Wall clock time and date at job start Tue Mar 31 2020 12:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 117.00094 * 2 1 4 4 C 1.38751 * 120.05298 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94268 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05514 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94288 * 180.02562 * 6 5 4 8 8 C 1.38242 * 120.11281 * 359.78907 * 6 5 4 9 9 C 1.38174 * 120.05538 * 0.46741 * 8 6 5 10 10 C 1.50703 * 120.02764 * 179.79108 * 9 8 6 11 11 C 1.50695 * 109.46839 * 264.72093 * 10 9 8 12 12 O 1.21283 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99863 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99960 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.64316 * 36.68333 * 14 13 11 16 16 C 1.55159 * 110.87425 * 159.93444 * 14 13 11 17 17 C 1.55129 * 101.49043 * 82.76220 * 16 14 13 18 18 N 1.47427 * 104.71812 * 37.29735 * 17 16 14 19 19 C 1.36942 * 125.64885 * 155.81713 * 18 17 16 20 20 H 1.07999 * 119.99355 * 5.51161 * 19 18 17 21 21 C 1.38806 * 119.99977 * 185.51062 * 19 18 17 22 22 N 1.31625 * 120.00252 * 7.32181 * 21 19 18 23 23 Si 1.86805 * 119.99943 * 187.31999 * 21 19 18 24 24 H 1.48491 * 109.47035 * 84.99269 * 23 21 19 25 25 H 1.48501 * 109.47201 * 204.99305 * 23 21 19 26 26 H 1.48504 * 109.46702 * 324.99256 * 23 21 19 27 27 C 1.47024 * 108.70314 * 335.55586 * 18 17 16 28 28 H 1.09001 * 109.47242 * 59.99910 * 1 2 3 29 29 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47096 * 300.00122 * 1 2 3 31 31 H 1.07998 * 120.03161 * 0.04456 * 4 3 2 32 32 H 1.07995 * 119.97230 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47322 * 90.00023 * 7 6 5 34 34 H 1.09005 * 109.46647 * 209.99712 * 7 6 5 35 35 H 1.08998 * 109.47143 * 329.99681 * 7 6 5 36 36 H 1.07997 * 119.97739 * 180.23075 * 8 6 5 37 37 H 1.09002 * 109.46848 * 144.72080 * 10 9 8 38 38 H 1.09000 * 109.46957 * 24.72111 * 10 9 8 39 39 H 0.97002 * 119.99845 * 359.97438 * 13 11 10 40 40 H 1.08998 * 111.00641 * 201.00996 * 16 14 13 41 41 H 1.09007 * 111.00105 * 324.85749 * 16 14 13 42 42 H 1.09001 * 110.49644 * 278.46202 * 17 16 14 43 43 H 1.08994 * 110.34476 * 156.06124 * 17 16 14 44 44 H 0.97000 * 119.99633 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.88611 * 120.70572 * 27 18 17 46 46 H 1.09003 * 109.88062 * 241.86708 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.0559 2.5172 0.0049 9 6 3.4311 1.2848 0.0001 10 6 4.2538 0.0221 0.0013 11 6 4.4243 -0.4675 -1.4136 12 8 3.9265 0.1479 -2.3325 13 7 5.1293 -1.5900 -1.6578 14 6 5.2956 -2.0657 -3.0334 15 1 5.4076 -1.2262 -3.7194 16 6 6.5069 -3.0292 -3.1425 17 6 5.8777 -4.3701 -2.6815 18 7 4.5123 -4.3538 -3.2373 19 6 3.7464 -5.4570 -3.5052 20 1 4.0983 -6.4392 -3.2263 21 6 2.5179 -5.3127 -4.1351 22 7 2.1526 -4.1383 -4.6039 23 14 1.3831 -6.7853 -4.3175 24 1 0.5720 -6.9409 -3.0834 25 1 0.4819 -6.5749 -5.4789 26 1 2.1934 -8.0106 -4.5352 27 6 4.1067 -2.9568 -3.4505 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3204 -0.0002 32 1 1.3340 4.5114 -0.0011 33 1 4.1506 5.3426 1.0271 34 1 4.9442 4.9381 -0.5140 35 1 3.3582 5.7462 -0.5148 36 1 5.1343 2.5752 0.0091 37 1 3.7467 -0.7413 0.5914 38 1 5.2324 0.2265 0.4356 39 1 5.5272 -2.0824 -0.9229 40 1 6.8633 -3.0939 -4.1705 41 1 7.3097 -2.7251 -2.4708 42 1 5.8436 -4.4215 -1.5932 43 1 6.4413 -5.2115 -3.0845 44 1 1.2943 -4.0376 -5.0444 45 1 3.8733 -2.7949 -4.5028 46 1 3.2366 -2.7255 -2.8359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015151885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:12 Heat of formation + Delta-G solvation = -26.092029 kcal Electronic energy + Delta-G solvation = -27046.192691 eV Core-core repulsion = 23322.715625 eV Total energy + Delta-G solvation = -3723.477066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.39159 -39.12982 -37.61862 -37.03527 -33.57930 -33.18350 -31.85103 -31.55621 -29.06729 -27.95827 -27.82095 -26.91721 -25.80966 -24.37352 -22.24275 -21.30525 -20.19694 -20.01902 -19.61874 -17.93048 -16.93439 -16.54293 -16.44428 -15.79556 -15.52729 -14.97752 -14.71294 -14.41417 -14.24419 -13.85654 -13.79711 -13.75379 -13.66675 -13.13621 -12.99594 -12.47849 -12.31160 -12.08770 -12.05787 -11.83820 -11.67640 -11.50626 -11.27306 -11.01509 -10.81248 -10.77887 -10.76787 -10.44334 -10.39544 -10.25081 -9.95866 -9.66451 -9.37884 -8.78397 -8.57928 -8.35811 -7.91659 -6.76558 -5.62240 -3.00067 1.34008 1.47520 3.18648 3.39137 3.43152 3.47492 3.49971 3.57457 3.95654 4.54725 4.67268 4.77727 4.86536 5.05508 5.20142 5.22423 5.24653 5.28850 5.31582 5.45896 5.51010 5.52232 5.53745 5.57580 5.59864 5.63749 5.70767 5.81943 5.85759 5.89556 6.09575 6.18084 6.33087 6.42702 6.45896 6.56335 6.60327 6.64519 6.75128 6.83487 7.03162 7.48333 7.61940 7.73751 7.88136 8.08535 8.33379 8.80138 9.26692 9.88400 10.54221 11.45967 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015443 B = 0.003569 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.664225 B = 7843.191556 C = 9109.612039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.143 3.857 4 C -0.206 4.206 5 C -0.083 4.083 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.071 4.071 9 C -0.089 4.089 10 C -0.094 4.094 11 C 0.516 3.484 12 O -0.532 6.532 13 N -0.715 5.715 14 C 0.116 3.884 15 H 0.085 0.915 16 C -0.139 4.139 17 C 0.132 3.868 18 N -0.604 5.604 19 C -0.231 4.231 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.915 5.915 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.169 3.831 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.394 0.606 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.040 0.960 44 H 0.252 0.748 45 H 0.068 0.932 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 14.915 12.964 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.221 6.221 3 C 0.097 3.903 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.130 4.130 7 C -0.163 4.163 8 C -0.089 4.089 9 C -0.090 4.090 10 C -0.134 4.134 11 C 0.302 3.698 12 O -0.409 6.409 13 N -0.366 5.366 14 C 0.011 3.989 15 H 0.103 0.897 16 C -0.178 4.178 17 C 0.006 3.994 18 N -0.331 5.331 19 C -0.359 4.359 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.044 3.956 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.227 0.773 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 3.313 15.110 12.155 19.673 hybrid contribution -0.888 -0.967 0.205 1.329 sum 2.425 14.143 12.360 18.939 Atomic orbital electron populations 1.23046 0.78418 1.04196 1.00875 1.86126 1.21319 1.26519 1.88110 1.18805 0.91744 0.84423 0.95351 1.21154 0.99873 0.92298 1.09155 1.20735 0.93899 0.96798 0.98665 1.19702 0.93618 0.95290 1.04342 1.20680 1.00288 0.93523 1.01766 1.20669 0.99412 0.90536 0.98244 1.18614 0.90297 0.94553 1.05505 1.20485 1.00765 0.96296 0.95868 1.20312 0.78234 0.80579 0.90689 1.90706 1.47065 1.56987 1.46095 1.45976 1.54821 1.26338 1.09496 1.22354 0.97577 0.96724 0.82198 0.89702 1.23072 0.96103 0.96790 1.01836 1.21613 0.87461 0.94753 0.95591 1.44506 1.11469 1.02450 1.74701 1.19004 0.98588 0.85944 1.32412 0.90565 1.24829 0.98453 0.96946 1.00218 1.69965 1.21842 1.21707 1.42662 0.86169 0.80844 0.81732 0.77188 1.21675 1.21744 1.20765 1.21597 0.91574 0.81686 1.00776 0.92608 0.88096 0.93022 0.85591 0.86146 0.91707 0.91753 0.91892 0.85677 0.87855 0.88535 0.77319 0.90289 0.91735 0.96672 0.94160 0.93757 0.91426 0.94718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -4.97 9.63 -19.44 -0.19 -5.16 16 3 C 0.14 2.19 6.66 -39.22 -0.26 1.93 16 4 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 5 C -0.08 -0.98 9.69 -39.60 -0.38 -1.36 16 6 C -0.13 -1.52 5.88 -104.60 -0.62 -2.14 16 7 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 8 C -0.07 -0.90 9.33 -39.60 -0.37 -1.27 16 9 C -0.09 -1.30 4.39 -104.47 -0.46 -1.76 16 10 C -0.09 -1.30 5.55 -29.04 -0.16 -1.46 16 11 C 0.52 9.28 7.82 -10.99 -0.09 9.19 16 12 O -0.53 -11.92 15.76 5.55 0.09 -11.83 16 13 N -0.72 -12.21 5.12 -52.03 -0.27 -12.48 16 14 C 0.12 2.30 3.24 -66.10 -0.21 2.09 16 15 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 16 C -0.14 -2.37 6.66 -24.46 -0.16 -2.54 16 17 C 0.13 2.67 7.22 -2.41 -0.02 2.66 16 18 N -0.60 -15.68 3.39 -169.93 -0.58 -16.26 16 19 C -0.23 -6.57 10.26 -15.06 -0.15 -6.72 16 20 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.22 5.45 -17.43 -0.09 -0.32 16 22 N -0.91 -27.97 10.46 55.49 0.58 -27.39 16 23 Si 0.91 22.60 29.56 -169.99 -5.02 17.57 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C 0.17 4.33 5.18 -3.06 -0.02 4.32 16 28 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 32 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.10 1.38 7.69 -51.93 -0.40 0.98 16 38 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 39 H 0.39 5.58 8.62 -40.82 -0.35 5.23 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.97 6.88 -51.93 -0.36 1.62 16 46 H 0.03 1.02 7.88 -51.93 -0.41 0.61 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -35.86 377.18 -8.93 -44.79 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.23 Total: 4.70 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.00 Total: 0.37 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -0.26 Total: -56.13 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.10 Total: -16.99 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.86 -8.93 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015151885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.701 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds