Wall clock time and date at job start Tue Mar 31 2020 12:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00321 * 2 1 4 4 C 1.38749 * 120.05600 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94781 * 179.73099 * 4 3 2 6 6 C 1.38293 * 120.04900 * 0.51228 * 5 4 3 7 7 C 1.50704 * 119.94072 * 179.72836 * 6 5 4 8 8 C 1.50699 * 109.47236 * 264.73180 * 7 6 5 9 9 O 1.21282 * 119.99968 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99807 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99806 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.91822 * 31.09777 * 11 10 8 13 13 C 1.55157 * 111.00374 * 155.00501 * 11 10 8 14 14 C 1.54321 * 103.10033 * 153.66359 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.36931 * 125.65157 * 178.90454 * 15 14 13 17 17 H 1.07998 * 120.00396 * 180.02562 * 16 15 14 18 18 C 1.38821 * 119.99902 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47535 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47325 * 120.00134 * 20 18 16 23 23 H 1.48506 * 109.47006 * 239.99849 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 C 1.38239 * 120.11328 * 359.46137 * 6 5 4 26 26 C 1.50700 * 119.97046 * 180.26795 * 25 6 5 27 27 C 1.38163 * 120.05597 * 0.29092 * 25 6 5 28 28 H 1.08997 * 109.47064 * 59.99829 * 1 2 3 29 29 H 1.08999 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47375 * 299.99993 * 1 2 3 31 31 H 1.08004 * 120.02679 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.97790 * 180.27021 * 5 4 3 33 33 H 1.08994 * 109.47115 * 144.73210 * 7 6 5 34 34 H 1.08998 * 109.46906 * 24.73052 * 7 6 5 35 35 H 0.96996 * 120.00687 * 0.02562 * 10 8 7 36 36 H 1.09002 * 110.72219 * 35.21056 * 13 11 10 37 37 H 1.09003 * 110.71618 * 272.11669 * 13 11 10 38 38 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 39 39 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 40 40 H 0.96994 * 119.99831 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 42 42 H 1.08999 * 110.36356 * 265.28933 * 24 15 14 43 43 H 1.09004 * 109.47064 * 90.00101 * 26 25 6 44 44 H 1.08998 * 109.47057 * 209.99948 * 26 25 6 45 45 H 1.09002 * 109.47228 * 330.00054 * 26 25 6 46 46 H 1.08003 * 120.02649 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0062 6 6 3.3021 3.6756 0.0005 7 6 3.9863 5.0184 0.0005 8 6 4.3247 5.4097 -1.4149 9 8 4.0380 4.6712 -2.3333 10 7 4.9449 6.5808 -1.6603 11 6 5.2734 6.9615 -3.0363 12 1 4.5434 6.5564 -3.7370 13 6 5.3825 8.5030 -3.1759 14 6 6.3440 8.6789 -4.3701 15 7 7.1252 7.4390 -4.4879 16 6 8.0766 7.1824 -5.4387 17 1 8.5971 6.2361 -5.4403 18 6 8.3723 8.1388 -6.4005 19 7 7.7377 9.2919 -6.3988 20 14 9.6697 7.7885 -7.6980 21 1 10.2311 6.4307 -7.4828 22 1 9.0532 7.8617 -9.0469 23 1 10.7568 8.7950 -7.5953 24 6 6.7140 6.5172 -3.4133 25 6 4.0560 2.5169 0.0005 26 6 5.5608 2.5980 0.0005 27 6 3.4311 1.2847 0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2129 2.3203 0.0005 32 1 1.3342 4.5113 0.0110 33 1 4.9012 4.9599 0.5899 34 1 3.3214 5.7649 0.4348 35 1 5.1739 7.1717 -0.9259 36 1 5.8048 8.9431 -2.2726 37 1 4.4087 8.9399 -3.3972 38 1 5.7737 8.8459 -5.2838 39 1 7.0111 9.5215 -4.1878 40 1 7.9446 9.9602 -7.0706 41 1 6.7108 5.4893 -3.7758 42 1 7.3780 6.6156 -2.5545 43 1 5.9237 2.6175 1.0282 44 1 5.9715 1.7288 -0.5133 45 1 5.8758 3.5062 -0.5133 46 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014560433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:05 Heat of formation + Delta-G solvation = -27.024304 kcal Electronic energy + Delta-G solvation = -26239.078739 eV Core-core repulsion = 22515.561246 eV Total energy + Delta-G solvation = -3723.517493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.54595 -39.53761 -37.98764 -37.01445 -33.95787 -32.81508 -32.37672 -31.71293 -29.28465 -28.78162 -27.32812 -26.73837 -26.16638 -24.35690 -22.45994 -21.31804 -20.38492 -20.24168 -19.79396 -17.90584 -17.18178 -16.76557 -16.66884 -16.01005 -15.92834 -15.25514 -15.02179 -14.59745 -14.35522 -14.01461 -13.92179 -13.88857 -13.38494 -13.35869 -12.84473 -12.48118 -12.40793 -12.36336 -12.23809 -12.11568 -11.93736 -11.77006 -11.46663 -11.05744 -10.98692 -10.91825 -10.88884 -10.74850 -10.33605 -10.06053 -9.89464 -9.72933 -9.57236 -8.87306 -8.69999 -8.58150 -8.18112 -6.82811 -5.70547 -3.03897 1.22927 1.29483 2.84192 3.06334 3.32150 3.41757 3.47501 3.49945 3.73436 4.52513 4.56493 4.59261 4.73233 4.81499 4.87448 5.01676 5.06417 5.10942 5.17372 5.21073 5.33719 5.35001 5.45254 5.47962 5.54291 5.62419 5.64964 5.76384 5.80807 5.85350 6.00013 6.17864 6.21458 6.24985 6.34210 6.43096 6.53097 6.61715 6.64737 6.71622 7.00785 7.23058 7.54998 7.58763 7.74988 7.83717 8.25705 8.47695 9.22957 9.82877 10.47877 11.41490 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002436 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.113174 B =11493.164449 C =11945.698362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.127 3.873 4 C -0.213 4.213 5 C -0.064 4.064 6 C -0.099 4.099 7 C -0.100 4.100 8 C 0.509 3.491 9 O -0.529 6.529 10 N -0.719 5.719 11 C 0.127 3.873 12 H 0.095 0.905 13 C -0.149 4.149 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.130 3.870 25 C -0.027 4.027 26 C -0.119 4.119 27 C -0.152 4.152 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.397 0.603 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.252 0.748 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 -11.231 19.071 25.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.082 3.918 4 C -0.232 4.232 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.140 4.140 8 C 0.295 3.705 9 O -0.405 6.405 10 N -0.370 5.370 11 C 0.022 3.978 12 H 0.113 0.887 13 C -0.188 4.188 14 C 0.054 3.946 15 N -0.331 5.331 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.744 3.256 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.002 3.998 25 C -0.027 4.027 26 C -0.175 4.175 27 C -0.170 4.170 28 H 0.074 0.926 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.230 0.770 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.037 0.963 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.409 -11.857 18.197 25.525 hybrid contribution 0.434 0.398 -0.422 0.725 sum -12.974 -11.459 17.775 24.811 Atomic orbital electron populations 1.23032 0.78548 1.03763 1.01361 1.86051 1.21275 1.27148 1.88868 1.18967 0.92275 0.84014 0.96552 1.21108 0.99775 0.92285 1.10010 1.20733 0.93663 0.97055 0.96768 1.19038 0.93197 0.93368 1.04406 1.20644 1.02416 0.95612 0.95307 1.20505 0.77724 0.81350 0.90949 1.90744 1.52670 1.50933 1.46125 1.46028 1.60457 1.20871 1.09651 1.22367 0.98137 0.95558 0.81784 0.88655 1.23175 1.00808 0.93767 1.01087 1.21144 0.91225 0.89405 0.92833 1.44397 1.44152 1.13267 1.31283 1.19121 1.11611 1.00303 1.04300 0.90338 1.24810 1.00111 0.96362 0.99295 1.69956 1.44067 1.06497 1.36626 0.86020 0.80814 0.77385 0.81426 1.20476 1.21726 1.21772 1.21899 0.91639 0.94478 0.91752 1.19482 0.96000 0.91570 0.95670 1.20865 0.90753 1.03696 1.02198 1.20210 0.91257 0.98004 1.07575 0.92613 0.88379 0.92754 0.85661 0.85910 0.88004 0.88305 0.76965 0.92085 0.91736 0.93285 0.93598 0.93799 0.94004 0.96318 0.90817 0.91085 0.91026 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.50 -19.41 -0.20 -3.73 16 3 C 0.13 1.52 6.69 -39.22 -0.26 1.26 16 4 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 5 C -0.06 -0.71 9.67 -39.60 -0.38 -1.10 16 6 C -0.10 -1.17 4.37 -104.60 -0.46 -1.63 16 7 C -0.10 -1.00 5.15 -29.03 -0.15 -1.15 16 8 C 0.51 7.27 7.04 -10.99 -0.08 7.19 16 9 O -0.53 -10.06 15.67 5.56 0.09 -9.98 16 10 N -0.72 -9.87 5.21 -51.47 -0.27 -10.14 16 11 C 0.13 2.29 3.45 -65.52 -0.23 2.07 16 12 H 0.10 1.95 7.54 -51.93 -0.39 1.56 16 13 C -0.15 -2.67 6.58 -24.90 -0.16 -2.84 16 14 C 0.18 4.32 5.37 -3.07 -0.02 4.30 16 15 N -0.60 -15.73 3.40 -169.76 -0.58 -16.31 16 16 C -0.23 -6.41 10.28 -15.06 -0.15 -6.57 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.13 2.80 6.95 -2.26 -0.02 2.79 16 25 C -0.03 -0.33 5.88 -104.65 -0.62 -0.94 16 26 C -0.12 -1.24 9.21 36.01 0.33 -0.90 16 27 C -0.15 -1.84 9.64 -39.43 -0.38 -2.22 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 31 H 0.13 1.06 6.30 -52.48 -0.33 0.73 16 32 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.10 0.81 6.98 -51.93 -0.36 0.45 16 34 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 35 H 0.40 4.12 8.57 -40.82 -0.35 3.77 16 36 H 0.06 0.96 8.00 -51.93 -0.42 0.54 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 39 H 0.05 1.21 7.51 -51.93 -0.39 0.82 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 45 H 0.07 0.83 6.15 -51.93 -0.32 0.51 16 46 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 LS Contribution 373.44 15.07 5.63 5.63 Total: -1.00 -34.92 373.44 -8.90 -43.82 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.08 Total: 1.63 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.03 Total: -1.62 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.27 Total: -53.17 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.12 Total: -13.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.92 -8.90 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014560433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.796 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds