Wall clock time and date at job start Tue Mar 31 2020 12:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00321 * 2 1 4 4 C 1.38749 * 120.05600 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94781 * 179.73099 * 4 3 2 6 6 C 1.38293 * 120.04900 * 0.51228 * 5 4 3 7 7 C 1.50704 * 119.94072 * 179.72836 * 6 5 4 8 8 C 1.50699 * 109.47236 * 264.73180 * 7 6 5 9 9 O 1.21282 * 119.99968 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99807 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99806 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.91822 * 31.09777 * 11 10 8 13 13 C 1.55157 * 111.00374 * 155.00501 * 11 10 8 14 14 C 1.54321 * 103.10033 * 153.66359 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.36931 * 125.65157 * 178.90454 * 15 14 13 17 17 H 1.07998 * 120.00396 * 180.02562 * 16 15 14 18 18 C 1.38821 * 119.99902 * 0.02562 * 16 15 14 19 19 N 1.31616 * 119.99909 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47535 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47325 * 120.00134 * 20 18 16 23 23 H 1.48506 * 109.47006 * 239.99849 * 20 18 16 24 24 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 25 25 C 1.38239 * 120.11328 * 359.46137 * 6 5 4 26 26 C 1.50700 * 119.97046 * 180.26795 * 25 6 5 27 27 C 1.38163 * 120.05597 * 0.29092 * 25 6 5 28 28 H 1.08997 * 109.47064 * 59.99829 * 1 2 3 29 29 H 1.08999 * 109.47622 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47375 * 299.99993 * 1 2 3 31 31 H 1.08004 * 120.02679 * 359.97438 * 4 3 2 32 32 H 1.07995 * 119.97790 * 180.27021 * 5 4 3 33 33 H 1.08994 * 109.47115 * 144.73210 * 7 6 5 34 34 H 1.08998 * 109.46906 * 24.73052 * 7 6 5 35 35 H 0.96996 * 120.00687 * 0.02562 * 10 8 7 36 36 H 1.09002 * 110.72219 * 35.21056 * 13 11 10 37 37 H 1.09003 * 110.71618 * 272.11669 * 13 11 10 38 38 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 39 39 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 40 40 H 0.96994 * 119.99831 * 179.97438 * 19 18 16 41 41 H 1.08999 * 110.36190 * 142.96411 * 24 15 14 42 42 H 1.08999 * 110.36356 * 265.28933 * 24 15 14 43 43 H 1.09004 * 109.47064 * 90.00101 * 26 25 6 44 44 H 1.08998 * 109.47057 * 209.99948 * 26 25 6 45 45 H 1.09002 * 109.47228 * 330.00054 * 26 25 6 46 46 H 1.08003 * 120.02649 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0062 6 6 3.3021 3.6756 0.0005 7 6 3.9863 5.0184 0.0005 8 6 4.3247 5.4097 -1.4149 9 8 4.0380 4.6712 -2.3333 10 7 4.9449 6.5808 -1.6603 11 6 5.2734 6.9615 -3.0363 12 1 4.5434 6.5564 -3.7370 13 6 5.3825 8.5030 -3.1759 14 6 6.3440 8.6789 -4.3701 15 7 7.1252 7.4390 -4.4879 16 6 8.0766 7.1824 -5.4387 17 1 8.5971 6.2361 -5.4403 18 6 8.3723 8.1388 -6.4005 19 7 7.7377 9.2919 -6.3988 20 14 9.6697 7.7885 -7.6980 21 1 10.2311 6.4307 -7.4828 22 1 9.0532 7.8617 -9.0469 23 1 10.7568 8.7950 -7.5953 24 6 6.7140 6.5172 -3.4133 25 6 4.0560 2.5169 0.0005 26 6 5.5608 2.5980 0.0005 27 6 3.4311 1.2847 0.0001 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2129 2.3203 0.0005 32 1 1.3342 4.5113 0.0110 33 1 4.9012 4.9599 0.5899 34 1 3.3214 5.7649 0.4348 35 1 5.1739 7.1717 -0.9259 36 1 5.8048 8.9431 -2.2726 37 1 4.4087 8.9399 -3.3972 38 1 5.7737 8.8459 -5.2838 39 1 7.0111 9.5215 -4.1878 40 1 7.9446 9.9602 -7.0706 41 1 6.7108 5.4893 -3.7758 42 1 7.3780 6.6156 -2.5545 43 1 5.9237 2.6175 1.0282 44 1 5.9715 1.7288 -0.5133 45 1 5.8758 3.5062 -0.5133 46 1 4.0207 0.3798 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014560433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:03 Heat of formation + Delta-G solvation = -50.192895 kcal Electronic energy + Delta-G solvation = -26240.083404 eV Core-core repulsion = 22515.561246 eV Total energy + Delta-G solvation = -3724.522158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.43365 -40.64010 -39.13509 -38.37489 -35.55175 -33.88587 -33.53085 -33.02655 -31.03180 -29.72951 -28.74282 -27.45262 -27.30709 -26.21676 -23.35758 -22.44799 -22.01899 -21.61650 -21.04479 -19.01329 -18.66982 -18.01772 -17.51242 -17.32866 -16.71535 -16.63374 -16.28900 -16.06490 -15.76754 -15.24139 -15.00430 -14.69416 -14.64246 -14.21260 -14.16281 -14.07134 -13.93279 -13.70793 -13.17577 -13.05154 -12.99596 -12.88424 -12.79178 -12.67660 -12.39892 -12.24992 -12.07434 -12.00387 -11.82828 -11.79589 -11.67907 -11.56738 -10.83462 -10.73515 -10.02347 -9.70459 -9.01212 -8.92367 -7.87649 -5.23531 0.39613 0.44361 1.44632 1.45981 1.56394 1.73729 2.20335 2.38512 2.49607 2.83040 3.31035 3.69419 3.73422 3.80692 3.84230 3.96841 4.05847 4.16763 4.20640 4.24977 4.33538 4.38341 4.38876 4.44414 4.61777 4.62657 4.68844 4.74475 4.74992 4.80637 4.85852 4.88478 4.99624 5.04788 5.12639 5.21516 5.36308 5.41723 5.42751 5.58982 5.65592 5.70072 5.73397 5.86189 6.17945 6.46860 6.69649 7.08474 7.39651 7.74105 8.37332 9.22636 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022483 B = 0.002436 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.113174 B =11493.164449 C =11945.698362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.220 4.220 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.088 4.088 8 C 0.510 3.490 9 O -0.581 6.581 10 N -0.703 5.703 11 C 0.147 3.853 12 H 0.069 0.931 13 C -0.127 4.127 14 C 0.183 3.817 15 N -0.627 5.627 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.979 3.021 21 H -0.269 1.269 22 H -0.291 1.291 23 H -0.287 1.287 24 C 0.128 3.872 25 C -0.041 4.041 26 C -0.116 4.116 27 C -0.174 4.174 28 H 0.058 0.942 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.419 0.581 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.011 0.989 39 H 0.017 0.983 40 H 0.248 0.752 41 H 0.021 0.979 42 H 0.035 0.965 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 -11.092 21.244 27.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.238 4.238 5 C -0.089 4.089 6 C -0.118 4.118 7 C -0.128 4.128 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.356 5.356 11 C 0.040 3.960 12 H 0.088 0.912 13 C -0.166 4.166 14 C 0.058 3.942 15 N -0.354 5.354 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.807 3.193 21 H -0.193 1.193 22 H -0.218 1.218 23 H -0.214 1.214 24 C 0.002 3.998 25 C -0.041 4.041 26 C -0.173 4.173 27 C -0.193 4.193 28 H 0.077 0.923 29 H 0.137 0.863 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.153 0.847 35 H 0.256 0.744 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.053 0.947 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.174 -11.720 20.437 27.494 hybrid contribution 0.619 0.262 -1.086 1.277 sum -13.555 -11.457 19.351 26.258 Atomic orbital electron populations 1.23318 0.76556 1.05477 1.02155 1.86024 1.23433 1.27021 1.88806 1.19184 0.92520 0.84780 0.96623 1.21401 1.00948 0.91964 1.09501 1.21089 0.93833 0.97971 0.96056 1.19315 0.93730 0.94004 1.04722 1.20679 1.04271 0.95532 0.92274 1.21286 0.76282 0.80354 0.92259 1.90737 1.54653 1.52417 1.48182 1.45773 1.60122 1.21399 1.08296 1.21799 0.95053 0.95320 0.83850 0.91245 1.22981 1.00349 0.93726 0.99540 1.20949 0.91211 0.88028 0.94034 1.44692 1.44001 1.14822 1.31865 1.19450 1.12318 1.00339 1.05259 0.90528 1.25654 1.02370 0.96327 1.01409 1.70164 1.45301 1.07151 1.37155 0.84998 0.78217 0.77646 0.78395 1.19320 1.21836 1.21393 1.22026 0.94196 0.92680 0.90924 1.19748 0.96824 0.91842 0.95698 1.20873 0.90028 1.02851 1.03521 1.20418 0.91888 0.98423 1.08553 0.92319 0.86350 0.91362 0.83560 0.83788 0.85446 0.84699 0.74365 0.88774 0.89502 0.97097 0.96428 0.94219 0.96050 0.94721 0.88353 0.91514 0.92173 0.85139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.31 10.50 -92.39 -0.97 -8.28 16 3 C 0.11 2.68 6.69 22.51 0.15 2.83 16 4 C -0.22 -4.47 9.04 22.36 0.20 -4.27 16 5 C -0.07 -1.45 9.67 22.26 0.22 -1.23 16 6 C -0.12 -2.54 4.37 -19.85 -0.09 -2.62 16 7 C -0.09 -1.47 5.15 29.10 0.15 -1.32 16 8 C 0.51 13.45 7.04 87.66 0.62 14.07 16 9 O -0.58 -21.85 15.67 -3.03 -0.05 -21.89 16 10 N -0.70 -17.30 5.21 -435.16 -2.27 -19.56 16 11 C 0.15 5.13 3.45 46.55 0.16 5.29 16 12 H 0.07 2.84 7.54 -2.39 -0.02 2.83 16 13 C -0.13 -4.31 6.58 31.78 0.21 -4.10 16 14 C 0.18 8.97 5.37 86.73 0.47 9.44 16 15 N -0.63 -33.27 3.40 -691.01 -2.35 -35.62 16 16 C -0.24 -14.25 10.28 84.04 0.86 -13.39 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 18 C -0.06 -3.76 5.49 84.86 0.47 -3.29 16 19 N -0.95 -57.58 10.31 21.65 0.22 -57.36 16 20 Si 0.98 46.83 29.55 68.60 2.03 48.85 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 24 C 0.13 5.53 6.95 87.02 0.61 6.14 16 25 C -0.04 -0.95 5.88 -19.88 -0.12 -1.07 16 26 C -0.12 -2.30 9.21 71.24 0.66 -1.65 16 27 C -0.17 -4.23 9.64 22.37 0.22 -4.02 16 28 H 0.06 0.68 7.66 -2.39 -0.02 0.67 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.64 7.66 -2.38 -0.02 0.63 16 31 H 0.15 2.19 6.30 -2.91 -0.02 2.17 16 32 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.13 1.51 6.98 -2.39 -0.02 1.49 16 34 H 0.14 1.31 8.05 -2.39 -0.02 1.30 16 35 H 0.42 6.83 8.57 -92.71 -0.79 6.03 16 36 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 37 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.01 0.60 7.38 -2.39 -0.02 0.58 16 39 H 0.02 0.95 7.51 -2.38 -0.02 0.93 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 45 H 0.06 1.32 6.15 -2.39 -0.01 1.30 16 46 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -79.70 373.44 2.70 -77.00 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.19 Total: 14.69 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.89 Total: 2.16 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.39 Total: -112.54 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.02 Total: -30.17 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.70 2.70 -77.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014560433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.812 kcal (2) G-P(sol) polarization free energy of solvation -79.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds