Wall clock time and date at job start Tue Mar 31 2020 12:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35906 * 117.00094 * 2 1 4 4 C 1.38751 * 120.05298 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94268 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05514 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.94288 * 180.02562 * 6 5 4 8 8 C 1.38242 * 120.11281 * 359.78907 * 6 5 4 9 9 C 1.38174 * 120.05538 * 0.46741 * 8 6 5 10 10 C 1.50703 * 120.02764 * 179.79108 * 9 8 6 11 11 C 1.50695 * 109.46839 * 264.72093 * 10 9 8 12 12 O 1.21283 * 120.00305 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99863 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99960 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.64316 * 36.68333 * 14 13 11 16 16 C 1.55159 * 110.87425 * 159.93444 * 14 13 11 17 17 C 1.55129 * 101.49043 * 82.76220 * 16 14 13 18 18 N 1.47427 * 104.71812 * 37.29735 * 17 16 14 19 19 C 1.36942 * 125.64885 * 155.81713 * 18 17 16 20 20 H 1.07999 * 119.99355 * 5.51161 * 19 18 17 21 21 C 1.38806 * 119.99977 * 185.51062 * 19 18 17 22 22 N 1.31625 * 120.00252 * 7.32181 * 21 19 18 23 23 Si 1.86805 * 119.99943 * 187.31999 * 21 19 18 24 24 H 1.48491 * 109.47035 * 84.99269 * 23 21 19 25 25 H 1.48501 * 109.47201 * 204.99305 * 23 21 19 26 26 H 1.48504 * 109.46702 * 324.99256 * 23 21 19 27 27 C 1.47024 * 108.70314 * 335.55586 * 18 17 16 28 28 H 1.09001 * 109.47242 * 59.99910 * 1 2 3 29 29 H 1.08998 * 109.47255 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47096 * 300.00122 * 1 2 3 31 31 H 1.07998 * 120.03161 * 0.04456 * 4 3 2 32 32 H 1.07995 * 119.97230 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47322 * 90.00023 * 7 6 5 34 34 H 1.09005 * 109.46647 * 209.99712 * 7 6 5 35 35 H 1.08998 * 109.47143 * 329.99681 * 7 6 5 36 36 H 1.07997 * 119.97739 * 180.23075 * 8 6 5 37 37 H 1.09002 * 109.46848 * 144.72080 * 10 9 8 38 38 H 1.09000 * 109.46957 * 24.72111 * 10 9 8 39 39 H 0.97002 * 119.99845 * 359.97438 * 13 11 10 40 40 H 1.08998 * 111.00641 * 201.00996 * 16 14 13 41 41 H 1.09007 * 111.00105 * 324.85749 * 16 14 13 42 42 H 1.09001 * 110.49644 * 278.46202 * 17 16 14 43 43 H 1.08994 * 110.34476 * 156.06124 * 17 16 14 44 44 H 0.97000 * 119.99633 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.88611 * 120.70572 * 27 18 17 46 46 H 1.09003 * 109.88062 * 241.86708 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3019 3.6758 -0.0005 7 6 3.9860 5.0186 -0.0005 8 6 4.0559 2.5172 0.0049 9 6 3.4311 1.2848 0.0001 10 6 4.2538 0.0221 0.0013 11 6 4.4243 -0.4675 -1.4136 12 8 3.9265 0.1479 -2.3325 13 7 5.1293 -1.5900 -1.6578 14 6 5.2956 -2.0657 -3.0334 15 1 5.4076 -1.2262 -3.7194 16 6 6.5069 -3.0292 -3.1425 17 6 5.8777 -4.3701 -2.6815 18 7 4.5123 -4.3538 -3.2373 19 6 3.7464 -5.4570 -3.5052 20 1 4.0983 -6.4392 -3.2263 21 6 2.5179 -5.3127 -4.1351 22 7 2.1526 -4.1383 -4.6039 23 14 1.3831 -6.7853 -4.3175 24 1 0.5720 -6.9409 -3.0834 25 1 0.4819 -6.5749 -5.4789 26 1 2.1934 -8.0106 -4.5352 27 6 4.1067 -2.9568 -3.4505 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3204 -0.0002 32 1 1.3340 4.5114 -0.0011 33 1 4.1506 5.3426 1.0271 34 1 4.9442 4.9381 -0.5140 35 1 3.3582 5.7462 -0.5148 36 1 5.1343 2.5752 0.0091 37 1 3.7467 -0.7413 0.5914 38 1 5.2324 0.2265 0.4356 39 1 5.5272 -2.0824 -0.9229 40 1 6.8633 -3.0939 -4.1705 41 1 7.3097 -2.7251 -2.4708 42 1 5.8436 -4.4215 -1.5932 43 1 6.4413 -5.2115 -3.0845 44 1 1.2943 -4.0376 -5.0444 45 1 3.8733 -2.7949 -4.5028 46 1 3.2366 -2.7255 -2.8359 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015151885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:10 Heat of formation + Delta-G solvation = -50.387289 kcal Electronic energy + Delta-G solvation = -27047.246213 eV Core-core repulsion = 23322.715625 eV Total energy + Delta-G solvation = -3724.530588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48505 -40.56215 -38.86191 -38.49197 -35.37730 -34.27074 -33.65924 -32.48984 -30.84629 -29.44868 -28.77069 -28.40253 -26.71228 -26.35532 -23.33858 -22.47349 -22.00164 -21.39116 -21.09913 -18.96739 -18.87202 -18.03681 -17.48455 -17.35264 -16.69356 -16.55926 -15.99715 -15.90106 -15.62961 -15.24601 -15.21110 -14.76332 -14.70789 -14.34507 -14.29192 -14.02825 -13.83588 -13.34547 -13.19907 -13.02593 -12.97255 -12.85976 -12.71567 -12.65333 -12.24265 -12.20537 -12.12189 -11.91613 -11.88947 -11.75865 -11.72584 -11.67767 -10.87482 -10.74444 -9.95483 -9.77835 -8.90767 -8.89599 -7.81981 -5.22555 0.36457 0.50087 1.42439 1.45786 1.53926 1.77536 2.31943 2.40661 2.49041 2.86719 3.33141 3.64974 3.69093 3.84315 3.87176 3.99541 4.10331 4.12703 4.17548 4.30195 4.32714 4.34986 4.41522 4.47463 4.59931 4.62980 4.67150 4.75317 4.79718 4.80219 4.92664 5.00718 5.07465 5.12609 5.18594 5.24801 5.38633 5.40553 5.47320 5.49484 5.69437 5.70734 5.79333 5.93264 6.19217 6.46991 6.70739 7.07045 7.42420 7.77947 8.42139 9.24568 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015443 B = 0.003569 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.664225 B = 7843.191556 C = 9109.612039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.109 3.891 4 C -0.216 4.216 5 C -0.088 4.088 6 C -0.133 4.133 7 C -0.104 4.104 8 C -0.079 4.079 9 C -0.114 4.114 10 C -0.083 4.083 11 C 0.512 3.488 12 O -0.583 6.583 13 N -0.704 5.704 14 C 0.129 3.871 15 H 0.076 0.924 16 C -0.117 4.117 17 C 0.124 3.876 18 N -0.625 5.625 19 C -0.240 4.240 20 H 0.088 0.912 21 C -0.073 4.073 22 N -0.951 5.951 23 Si 0.979 3.021 24 H -0.287 1.287 25 H -0.298 1.298 26 H -0.263 1.263 27 C 0.185 3.815 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.412 0.588 40 H 0.082 0.918 41 H 0.115 0.885 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.242 0.758 45 H 0.018 0.982 46 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.895 15.459 14.898 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.254 6.254 3 C 0.064 3.936 4 C -0.234 4.234 5 C -0.106 4.106 6 C -0.133 4.133 7 C -0.160 4.160 8 C -0.097 4.097 9 C -0.115 4.115 10 C -0.122 4.122 11 C 0.300 3.700 12 O -0.463 6.463 13 N -0.356 5.356 14 C 0.023 3.977 15 H 0.094 0.906 16 C -0.155 4.155 17 C 0.000 4.000 18 N -0.352 5.352 19 C -0.369 4.369 20 H 0.105 0.895 21 C -0.266 4.266 22 N -0.601 5.601 23 Si 0.807 3.193 24 H -0.214 1.214 25 H -0.225 1.225 26 H -0.188 1.188 27 C 0.059 3.941 28 H 0.070 0.930 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.165 0.835 37 H 0.123 0.877 38 H 0.158 0.842 39 H 0.248 0.752 40 H 0.100 0.900 41 H 0.133 0.867 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.037 0.963 46 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges 5.463 15.623 14.145 21.772 hybrid contribution -1.532 -1.099 -0.375 1.922 sum 3.931 14.524 13.771 20.397 Atomic orbital electron populations 1.23201 0.77145 1.04677 1.02007 1.86055 1.22971 1.27704 1.88671 1.19196 0.92590 0.84734 0.97058 1.21431 1.00732 0.92325 1.08951 1.21133 0.94497 0.97246 0.97730 1.20167 0.93846 0.96546 1.02770 1.20735 1.00356 0.91801 1.03119 1.21008 1.00680 0.90197 0.97775 1.18918 0.90415 0.95596 1.06564 1.20484 1.03014 0.96055 0.92682 1.21140 0.76816 0.80055 0.92027 1.90681 1.48914 1.58586 1.48107 1.45808 1.54652 1.26253 1.08874 1.21954 0.96302 0.95855 0.83628 0.90625 1.23013 0.95684 0.93509 1.03329 1.21911 0.84719 0.96928 0.96480 1.44810 1.13828 1.01793 1.74788 1.19488 0.98981 0.87233 1.31197 0.89452 1.25750 1.00362 0.99704 1.00741 1.70250 1.21676 1.24064 1.44061 0.85087 0.78635 0.78973 0.76624 1.21406 1.22468 1.18756 1.21180 0.92530 0.83371 0.97022 0.93009 0.88013 0.90278 0.84230 0.83467 0.89943 0.91209 0.90910 0.83536 0.87737 0.84229 0.75184 0.89984 0.86672 0.94503 0.93166 0.94833 0.96343 0.99888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.34 -11.52 9.63 -92.49 -0.89 -12.41 16 3 C 0.11 3.43 6.66 22.51 0.15 3.58 16 4 C -0.22 -5.63 9.04 22.37 0.20 -5.43 16 5 C -0.09 -1.96 9.69 22.25 0.22 -1.74 16 6 C -0.13 -2.89 5.88 -19.85 -0.12 -3.00 16 7 C -0.10 -1.48 10.01 71.24 0.71 -0.77 16 8 C -0.08 -1.90 9.33 22.26 0.21 -1.69 16 9 C -0.11 -3.31 4.39 -19.77 -0.09 -3.40 16 10 C -0.08 -2.20 5.55 29.10 0.16 -2.04 16 11 C 0.51 18.44 7.82 87.66 0.69 19.13 16 12 O -0.58 -27.13 15.76 -3.04 -0.05 -27.18 16 13 N -0.70 -23.37 5.12 -436.93 -2.24 -25.61 16 14 C 0.13 5.09 3.24 46.18 0.15 5.24 16 15 H 0.08 3.16 7.69 -2.39 -0.02 3.14 16 16 C -0.12 -3.66 6.66 32.06 0.21 -3.44 16 17 C 0.12 4.75 7.22 86.93 0.63 5.37 16 18 N -0.63 -32.81 3.39 -691.54 -2.35 -35.16 16 19 C -0.24 -13.79 10.26 84.03 0.86 -12.93 16 20 H 0.09 4.70 7.84 -2.91 -0.02 4.68 16 21 C -0.07 -4.34 5.45 84.86 0.46 -3.88 16 22 N -0.95 -61.40 10.46 21.65 0.23 -61.17 16 23 Si 0.98 47.54 29.56 68.60 2.03 49.56 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.19 9.96 5.18 86.73 0.45 10.41 16 28 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 29 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.08 1.51 7.66 -2.39 -0.02 1.49 16 31 H 0.14 3.04 6.30 -2.91 -0.02 3.03 16 32 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 0.94 8.09 -2.38 -0.02 0.92 16 35 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 36 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.10 2.75 7.69 -2.39 -0.02 2.73 16 38 H 0.14 2.40 8.05 -2.39 -0.02 2.38 16 39 H 0.41 10.60 8.62 -92.71 -0.80 9.80 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 41 H 0.12 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 45 H 0.02 1.16 6.88 -2.39 -0.02 1.14 16 46 H -0.02 -1.08 7.88 -2.39 -0.02 -1.09 16 Total: -1.00 -84.32 377.18 2.92 -81.39 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.18 Total: 23.43 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.01 Total: 7.14 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -4.36 Total: -121.94 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.94 Total: -39.59 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -84.32 2.92 -81.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015151885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.007 kcal (2) G-P(sol) polarization free energy of solvation -84.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds