319 1.02934 0.85234 0.78352 0.80626 0.76512 1.19354 1.22006 1.22569 1.19233 0.90473 0.83527 1.41918 0.90932 1.44687 1.06070 1.02069 1.80329 1.21142 0.84864 0.92234 0.96173 1.22897 0.99344 0.96536 0.99005 1.22610 0.95728 0.97283 0.99672 1.21145 0.94628 0.85539 0.93477 0.95372 1.21406 0.97079 0.96025 0.95884 1.21877 1.01246 0.96718 0.95570 1.21672 0.89643 1.01062 0.88507 1.47990 1.38987 1.21357 1.24392 1.17632 0.80178 0.83705 0.80821 1.90729 1.57300 1.20706 1.78072 1.21479 1.05899 0.95305 1.04485 1.23246 1.02844 0.95447 1.01591 1.24674 0.99063 0.85615 0.99406 1.83854 1.54148 1.16677 1.52548 1.24700 0.91319 0.96508 0.89609 1.22389 0.98041 0.83849 0.97838 1.21739 0.97730 1.01453 0.93388 0.94633 0.95351 0.98429 0.92139 0.90511 0.91115 0.89824 0.93169 0.91554 0.89522 0.89506 0.90770 0.81407 0.73808 0.75002 0.91226 0.87337 0.92614 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.87 10.56 21.65 0.23 -54.65 16 2 C -0.06 -3.10 5.47 84.86 0.46 -2.63 16 3 Si 0.96 44.45 29.55 68.60 2.03 46.47 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.22 -11.74 9.85 84.03 0.83 -10.92 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.61 -29.03 2.27 -668.27 -1.52 -30.55 16 10 C 0.18 8.60 5.42 86.85 0.47 9.07 16 11 C -0.14 -5.01 7.08 31.98 0.23 -4.79 16 12 C -0.12 -3.70 5.22 31.78 0.17 -3.54 16 13 C 0.16 5.98 2.95 45.34 0.13 6.11 16 14 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 15 C -0.08 -2.77 1.91 -10.77 -0.02 -2.79 16 16 C -0.12 -3.07 5.10 30.67 0.16 -2.91 16 17 C 0.11 2.99 6.44 86.36 0.56 3.54 16 18 N -0.60 -16.79 2.97 -821.99 -2.44 -19.22 16 19 C 0.59 17.49 7.65 86.65 0.66 18.15 16 20 O -0.59 -20.48 16.44 -4.09 -0.07 -20.54 16 21 C -0.27 -6.60 5.73 -18.99 -0.11 -6.71 16 22 C -0.21 -4.29 8.68 23.65 0.21 -4.09 16 23 C -0.02 -0.35 12.03 66.89 0.80 0.46 16 24 O -0.18 -3.24 10.52 4.53 0.05 -3.19 16 25 C 0.05 0.99 12.00 67.40 0.81 1.80 16 26 C 0.10 2.81 5.33 86.51 0.46 3.28 16 27 C -0.10 -3.54 4.95 30.82 0.15 -3.39 16 28 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.03 1.55 6.91 -2.39 -0.02 1.53 16 30 H 0.00 -0.12 8.06 -2.39 -0.02 -0.14 16 31 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.22 5.49 -2.38 -0.01 2.21 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 36 H 0.07 1.77 7.11 -2.39 -0.02 1.76 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 2.35 7.00 -2.39 -0.02 2.33 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.17 3.14 6.50 -2.91 -0.02 3.12 16 41 H 0.25 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.11 2.78 3.99 -2.39 -0.01 2.77 16 45 H 0.06 1.88 6.13 -2.39 -0.01 1.86 16 46 H 0.06 2.38 7.53 -2.39 -0.02 2.37 16 Total: -1.00 -68.21 355.43 5.23 -62.98 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.98 Total: 18.05 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.97 Total: 0.64 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -3.73 Total: -104.42 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.02 Total: -23.74 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.21 5.23 -62.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004353936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.988 kcal (2) G-P(sol) polarization free energy of solvation -68.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds