Wall clock time and date at job start Tue Mar 31 2020 12:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35900 * 116.99924 * 2 1 4 4 C 1.38753 * 120.05329 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94518 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05364 * 359.97438 * 5 4 3 7 7 C 1.50693 * 119.94441 * 180.02562 * 6 5 4 8 8 C 1.38245 * 120.11053 * 359.79000 * 6 5 4 9 9 C 1.38171 * 120.05579 * 0.45666 * 8 6 5 10 10 C 1.50692 * 120.02847 * 179.79069 * 9 8 6 11 11 C 1.50699 * 109.47782 * 264.73071 * 10 9 8 12 12 O 1.21286 * 119.99670 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00534 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00272 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.91386 * 328.90214 * 14 13 11 16 16 C 1.55157 * 111.00680 * 204.99847 * 14 13 11 17 17 C 1.54321 * 103.10033 * 277.51720 * 16 14 13 18 18 N 1.47019 * 107.27531 * 337.71659 * 17 16 14 19 19 C 1.36931 * 125.65157 * 178.90454 * 18 17 16 20 20 H 1.07998 * 120.00396 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99902 * 0.02562 * 19 18 17 22 22 N 1.31616 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47535 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47325 * 120.00134 * 23 21 19 26 26 H 1.48506 * 109.47006 * 239.99849 * 23 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 18 17 16 28 28 H 1.08999 * 109.47759 * 59.99648 * 1 2 3 29 29 H 1.09002 * 109.46709 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46731 * 299.99050 * 1 2 3 31 31 H 1.07997 * 120.03253 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.97624 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47261 * 89.99858 * 7 6 5 34 34 H 1.08998 * 109.47453 * 210.00379 * 7 6 5 35 35 H 1.09003 * 109.47163 * 329.99963 * 7 6 5 36 36 H 1.07995 * 119.97440 * 180.23509 * 8 6 5 37 37 H 1.09002 * 109.47056 * 144.72704 * 10 9 8 38 38 H 1.09007 * 109.46945 * 24.73213 * 10 9 8 39 39 H 0.97001 * 119.99350 * 359.97438 * 13 11 10 40 40 H 1.09002 * 110.72219 * 159.06416 * 16 14 13 41 41 H 1.09003 * 110.71618 * 35.97029 * 16 14 13 42 42 H 1.09001 * 109.88480 * 97.13771 * 17 16 14 43 43 H 1.09004 * 109.87910 * 218.29695 * 17 16 14 44 44 H 0.96994 * 119.99831 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36190 * 142.96411 * 27 18 17 46 46 H 1.08999 * 110.36356 * 265.28933 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9207 3.6048 -0.0011 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0186 -0.0005 8 6 4.0559 2.5172 0.0049 9 6 3.4311 1.2849 0.0003 10 6 4.2537 0.0223 0.0015 11 6 4.4244 -0.4676 -1.4134 12 8 3.9266 0.1478 -2.3323 13 7 5.1293 -1.5900 -1.6576 14 6 5.2948 -2.0664 -3.0330 15 1 4.4299 -1.8040 -3.6423 16 6 5.5538 -3.5959 -3.0644 17 6 7.0678 -3.7000 -2.7843 18 7 7.6686 -2.4077 -3.1456 19 6 8.9931 -2.0819 -3.0254 20 1 9.3368 -1.1012 -3.3193 21 6 9.8942 -3.0122 -2.5257 22 7 9.4753 -4.2073 -2.1670 23 14 11.7009 -2.5674 -2.3610 24 1 11.9124 -1.1740 -2.8286 25 1 12.1109 -2.6802 -0.9382 26 1 12.5162 -3.4949 -3.1860 27 6 6.6085 -1.5204 -3.6579 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2128 2.3203 -0.0014 32 1 1.3338 4.5114 -0.0019 33 1 4.1504 5.3426 1.0271 34 1 4.9440 4.9383 -0.5140 35 1 3.3581 5.7463 -0.5148 36 1 5.1343 2.5753 0.0092 37 1 3.7467 -0.7411 0.5916 38 1 5.2324 0.2267 0.4358 39 1 5.5272 -2.0823 -0.9226 40 1 5.3138 -4.0077 -4.0447 41 1 4.9819 -4.1000 -2.2854 42 1 7.2360 -3.9044 -1.7269 43 1 7.5033 -4.4939 -3.3912 44 1 10.1049 -4.8574 -1.8182 45 1 6.7839 -0.4943 -3.3349 46 1 6.5618 -1.5740 -4.7456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015151888.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:13 Heat of formation + Delta-G solvation = -49.453025 kcal Electronic energy + Delta-G solvation = -26779.114990 eV Core-core repulsion = 23054.624915 eV Total energy + Delta-G solvation = -3724.490075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.47737 -40.54757 -38.85603 -38.47847 -35.35906 -34.27428 -33.51529 -32.47507 -31.05035 -29.48539 -28.70702 -28.29349 -26.70025 -26.35265 -23.35263 -22.47013 -21.94462 -21.37659 -21.03999 -19.01287 -18.83477 -18.03279 -17.47681 -17.24132 -16.66083 -16.54041 -16.15859 -15.80287 -15.61394 -15.26338 -15.21206 -14.76681 -14.71156 -14.35923 -14.11657 -14.03190 -13.82615 -13.56220 -13.20904 -12.96388 -12.89962 -12.86011 -12.81195 -12.65111 -12.26506 -12.21967 -12.08231 -11.98528 -11.81374 -11.72669 -11.68218 -11.58428 -10.87208 -10.72068 -10.00673 -9.78076 -8.89866 -8.85705 -7.84561 -5.18844 0.36505 0.50279 1.46427 1.47067 1.57315 1.73900 2.29966 2.43177 2.49724 2.85945 3.34467 3.67694 3.68650 3.79844 3.85840 4.01637 4.08067 4.09797 4.24001 4.32574 4.33721 4.40475 4.45406 4.46975 4.59090 4.67786 4.70142 4.75397 4.77652 4.80727 4.88720 4.90332 5.00910 5.04267 5.13069 5.21472 5.38580 5.45062 5.46486 5.61910 5.69242 5.70532 5.77568 5.91758 6.20366 6.49199 6.66792 7.12336 7.34211 7.77512 8.42261 9.25626 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016150 B = 0.003171 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.360996 B = 8827.138265 C = 9967.613282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.088 4.088 9 C -0.111 4.111 10 C -0.088 4.088 11 C 0.519 3.481 12 O -0.579 6.579 13 N -0.704 5.704 14 C 0.142 3.858 15 H 0.097 0.903 16 C -0.134 4.134 17 C 0.185 3.815 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.975 3.025 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.124 3.876 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.408 0.592 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.022 0.978 43 H 0.009 0.991 44 H 0.247 0.753 45 H 0.027 0.973 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.304 12.082 8.305 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.074 3.926 4 C -0.229 4.229 5 C -0.104 4.104 6 C -0.134 4.134 7 C -0.163 4.163 8 C -0.106 4.106 9 C -0.112 4.112 10 C -0.127 4.127 11 C 0.307 3.693 12 O -0.459 6.459 13 N -0.354 5.354 14 C 0.036 3.964 15 H 0.115 0.885 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.347 5.347 19 C -0.370 4.370 20 H 0.091 0.909 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.804 3.196 24 H -0.196 1.196 25 H -0.216 1.216 26 H -0.220 1.220 27 C -0.003 4.003 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.243 0.757 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.040 0.960 43 H 0.027 0.973 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -19.397 12.229 7.706 24.191 hybrid contribution 1.316 -0.336 0.148 1.366 sum -18.081 11.893 7.854 23.023 Atomic orbital electron populations 1.23287 0.76761 1.05275 1.02036 1.86030 1.23197 1.26960 1.88619 1.18968 0.91811 0.85055 0.96791 1.21454 1.00949 0.91955 1.08510 1.21136 0.93948 0.97766 0.97585 1.20110 0.94212 0.96049 1.02992 1.20741 1.00261 0.92311 1.02974 1.20967 1.00190 0.91043 0.98391 1.18807 0.90876 0.94897 1.06660 1.20470 1.02272 0.96622 0.93352 1.20943 0.76801 0.79696 0.91857 1.90642 1.50332 1.57248 1.47640 1.45820 1.53625 1.26896 1.09090 1.21973 0.96562 0.94438 0.83467 0.88509 1.23069 0.96746 0.93998 1.03428 1.20947 0.88737 0.86838 0.97440 1.44707 1.03450 1.11671 1.74868 1.19391 0.83539 0.98220 1.35841 0.90874 1.25539 1.01989 0.96153 1.01606 1.70155 1.33833 1.05676 1.49843 0.85060 0.80088 0.77450 0.77009 1.19599 1.21574 1.21973 1.22120 0.88722 0.93483 0.95956 0.92500 0.86787 0.91115 0.83365 0.83300 0.90185 0.91945 0.90468 0.85250 0.86480 0.86673 0.75704 0.89411 0.88915 0.95983 0.97321 0.94329 0.95470 0.95374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -8.28 9.63 -92.42 -0.89 -9.17 16 3 C 0.12 3.11 6.66 22.51 0.15 3.26 16 4 C -0.21 -4.47 9.04 22.37 0.20 -4.27 16 5 C -0.09 -1.71 9.69 22.26 0.22 -1.49 16 6 C -0.13 -2.91 5.88 -19.85 -0.12 -3.03 16 7 C -0.11 -1.69 10.01 71.23 0.71 -0.98 16 8 C -0.09 -2.25 9.33 22.26 0.21 -2.04 16 9 C -0.11 -3.07 4.39 -19.77 -0.09 -3.16 16 10 C -0.09 -2.33 5.55 29.10 0.16 -2.16 16 11 C 0.52 17.48 7.82 87.66 0.69 18.16 16 12 O -0.58 -23.57 15.68 -3.05 -0.05 -23.62 16 13 N -0.70 -23.50 5.19 -435.17 -2.26 -25.76 16 14 C 0.14 5.14 3.46 46.55 0.16 5.30 16 15 H 0.10 3.43 7.54 -2.39 -0.02 3.41 16 16 C -0.13 -4.69 6.53 31.78 0.21 -4.48 16 17 C 0.19 8.81 5.36 86.73 0.47 9.27 16 18 N -0.62 -31.91 3.40 -691.01 -2.35 -34.26 16 19 C -0.24 -13.64 10.28 84.04 0.86 -12.78 16 20 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 22 N -0.95 -55.70 10.31 21.65 0.22 -55.48 16 23 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 C 0.12 5.43 6.95 87.02 0.60 6.03 16 28 H 0.06 0.82 7.66 -2.39 -0.02 0.81 16 29 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 31 H 0.15 2.30 6.30 -2.91 -0.02 2.28 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 36 H 0.13 3.08 8.06 -2.91 -0.02 3.06 16 37 H 0.12 2.72 7.69 -2.39 -0.02 2.70 16 38 H 0.12 2.67 8.05 -2.38 -0.02 2.65 16 39 H 0.41 12.76 8.67 -92.71 -0.80 11.96 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 42 H 0.02 1.14 7.38 -2.39 -0.02 1.12 16 43 H 0.01 0.46 7.51 -2.38 -0.02 0.45 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -73.47 377.08 2.89 -70.57 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.18 Total: 23.71 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.01 Total: 6.16 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -4.38 Total: -115.49 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.94 Total: -32.79 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -73.47 2.89 -70.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015151888.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.118 kcal (2) G-P(sol) polarization free energy of solvation -73.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds