Wall clock time and date at job start Tue Mar 31 2020 12:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99924 * 2 1 4 4 C 1.38753 * 120.05329 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94518 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05364 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94441 * 180.02562 * 6 5 4 8 8 C 1.38245 * 120.11053 * 359.79000 * 6 5 4 9 9 C 1.38171 * 120.05579 * 0.45666 * 8 6 5 10 10 C 1.50692 * 120.02847 * 179.79069 * 9 8 6 11 11 C 1.50699 * 109.47782 * 264.73071 * 10 9 8 12 12 O 1.21286 * 119.99670 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00534 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00272 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.91386 * 328.90214 * 14 13 11 16 16 C 1.55157 * 111.00680 * 204.99847 * 14 13 11 17 17 C 1.54321 * 103.10033 * 277.51720 * 16 14 13 18 18 N 1.47019 * 107.27531 * 337.71659 * 17 16 14 19 19 C 1.36931 * 125.65157 * 178.90454 * 18 17 16 20 20 H 1.07998 * 120.00396 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99902 * 0.02562 * 19 18 17 22 22 N 1.31616 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47535 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47325 * 120.00134 * 23 21 19 26 26 H 1.48506 * 109.47006 * 239.99849 * 23 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 18 17 16 28 28 H 1.08999 * 109.47759 * 59.99648 * 1 2 3 29 29 H 1.09002 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46731 * 299.99050 * 1 2 3 31 31 H 1.07997 * 120.03253 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.97624 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47261 * 89.99858 * 7 6 5 34 34 H 1.08998 * 109.47453 * 210.00379 * 7 6 5 35 35 H 1.09003 * 109.47163 * 329.99963 * 7 6 5 36 36 H 1.07995 * 119.97440 * 180.23509 * 8 6 5 37 37 H 1.09002 * 109.47056 * 144.72704 * 10 9 8 38 38 H 1.09007 * 109.46945 * 24.73213 * 10 9 8 39 39 H 0.97001 * 119.99350 * 359.97438 * 13 11 10 40 40 H 1.09002 * 110.72219 * 159.06416 * 16 14 13 41 41 H 1.09003 * 110.71618 * 35.97029 * 16 14 13 42 42 H 1.09001 * 109.88480 * 97.13771 * 17 16 14 43 43 H 1.09004 * 109.87910 * 218.29695 * 17 16 14 44 44 H 0.96994 * 119.99831 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36190 * 142.96411 * 27 18 17 46 46 H 1.08999 * 110.36356 * 265.28933 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0186 -0.0005 8 6 4.0559 2.5172 0.0049 9 6 3.4311 1.2849 0.0003 10 6 4.2537 0.0223 0.0015 11 6 4.4244 -0.4676 -1.4134 12 8 3.9266 0.1478 -2.3323 13 7 5.1293 -1.5900 -1.6576 14 6 5.2948 -2.0664 -3.0330 15 1 4.4299 -1.8040 -3.6423 16 6 5.5538 -3.5959 -3.0644 17 6 7.0678 -3.7000 -2.7843 18 7 7.6686 -2.4077 -3.1456 19 6 8.9931 -2.0819 -3.0254 20 1 9.3368 -1.1012 -3.3193 21 6 9.8942 -3.0122 -2.5257 22 7 9.4753 -4.2073 -2.1670 23 14 11.7009 -2.5674 -2.3610 24 1 11.9124 -1.1740 -2.8286 25 1 12.1109 -2.6802 -0.9382 26 1 12.5162 -3.4949 -3.1860 27 6 6.6085 -1.5204 -3.6579 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2128 2.3203 -0.0014 32 1 1.3338 4.5114 -0.0019 33 1 4.1504 5.3426 1.0271 34 1 4.9440 4.9383 -0.5140 35 1 3.3581 5.7463 -0.5148 36 1 5.1343 2.5753 0.0092 37 1 3.7467 -0.7411 0.5916 38 1 5.2324 0.2267 0.4358 39 1 5.5272 -2.0823 -0.9226 40 1 5.3138 -4.0077 -4.0447 41 1 4.9819 -4.1000 -2.2854 42 1 7.2360 -3.9044 -1.7269 43 1 7.5033 -4.4939 -3.3912 44 1 10.1049 -4.8574 -1.8182 45 1 6.7839 -0.4943 -3.3349 46 1 6.5618 -1.5740 -4.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015151888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:15 Heat of formation + Delta-G solvation = -28.437618 kcal Electronic energy + Delta-G solvation = -26778.203694 eV Core-core repulsion = 23054.624915 eV Total energy + Delta-G solvation = -3723.578779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.49854 -39.20906 -37.73704 -37.08266 -33.61674 -33.25415 -31.80544 -31.56831 -29.23875 -28.15946 -27.97231 -26.80207 -25.90293 -24.40170 -22.32640 -21.38755 -20.21751 -19.97770 -19.63297 -18.06513 -17.05872 -16.59652 -16.55041 -15.81782 -15.65895 -15.08797 -14.64997 -14.57666 -14.36865 -13.94081 -13.84513 -13.78020 -13.66810 -13.15300 -13.00571 -12.62187 -12.29007 -12.19425 -12.04722 -11.90237 -11.80628 -11.74833 -11.32820 -10.95325 -10.93203 -10.89912 -10.85826 -10.63790 -10.30545 -10.08907 -9.91304 -9.65876 -9.48307 -8.84846 -8.67684 -8.43845 -8.01945 -6.79749 -5.70697 -3.02950 1.27382 1.39253 3.08305 3.21011 3.39999 3.46356 3.48403 3.50054 3.88847 4.51390 4.60386 4.70908 4.80495 4.89884 4.99601 5.15124 5.20698 5.22998 5.29460 5.35177 5.41068 5.49588 5.49939 5.53421 5.55040 5.59330 5.70387 5.82151 5.83648 5.89320 6.03908 6.24484 6.26895 6.35170 6.43110 6.54310 6.56342 6.60045 6.73590 6.75716 7.14863 7.33081 7.56033 7.59021 7.81519 8.02269 8.26518 8.69720 9.23746 9.83751 10.50087 11.41311 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003171 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.360996 B = 8827.138265 C = 9967.613282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.137 3.863 4 C -0.206 4.206 5 C -0.084 4.084 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.069 4.069 9 C -0.085 4.085 10 C -0.096 4.096 11 C 0.519 3.481 12 O -0.544 6.544 13 N -0.706 5.706 14 C 0.129 3.871 15 H 0.088 0.912 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.910 3.090 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.126 3.874 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.402 0.598 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.251 0.749 45 H 0.041 0.959 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.952 10.969 7.620 22.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.092 3.908 4 C -0.225 4.225 5 C -0.103 4.103 6 C -0.124 4.124 7 C -0.165 4.165 8 C -0.087 4.087 9 C -0.086 4.086 10 C -0.136 4.136 11 C 0.305 3.695 12 O -0.422 6.422 13 N -0.356 5.356 14 C 0.023 3.977 15 H 0.106 0.894 16 C -0.193 4.193 17 C 0.052 3.948 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.741 3.259 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.002 4.002 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.236 0.764 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -18.025 11.107 7.013 22.304 hybrid contribution 0.947 -0.034 0.387 1.024 sum -17.078 11.074 7.400 21.658 Atomic orbital electron populations 1.23020 0.78705 1.03805 1.01068 1.86075 1.21061 1.26875 1.88536 1.18738 0.91635 0.84184 0.96263 1.21116 0.99701 0.92313 1.09353 1.20744 0.93907 0.96813 0.98786 1.19747 0.93592 0.95400 1.03708 1.20702 1.00449 0.93391 1.01936 1.20769 0.99784 0.90530 0.97646 1.18627 0.90176 0.94651 1.05142 1.20494 1.01253 0.96120 0.95726 1.20345 0.77955 0.80489 0.90739 1.90668 1.48954 1.56341 1.46214 1.45812 1.53624 1.26626 1.09567 1.22174 0.98264 0.94601 0.82631 0.89378 1.23216 1.00657 0.93939 1.01460 1.21162 0.85493 0.88494 0.99692 1.44484 1.03402 1.10403 1.74805 1.19108 0.81955 0.98194 1.35866 0.90529 1.24774 0.98098 0.96131 1.01556 1.69962 1.32867 1.05011 1.49308 0.86057 0.85043 0.77472 0.77291 1.20571 1.21818 1.21825 1.22021 0.87804 0.94608 0.95722 0.92753 0.88373 0.92896 0.85679 0.86106 0.91564 0.91540 0.91862 0.85379 0.87910 0.88022 0.76362 0.91141 0.91662 0.93605 0.93858 0.93896 0.94046 0.95625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.03 9.63 -19.43 -0.19 -4.22 16 3 C 0.14 1.85 6.66 -39.22 -0.26 1.59 16 4 C -0.21 -2.37 9.04 -39.43 -0.36 -2.73 16 5 C -0.08 -0.92 9.69 -39.60 -0.38 -1.30 16 6 C -0.12 -1.44 5.88 -104.60 -0.62 -2.05 16 7 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 8 C -0.07 -0.90 9.33 -39.60 -0.37 -1.27 16 9 C -0.08 -1.19 4.39 -104.48 -0.46 -1.65 16 10 C -0.10 -1.30 5.55 -29.04 -0.16 -1.46 16 11 C 0.52 8.85 7.82 -10.99 -0.09 8.76 16 12 O -0.54 -11.11 15.68 5.55 0.09 -11.02 16 13 N -0.71 -12.04 5.19 -51.48 -0.27 -12.31 16 14 C 0.13 2.40 3.46 -65.52 -0.23 2.17 16 15 H 0.09 1.63 7.54 -51.93 -0.39 1.23 16 16 C -0.15 -2.80 6.53 -24.90 -0.16 -2.97 16 17 C 0.18 4.15 5.36 -3.07 -0.02 4.13 16 18 N -0.60 -15.33 3.40 -169.76 -0.58 -15.91 16 19 C -0.22 -6.22 10.28 -15.06 -0.15 -6.37 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.72 10.31 55.49 0.57 -26.14 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.13 2.75 6.95 -2.26 -0.02 2.73 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.10 1.24 7.69 -51.93 -0.40 0.84 16 38 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 39 H 0.40 6.45 8.67 -40.82 -0.35 6.09 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.17 7.38 -51.93 -0.38 0.78 16 43 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -33.70 377.08 -8.95 -42.65 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.23 Total: 4.32 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: -2.01 Total: -0.13 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.27 Total: -54.36 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.10 Total: -15.24 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.70 -8.95 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015151888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.213 kcal (2) G-P(sol) polarization free energy of solvation -33.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds